BAC Information

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BAC

Clone NameB6Ng01-162N04
Chromosome12 (Build37)
Map Location 48,425,359 - 48,426,437
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664952, Nova1, LOC100039190
Downstream geneEG664891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162N04.bB6Ng01-162N04.g
ACCDH955563DH955564
length1,0681,159
definitionDH955563|Mus musculus domesticus DNA, BAC clone: B6Ng01-162N04, 5' end.DH955564|Mus musculus domesticus DNA, BAC clone: B6Ng01-162N04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcttccaggacgcagaagcactggcaaagacttgaaactcttgt
ggagtgttagactaaattattctcaaaaatctttgacacagcacattaag
aggaaagggacatttgctcatctacctattaagccacaggccttggaata
atgtccctctattctatagtacagacagaaggtttgatatgattgaattt
taaatgaaagacatccttcaaaaagacagactacataatggaaagcagtt
agagttgaaaataggctataaagatgaggtgttggcttctgcaaatagca
tctggaaccattgatgcttaggatgtgtccaaagctctgcctagagcttg
aaaaacaaatgtgaccaagagaaatctttggtaaaatttctatttaagac
agaatgaaaaggtctatttattattctaataatatttataatcatagaga
aaaatcattataaattctcacacacatttgtaggtatttagtaaaattca
ggctttgttccaggtgcctaaaatttcaataaagattgaggcagggcatt
gcacaatatgaactagaaagtaagaatgattaaagaggaaaggtgcaata
atggtctgggaaaagctgatggtcagagtagaagaatgggtatgagaaga
gaacatattattaaatcaattcataataacatatccctgtaattttagat
tattgcatctttcaatcctcattgtaaaaccttctagcagtatatggtga
ttaggataaactggtaacagtttgaagagtgagtcaatggaatgtttacc
tttaaatggggcatttgtattatatccccttttcttttttttttttccat
tttttattaggtatttcgctcatttacatttgcaatgctataccaaaagt
cccccatagccacccaccccctctcccctacccacccactccccttttat
ggccctggcgttcccctgtactggggcatataaagtttgcgtgtccaatg
ggctctctttcagtgatgcgctagcatcttttgatgcatatgcagctaga
gtcagagctccggtactg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgtggatgtggagaaagaggaacactcctccgttgttggtg
ggattgcaggcttgcacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcattacctctcctgggc
atatatccataagatgccccaactggtaagaaggacacatgctccactat
gtttatagcagccttatttataatagccagaagctggaaagaacccagat
gcacctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactacacagctattaaaaagaatgaacttatgaaattcgtagccaa
atggatggacctggagggcatcatcctgaatgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattaggcccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacaaccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactcgcaaattttattgaaag
gacccagatatagctgtctcttgtgagactatgccggggcctagcaaaca
aagaagtggatgctcacagtcagctactggatggatcacagggctcccaa
tggagagctagagaaagtacccaagagctaaagggatctgcaccatatag
tggaacaacattatgaactacagtacccggagctcttgactctagctgct
tatgtatcaaagatgctagtcggccatcactgcaagaaaagtcatgactt
gcaactttaatgcccatactggaatgcaggccaaagggaaagtggtgggg
taggagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_48425359_48426437
seq2: B6Ng01-162N04.b_47_1114

seq1  GAATTCTCTTCCAGGACGCAGAAGCACTGGCAAAGACTTGAAACTCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCAGGACGCAGAAGCACTGGCAAAGACTTGAAACTCTTGT  50

seq1  GGAGTGTTAGACTAAATTATTCTCAAAAATCTTTGACACAGCACATTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTTAGACTAAATTATTCTCAAAAATCTTTGACACAGCACATTAAG  100

seq1  AGGAAAGGGACATTTGCTCATCTACCTATTAAGCCACAGGCCTTGGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGGACATTTGCTCATCTACCTATTAAGCCACAGGCCTTGGAATA  150

