BAC Information

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BAC

Clone NameB6Ng01-162O09
Chromosome12 (Build37)2 (Build37)
Map Location 111,818,363 - 111,819,49262,844,210 - 62,844,243
singlet/doubletsingletsinglet
Overlap genePpp2r5c
Upstream geneRtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509, LOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799
Downstream gene9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162O09.bB6Ng01-162O09.g
ACCDH955620DH955621
length1,12251
definitionDH955620|Mus musculus domesticus DNA, BAC clone: B6Ng01-162O09, 5' end.DH955621|Mus musculus domesticus DNA, BAC clone: B6Ng01-162O09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(111,818,363 - 111,819,492)(62,844,210 - 62,844,243)
sequence
gaattctgcaaacactagcattgtagaagcccacagctagccctgcccac
gagctgtaccctggtcattacacagtgcttagggttgagtgaatgactaa
gaatggcctcctccttgtggccgctgaggctgtagcacatctgtgaccct
tgtttcccctgtgttttcctctaactgctaacccagaagtgcactccctc
ctcggttagcctagtgcatagccaactgcgttgcatttgtgattccaggc
acagaaggagctgaagaaggatcgtcccctcgtgcgccgcaagtccgagc
tgcctcaggacccccacaccgagaaagccttggaagctcactgcagagcc
agtgagctgctctcccaggacgggcgctagcgtctggagcagcacgccga
gctgggcctgtcggttctcttctggatgctgtagaaaagacatactgtgt
gtgccataccagtcagttacactcaatgtcaaagcttcctctgaccccgt
tctgtaggcaataatgcacgtccgcctcagctcgagattaggagttcaaa
caatggtggcttctctggccctgctggccaagcagggggctgggggagtc
ggtgacagtgtcatcaccatgttgtcaccaccccagcacagccctgagtg
agatccaaagtcagagctgtaggaaagcaccctgactgtcaccttctcgt
acccagtagaccctgtggtcctctgaaatagggattctgtggtaggtaac
accgatgctgtggcaaatcaaacgcacatggtaaaaggtgtctcctccct
ttacaaccctgacgctgtccccacgcttgctgtgccagccgcccgtggtg
gttggttaggtctctcagagatggctcctcgctttcccgttctagctgcc
tgccgggaaagaggccaacttttgcgctggggccgtcacagtgtttcttt
cctttggttaaggcacggtaccatgtcctgcttaccttaatgtctaccga
aagccatatttcataatctgtgtagaaggccagggtccacctcagcgcca
gggagggtctgaaaagtgcttcctcgcccaccttgaggagaaccgccacg
ttgaatgactgttcctgttagt
actgaatggaggctggatgacccagggtaggggaatgctagggcactgag
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_111818363_111819492
seq2: B6Ng01-162O09.b_45_1166

seq1  GAATTCTGCAAACACTAGCATTGTAGAAGCCCACAGCTAGCCCTGCCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAAACACTAGCATTGTAGAAGCCCACAGCTAGCCCTGCCCAC  50

seq1  GAGCTGTACCCTGGTCATTACACAGTGCTTAGGGTTGAGTGAATGACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTACCCTGGTCATTACACAGTGCTTAGGGTTGAGTGAATGACTAA  100

seq1  GAATGGCCTCCTCCTTGTGGCCGCTGAGGCTGTAGCACATCTGTGACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCCTCCTCCTTGTGGCCGCTGAGGCTGTAGCACATCTGTGACCCT  150

seq1  TGTTTCCCCTGTGTTTTCCTCTAACTGCTAACCCAGAAGTGCACTCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCCCTGTGTTTTCCTCTAACTGCTAACCCAGAAGTGCACTCCCTC  200

seq1  CTCGGTTAGCCTAGTGCATAGCCAACTGCGTTGCATTTGTGATTCCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTTAGCCTAGTGCATAGCCAACTGCGTTGCATTTGTGATTCCAGGC  250

seq1  ACAGAAGGAGCTGAAGAAGGATCGTCCCCTCGTGCGCCGCAAGTCCGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGAGCTGAAGAAGGATCGTCCCCTCGTGCGCCGCAAGTCCGAGC  300

seq1  TGCCTCAGGACCCCCACACCGAGAAAGCCTTGGAAGCTCACTGCAGAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAGGACCCCCACACCGAGAAAGCCTTGGAAGCTCACTGCAGAGCC  350

