BAC Information

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BAC

Clone NameB6Ng01-163C09
Chromosome12 (Build37)
Map Location 63,397,787 - 63,540,879
singlet/doubletdoublet
Overlap geneLOC622746
Upstream geneLOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707, LOC100040403, LOC665713
Downstream geneLOC100040438, 1700047L15Rik, Tspyl-ps, EG665741, EG382606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163C09.bB6Ng01-163C09.g
ACCDH955807DH955808
length1,1511,139
definitionDH955807|Mus musculus domesticus DNA, BAC clone: B6Ng01-163C09, 5' end.DH955808|Mus musculus domesticus DNA, BAC clone: B6Ng01-163C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,397,787 - 63,398,942)(63,539,733 - 63,540,879)
sequence
gaattctcttcaaaattcccgtaattgctacctttactcaagcgtgttca
ctgaggtaacattttctctcagtcattttcatgtgctgttttgtacaatg
acaacatagcagcgacgaagccacagggagtcataagacataggaagagc
aagggaggataaaaatctcacaggaaatactcttaggtaaatgttagtag
gaaaggaagtatgcaagaagtcatctaattattgtggtagtattcacaat
agctgaaacatggactgacatgaaacatttatccagagataaatcttgtc
ttttgaaggaatgaacttgtatacatcatatcaaaaaagcaaagcagatg
tagaaatacaagtagaaatagtttctcacttatgtgggaagaacaatcat
taaaatgctaaagaattgaccataaagcaaaagaaatacacttacagaaa
tgcagtaagtcacagctaggcaaaaaacgaggcaggaaagacagtggtat
ggaagatcaacttgaccctagaatgctgtggtcctaaatagaaagctaat
ggtatatttcatatttttaaaaaaacgaggataacagttgggatcattag
aatatagcttacttaaagacaactgcatcacccaaaagcttagcccagca
tgaaaaagtctcaacaaagtatctatctctcctttggatacagtgcttgg
agtcactctgggatgtccagcatttgacacacaggcgtccactttcatac
aacacagattctaataaaataaggccctcctgaatgtctggtatgataat
tgtttgccttactatcaagaagcatgggaaaacaccaaagtctgcacatg
catgcccacatggactttgagaggtagtgctatgcaacttaaagtcttta
tgagtagtctaaaagaaaagcaactcctattatcagagctgtgttggctg
tgtgtgtgctaaatgcacctatgatgggagaaagctcgtttttcttggca
aggaggagaaaatcactgaattagcctccttatttcaataagaaatcttt
tccttggagaccactgcaagtcaggaaagtcacaacatgaaaggataggt
cttttgcctatagacctccgactagatactcaagtgagtataaaagaaaa
t
gaattcaatttgattgtgatttgaaaaaaacatttaagcgtttttgcatt
ctcacttgttttctattgcaagagacaaattaacaaaagattctagaata
attttctataaagtggccattaagctttctttctttattgcctgtatatc
caaacttactaataagcaattggagtttctgaattgtataaatgagtaaa
actgcttagtgaattgtgacagaaggaagtggatagtgaagaagcctaaa
aaggtgtttgtcttcagagctaaaatgaagggaagagcacagacaatcac
tagcttaattcaagcatttaaactgtgtttgcttcaattgccagataatc
aaaattaaagtacttggaatttcacctgaagtttccaagcagtttattta
atcattaagtgttttcagctgtgcaaaggtaaggttcacatcatagcgtg
tttgtctttatactggaagcaagagattttgctaaacttaccactaaaat
gactaaatgctgtggcagttctcaattaagtaaaaaaaaaaaaaagaaaa
agaaaaagaaagaaagaagaaagaaaagaaggaaggaaggaaggaaggaa
ggaaggaaggaaggaaggaagaaagaaaaagaaagaaaaaaaagagaaaa
gggttttccatgtgttttaagtggcacaatatttgtaagacatattctgc
actgccacacatattttggagtgttcacactatagtggaaagtagcaagt
ttagtaataggtgcctttctaaacagtccagcactctgcctggtcacaca
agccatagcaacaagcattgagtagaaattagaaatgcccagaatatttc
tgagcaatatcagttagaaacagctaatgtatgtttatcagcaattatag
agaaaaaataattttagatacagaaaaagcagactaagagaatgacagct
tatataaacatacagagcaaagtaccatgctaaaggttttagtttcttgg
ttcttatttgaatttttcttccaaagcagaacatgtttaggatatggttt
tgtgaataattatccctattcatcattattggtttccagccaacactaag
ctaataaatgagggtaagtttattatttaatgaatttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_63397787_63398942
seq2: B6Ng01-163C09.b_44_1194