seq1  ATGTCCCTCTATTCTATAGTACAGACAGAAGGTTTGATATGATTGAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCTCTATTCTATAGTACAGACAGAAGGTTTGATATGATTGAATTT  200

seq1  TAAATGAAAGACATCCTTCAAAAAGACAGACTACATAATGGAAAGCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAAGACATCCTTCAAAAAGACAGACTACATAATGGAAAGCAGTT  250

seq1  AGAGTTGAAAATAGGCTATAAAGATGAGGTGTTGGCTTCTGCAAATAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGAAAATAGGCTATAAAGATGAGGTGTTGGCTTCTGCAAATAGCA  300

seq1  TCTGGAACCATTGATGCTTAGGATGTGTCCAAAGCTCTGCCTAGAGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAACCATTGATGCTTAGGATGTGTCCAAAGCTCTGCCTAGAGCTTG  350

seq1  AAAAACAAATGTGACCAAGAGAAATCTTTGGTAAAATTTCTATTTAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAATGTGACCAAGAGAAATCTTTGGTAAAATTTCTATTTAAGAC  400

seq1  AGAATGAAAAGGTCTATTTATTATTCTAATAATATTTATAATCATAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAAAAGGTCTATTTATTATTCTAATAATATTTATAATCATAGAGA  450

seq1  AAAATCATTATAAATTCTCACACACATTTGTAGGTATTTAGTAAAATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATTATAAATTCTCACACACATTTGTAGGTATTTAGTAAAATTCA  500

seq1  GGCTTTGTTCCAGGTGCCTAAAATTTCAATAAAGATTGAGGCAGGGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGTTCCAGGTGCCTAAAATTTCAATAAAGATTGAGGCAGGGCATT  550

seq1  GCACAATATGAACTAGAAAGTAAGAATGATTAAAGAGGAAAGGTGCAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATATGAACTAGAAAGTAAGAATGATTAAAGAGGAAAGGTGCAATA  600

seq1  ATGGTCTGGGAAAAGCTGATGGTCAGAGTAGAAGAATGGGTATGAGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTGGGAAAAGCTGATGGTCAGAGTAGAAGAATGGGTATGAGAAGA  650

seq1  GAACATATTATTAAATCAATTCATAATAACATATCCCTGTAATTTTAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATATTATTAAATCAATTCATAATAACATATCCCTGTAATTTTAGAT  700

seq1  TATTGCATCTTTCAATCCTCATTGTAAAACCTTCTAGCAGTATATGGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCATCTTTCAATCCTCATTGTAAAACCTTCTAGCAGTATATGGTGA  750

seq1  TTAGGATAAACTGGTAACAGTTTGAAGAGTGAGTCAATGGAATGTTTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATAAACTGGTAACAGTTTGAAGAGTGAGTCAATGGAATGTTTACC  800

seq1  TTTAAATGGGGCATTTGTATTATATCCCCTTTTCTTTTTTTTTTTTTCCA  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTAAATGGGGCATTTGTATTATATCCCCTTTTC-TTTTTTTTTTTTCCA  849

seq1  TTTTTTATTAGGTATTTCGCTCATTTACATTTGCAATGCTATACCAAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTAGGTATTTCGCTCATTTACATTTGCAATGCTATACCAAAAG  899

seq1  TCCCCCATAGCCACCCACCCCCTCTCCCCTACCCACCCACTCCCCTTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCATAGCCACCCACCCCCTCTCCCCTACCCACCCACTCCCCTTTTA  949

seq1  TGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAAT  999

seq1  GGGCCTCTCTTTCCAGTGATGGCCGCCTAGGCCATCTTTTGATGCATATG  1050
      ||| |||||||| ||||||||  || ||||  ||||||||||||||||||
seq2  GGG-CTCTCTTT-CAGTGATG--CG-CTAG--CATCTTTTGATGCATATG  1042

seq1  CAGCTAGAGTCAAGAGCTCCGGGGTACTG  1079
      ||||||||||| ||||||||  |||||||
seq2  CAGCTAGAGTC-AGAGCTCC--GGTACTG  1068