seq1  AGTGAGCTGCTCTCCCAGGACGGGCGCTAGCGTCTGGAGCAGCACGCCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCTGCTCTCCCAGGACGGGCGCTAGCGTCTGGAGCAGCACGCCGA  400

seq1  GCTGGGCCTGTCGGTTCTCTTCTGGATGCTGTAGAAAAGACATACTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCCTGTCGGTTCTCTTCTGGATGCTGTAGAAAAGACATACTGTGT  450

seq1  GTGCCATACCAGTCAGTTACACTCAATGTCAAAGCTTCCTCTGACCCCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATACCAGTCAGTTACACTCAATGTCAAAGCTTCCTCTGACCCCGT  500

seq1  TCTGTAGGCAATAATGCACGTCCGCCTCAGCTCGAGATTAGGAGTTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGGCAATAATGCACGTCCGCCTCAGCTCGAGATTAGGAGTTCAAA  550

seq1  CAATGGTGGCTTCTCTGGCCCTGCTGGCCAAGCAGGGGGCTGGGGGAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTGGCTTCTCTGGCCCTGCTGGCCAAGCAGGGGGCTGGGGGAGTC  600

seq1  GGTGACAGTGTCATCACCATGTTGTCACCACCCCAGCACAGCCCTGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAGTGTCATCACCATGTTGTCACCACCCCAGCACAGCCCTGAGTG  650

seq1  AGATCCAAAGTCAGAGCTGTAGGAAAGCACCCTGACTGTCACCTTCTCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAAAGTCAGAGCTGTAGGAAAGCACCCTGACTGTCACCTTCTCGT  700

seq1  ACCCAGTAGACCCTGTGGTCCTCTGAAATAGGGATTCTGTGGTAGGTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTAGACCCTGTGGTCCTCTGAAATAGGGATTCTGTGGTAGGTAAC  750

seq1  ACCGATGCTGTGGCAAATCAAACGCACATGGTAAAAGGTGTCTCCTCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGATGCTGTGGCAAATCAAACGCACATGGTAAAAGGTGTCTCCTCCCT  800

seq1  TTACAACCCTGACGCTGTCCCCACGCTTGCTGTGCCAGCCGCCCGTGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACCCTGACGCTGTCCCCACGCTTGCTGTGCCAGCCGCCCGTGGTG  850

seq1  GTTGGTTAGGTCTCTCAGAGATGGCTCCTCGCTTTCCCGTTCTAGCTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTAGGTCTCTCAGAGATGGCTCCTCGCTTTCCCGTTCTAGCTGCC  900

seq1  TGCCGGGAAAGAGGCCAACTTTTGCGCTGGGGCCGTCCACAGTGTTTCTT  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGCCGGGAAAGAGGCCAACTTTTGCGCTGGGGCCGT-CACAGTGTTTCTT  949

seq1  TCCTTTGGTTAATGGCACGGTCACCATGTCCTGCTTACCTTAATGTCTAC  1000
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  TCCTTTGGTTAA-GGCACGGT-ACCATGTCCTGCTTACCTTAATGTCTAC  997

seq1  CGAAAGCCATATTTCATAGTCTGTGGTAG-AGGCCAGGGTTCCACCTCAG  1049
      |||||||||||||||||| ||||| |||| ||||||||| ||||||||||
seq2  CGAAAGCCATATTTCATAATCTGT-GTAGAAGGCCAGGG-TCCACCTCAG  1045

seq1  CGCAAGGGAGGGTTCTGAGAAGTGCTTCCTCAGCCCACCTTGAGGAGAAC  1099
      ||| |||||||| ||||| |||||||||||| ||||||||||||||||||
seq2  CGCCAGGGAGGG-TCTGAAAAGTGCTTCCTC-GCCCACCTTGAGGAGAAC  1093

seq1  CGCCACGTTGGAATGACGTGTTCATGTTAGT  1130
      ||||||||| ||||||| ||||| |||||||
seq2  CGCCACGTT-GAATGAC-TGTTCCTGTTAGT  1122

seq1: chr2_62844210_62844243
seq2: B6Ng01-162O09.g_93_126 (reverse)

seq1  CCTCAGTGCCCTAGCATTCCCATACACTGGGTCA  34
      ||||||||||||||||||||| ||| ||||||||
seq2  CCTCAGTGCCCTAGCATTCCCCTACCCTGGGTCA  34