seq1  GAATTCTCTTCAAAATTCCCGTAATTGCTACCTTTACTCAAGCGTGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCAAAATTCCCGTAATTGCTACCTTTACTCAAGCGTGTTCA  50

seq1  CTGAGGTAACATTTTCTCTCAGTCATTTTCATGTGCTGTTTTGTACAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTAACATTTTCTCTCAGTCATTTTCATGTGCTGTTTTGTACAATG  100

seq1  ACAACATAGCAGCGACGAAGCCACAGGGAGTCATAAGACATAGGAAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATAGCAGCGACGAAGCCACAGGGAGTCATAAGACATAGGAAGAGC  150

seq1  AAGGGAGGATAAAAATCTCACAGGAAATACTCTTAGGTAAATGTTAGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGGATAAAAATCTCACAGGAAATACTCTTAGGTAAATGTTAGTAG  200

seq1  GAAAGGAAGTATGCAAGAAGTCATCTAATTATTGTGGTAGTATTCACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAGTATGCAAGAAGTCATCTAATTATTGTGGTAGTATTCACAAT  250

seq1  AGCTGAAACATGGACTGACATGAAACATTTATCCAGAGATAAATCTTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAACATGGACTGACATGAAACATTTATCCAGAGATAAATCTTGTC  300

seq1  TTTTGAAGGAATGAACTTGTATACATCATATCAAAAAAGCAAAGCAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGGAATGAACTTGTATACATCATATCAAAAAAGCAAAGCAGATG  350

seq1  TAGAAATACAAGTAGAAATAGTTTCTCACTTATGTGGGAAGAACAATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATACAAGTAGAAATAGTTTCTCACTTATGTGGGAAGAACAATCAT  400

seq1  TAAAATGCTAAAGAATTGACCATAAAGCAAAAGAAATACACTTACAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCTAAAGAATTGACCATAAAGCAAAAGAAATACACTTACAGAAA  450

seq1  TGCAGTAAGTCACAGCTAGGCAAAAAACGAGGCAGGAAAGACAGTGGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTAAGTCACAGCTAGGCAAAAAACGAGGCAGGAAAGACAGTGGTAT  500

seq1  GGAAGATCAACTTGACCCTAGAATGCTGTGGTCCTAAATAGAAAGCTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATCAACTTGACCCTAGAATGCTGTGGTCCTAAATAGAAAGCTAAT  550

seq1  GGTATATTTCATATTTTTAAAAAAACGAGGATAACAGTTGGGATCATTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATTTCATATTTTTAAAAAAACGAGGATAACAGTTGGGATCATTAG  600

seq1  AATATAGCTTACTTAAAGACAACTGCATCACCCAAAAGCTTAGCCCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGCTTACTTAAAGACAACTGCATCACCCAAAAGCTTAGCCCAGCA  650

seq1  TGAAAAAGTCTCAACAAAGTATCTATCTCTCCTTTGGATACAGTGCTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAGTCTCAACAAAGTATCTATCTCTCCTTTGGATACAGTGCTTGG  700

seq1  AGTCACTCTGGGATGTCCAGCATTTGACACACAGGCGTCCACTTTCATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTCTGGGATGTCCAGCATTTGACACACAGGCGTCCACTTTCATAC  750

seq1  AACACAGATTCTAATAAAATAAGGCCCTCCTGAATGTCTGGTATGATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGATTCTAATAAAATAAGGCCCTCCTGAATGTCTGGTATGATAAT  800

seq1  TGTTTGCCTTACTATCAAGAAGCATGGGAAAACACCAAAGTCTGCACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCCTTACTATCAAGAAGCATGGGAAAACACCAAAGTCTGCACATG  850

seq1  CATGCCCACATGGACTTTGAGAGGTAGTGCTATGCAACTTAAAGTCTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCACATGGACTTTGAGAGGTAGTGCTATGCAACTTAAAGTCTTTA  900

seq1  TGAGGTAGTCTAAAAGAAAAGCAACTCCTATTATCAGGAGCTGTGTTGGC  950
      ||| |||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGA-GTAGTCTAAAAGAAAAGCAACTCCTATTATCA-GAGCTGTGTTGGC  948

seq1  TGTGTGTGTGCTAAATGCACCTATGATGGGAGAAAGCTCGTTTTTCTTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGCTAAATGCACCTATGATGGGAGAAAGCTCGTTTTTCTTGG  998

seq1  CAAGGAGGAGAAAAATCACTGAATTAGCCTCCTTATTTCAAATAAGAAAT  1050
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  CAAGGAGGAG-AAAATCACTGAATTAGCCTCCTTATTTC-AATAAGAAAT  1046

seq1  CTGTCCCT--GAGA-CACTGCAAGTCAGGAAAGTCACAAACACAGAAAGG  1097
      || | |||  |||| |||||||||||||||||||||| ||||  ||||||
seq2  CTTTTCCTTGGAGACCACTGCAAGTCAGGAAAGTCAC-AACA-TGAAAGG  1094

seq1  ATAAGGTCTTTGGC--ATAGACCTCCAGACTAGGATACCTCAAGTGAGTA  1145
      || |||||||| ||  |||||||||| ||||| |||| ||||||||||||
seq2  AT-AGGTCTTTTGCCTATAGACCTCC-GACTA-GATA-CTCAAGTGAGTA  1140

seq1  TAACAGAAAAT  1156
      ||| |||||||
seq2  TAAAAGAAAAT  1151

seq1: chr12_63539733_63540879
seq2: B6Ng01-163C09.g_69_1207 (reverse)

seq1  GGAATTTCATTAAATAATTAAAACTTTACCCCTTCATTTATTAGCTATGT  50
      |||| |||||||||||||  |||| ||||||  |||||||||||||  ||
seq2  GGAAATTCATTAAATAAT--AAAC-TTACCC--TCATTTATTAGCTTAGT  45

seq1  -TTGGCTGGAAACCAATAATGATGGAATA-GGATAA-TAATCACAAAACC  97
       |||||||||||||||||||||| ||||| |||||| || ||||||||||
seq2  GTTGGCTGGAAACCAATAATGAT-GAATAGGGATAATTATTCACAAAACC  94

seq1  ATAATCCTAAACATG-TCTGCTTTGGAAGAAAAATTCAAATAAGAACCAA  146
      || |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AT-ATCCTAAACATGTTCTGCTTTGGAAGAAAAATTCAAATAAGAACCAA  143

seq1  GAAACTAAAACCTTTAGCATGGTACTTTGCTCTGTATGTTTATTATAAGC  196
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAAACTAAAACCTTTAGCATGGTACTTTGCTCTGTATGTTTA-TATAAGC  192

seq1  TGTCATTCTCTTAGTCTGCTTTTTTCTTGTATCTTAAAATTATTTTTTTC  246
      ||||||||||||||||||||||||   |||||| |||||||| |||||||
seq2  TGTCATTCTCTTAGTCTGCTTTTT--CTGTATC-TAAAATTA-TTTTTTC  238

seq1  TCTATAATTGCTGATAAACATACATTAGCTGTTTCTAACTGATATTGCTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAATTGCTGATAAACATACATTAGCTGTTTCTAACTGATATTGCTC  288

seq1  AGAAATATTCTGGGCATTTCTAATTTCTACTCAATGCTTGTTGCTATGGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATTCTGGGCATTTCTAATTTCTACTCAATGCTTGTTGCTATGGC  338

seq1  TTGTGTGACCAGGCAGAGTGCTGGACTGTTTAGAAAGGCACCTATTACTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGACCAGGCAGAGTGCTGGACTGTTTAGAAAGGCACCTATTACTA  388

seq1  AACTTGCTACTTTCCACTATAGTGTGAACACTCCAAAATATGTGTGGCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCTACTTTCCACTATAGTGTGAACACTCCAAAATATGTGTGGCAG  438

seq1  TGCAGAATATGTCTTACAAATATTGTGCCACTTAAAACACATGGAAAACC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAATATGTCTTACAAATATTGTGCCACTTAAAACACATGGAAAACC  488

seq1  CTTTTCTCTTTTTTTTCTTTCTTTTTCTTTCTTCCTTCCTTCCTTCCTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCTTTTTTTTCTTTCTTTTTCTTTCTTCCTTCCTTCCTTCCTTC  538

seq1  CTTCCTTCCTTCCTTCCTTCCTTCTTTTCTTTCTTCTTTCTTTCTTTTTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCTTCCTTCCTTCCTTCTTTTCTTTCTTCTTTCTTTCTTTTTC  588

seq1  TTTTTCTTTTTTTTTTTTTTACTTAATTGAGAACTGCCACAGCATTTAGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTTTTTTTTTTTACTTAATTGAGAACTGCCACAGCATTTAGT  638

seq1  CATTTTAGTGGTAAGTTTAGCAAAATCTCTTGCTTCCAGTATAAAGACAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAGTGGTAAGTTTAGCAAAATCTCTTGCTTCCAGTATAAAGACAA  688

seq1  ACACGCTATGATGTGAACCTTACCTTTGCACAGCTGAAAACACTTAATGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCTATGATGTGAACCTTACCTTTGCACAGCTGAAAACACTTAATGA  738

seq1  TTAAATAAACTGCTTGGAAACTTCAGGTGAAATTCCAAGTACTTTAATTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAACTGCTTGGAAACTTCAGGTGAAATTCCAAGTACTTTAATTT  788

seq1  TGATTATCTGGCAATTGAAGCAAACACAGTTTAAATGCTTGAATTAAGCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATCTGGCAATTGAAGCAAACACAGTTTAAATGCTTGAATTAAGCT  838

seq1  AGTGATTGTCTGTGCTCTTCCCTTCATTTTAGCTCTGAAGACAAACACCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTGTCTGTGCTCTTCCCTTCATTTTAGCTCTGAAGACAAACACCT  888

seq1  TTTTAGGCTTCTTCACTATCCACTTCCTTCTGTCACAATTCACTAAGCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGCTTCTTCACTATCCACTTCCTTCTGTCACAATTCACTAAGCAG  938

seq1  TTTTACTCATTTATACAATTCAGAAACTCCAATTGCTTATTAGTAAGTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTCATTTATACAATTCAGAAACTCCAATTGCTTATTAGTAAGTTT  988

seq1  GGATATACAGGCAATAAAGAAAGAAAGCTTAATGGCCACTTTATAGAAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATACAGGCAATAAAGAAAGAAAGCTTAATGGCCACTTTATAGAAAA  1038

seq1  TTATTCTAGAATCTTTTGTTAATTTGTCTCTTGCAATAGAAAACAAGTGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTAGAATCTTTTGTTAATTTGTCTCTTGCAATAGAAAACAAGTGA  1088

seq1  GAATGCAAAAACGCTTAAATGTTTTTTTCAAATCACAATCAAATTGAATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAAAAACGCTTAAATGTTTTTTTCAAATCACAATCAAATTGAATT  1138

seq1  C  1147
      |
seq2  C  1139