BAC Information

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BAC

Clone NameB6Ng01-163F15
Chromosome12 (Build37)
Map Location 90,568,985 - 90,700,767
singlet/doubletdoublet
Overlap geneNrxn3
Upstream geneLOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915
Downstream geneLOC100039498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163F15.bB6Ng01-163F15.g
ACCDH955963DH955964
length943547
definitionDH955963|Mus musculus domesticus DNA, BAC clone: B6Ng01-163F15, 5' end.DH955964|Mus musculus domesticus DNA, BAC clone: B6Ng01-163F15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,699,835 - 90,700,767)(90,568,985 - 90,569,511)
sequence
gaattcttagttccactaagttaagtatttttgaggaactgacaggatga
acttgccctatatgttctgtctgtcctttgaatcttgtctgtggtttctg
tctcttacagatttttcatccgtgaatgaagttattttgccatatgctca
taacttcttaagagaacaattacctcatgcgatgccattcactgcatgtg
agttgtggaaaacatccagcacatttccaaacgcaccttacgttaaaatg
tagaaatataggaatatatcatcaagcaacgtaagggggaaattgaattt
tccttgagtaactgctatggattttctttgccaatgataagaatggatgt
ctgtattttttattggccaccaagaagctttaaaagtggaaatttaaggt
ttactgaacgcaacaaaaatccaaatatctgtattgctcccatacaatcg
tctaccacaaatagatgggctttgccattacttatttatgtctagatcac
aattttattcaaacattcatcacattattattgcagtaagttactgtact
aggttgcccctgtcctctgggaagcgagatgaattgtgaatatacatata
atgaaaactttcaaattgtggaaaagctgtttcttttttaaattcagact
tctgctccttataatacttagtacttgtagaaatagcatcctgacagatt
gcttgacagaagcagttaccagcttcttcactacagccttaccatgtgta
taaccttatcacgtatacaacagtatcatgtgtgcagcctcatgatatat
acaacccgatcatgactacaaacgtctacatatacagcattagaacccat
accaccctatcatgcaaaagctttgtgaccaagcctctcaacaacatggt
caaaatactatatacttaattatattgagagaaagcagatgtt
gaattcccaccatctgttgtccagctctcaagcttagctaattaccacca
aattatgcatgcatgcatgctgctggaaccttagggttatcatgctaagt
tggtcattgatgtggctcaaaagcatattgttgggcacggttgttggttg
ctttctgttgcatttaggtaccatgagagatagtccttggggagtacatt
taggtcagttccacatcaagagcctcttctgggtcctgtttctgaaatgc
atgatatctttagcaatgtgacttctcttccactctggagctaaccaagg
tcagcagcaatccctgtgtgatttgagagtttcttgatcctcccttatca
atgactcaaaagaatgctcatcaaagaaacttctcttgcacagatggaga
tcactacagaaaactacaaacaatgcagagttgtggagctcaatcccaac
atatcaaaacaaaacaaaagaaaacaaaaaaacaaaagaaaacattctca
cacttaaagctcaaggagcattgcttaagaagtacccaaggagctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_90699835_90700767
seq2: B6Ng01-163F15.b_43_968 (reverse)

seq1  AATATTAATTAAGTATAAAATAATTTTGGCCATGTTGTTGAGAGGCTTGG  50
      |||| |||||||||||| | | |||||| |||||||||||||||||||||
seq2  AATA-TAATTAAGTATATAGT-ATTTTGACCATGTTGTTGAGAGGCTTGG  48

seq1  AACACAAAGCTGTATGCATTATAGGGTGGTATGTGTTATAATGCTGTATA  100
        ||||||||| | ||||| ||||||||||||| ||| ||||||||||||
seq2  -TCACAAAGCT-TTTGCATGATAGGGTGGTATGGGTTCTAATGCTGTATA  96

seq1  CATAATACGTCTGTATACATGATAGGGTTGTATATATAATAAGGCTGCAC  150
        | | |||| ||||  |||||| ||||||||||||| || |||||||||
seq2  TGT-AGACGTTTGTAGTCATGATCGGGTTGTATATATCATGAGGCTGCAC  145

seq1  ACATGATAATGTTGTATACGTGATAAGGTTATACACATGGTAAGGCTGTA  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATACTGTTGTATACGTGATAAGGTTATACACATGGTAAGGCTGTA  195

seq1  GTGAAGAAGCTGGTAAATGCTTCTTAAAAACAATATGTTTTGATGGTATT  250
      |||||||||||||||| |||||||   || |||| |||   |||| ||||
seq2  GTGAAGAAGCTGGTAACTGCTTCTGTCAAGCAATCTGTCAGGATGCTATT  245

seq1  TCTATGAAGTACTAAGTAATATTTCTAACAGAAGTCTGAATTTAAAAAAG  300
      ||||  |||||||||||| |||    | ||||||||||||||||||||||
seq2  TCTA-CAAGTACTAAGTATTATAAGGAGCAGAAGTCTGAATTTAAAAAAG  294

seq1  AAACAGCTTTACCACAATTTGAAAGTTTTCTTTTTATGTATATTCACAAT  350
      |||||||||| ||||||||||||||||||| || ||||||||||||||||
seq2  AAACAGCTTTTCCACAATTTGAAAGTTTTCATTATATGTATATTCACAAT  344

seq1  TCATCTCGCTTCCCAGAGGACTGGGGCAACTTAGTACAGTAACTTACTGA  400
      ||||||||||||||||||||| |||||||| |||||||||||||||||| 
seq2  TCATCTCGCTTCCCAGAGGACAGGGGCAACCTAGTACAGTAACTTACTGC  394

seq1  AATAATAATGTGATGAATGTATGAATAAAATTCTGATCTAGACATAAATA  450
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  AATAATAATGTGATGAATGTTTGAATAAAATTGTGATCTAGACATAAATA  444

seq1  AGTAATGGCAAAGCACAACAATCTGTGGTAGACGATTGTCTGGGAGCAAT  500
      |||||||||||||| || | || |||||||||||||||| ||||||||||
seq2  AGTAATGGCAAAGCCCATCTATTTGTGGTAGACGATTGTATGGGAGCAAT  494

seq1  ACAGATATTTAGATCTTTGTTGCCTTCAGTAAACCTTAAATTTCGACTTT  550
      |||||||||| ||| |||||||| |||||||||||||||||||| |||||
seq2  ACAGATATTTGGATTTTTGTTGCGTTCAGTAAACCTTAAATTTCCACTTT  544

seq1  TAAAGCTTCTTGGTGGCCAATAAAAAATACAGACATCCATTCTTATCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAAAGCTTCTTGGTGGCCAATAAAAAATACAGACATCCATTCTTATCATT  594

seq1  TGCAAAGAAAATCTATAGCAGTTACTCAAGGAAAATTCAATTTCCCTATT  650
       |||||||||||| ||||||||||||||||||||||||||||||||  ||
seq2  GGCAAAGAAAATCCATAGCAGTTACTCAAGGAAAATTCAATTTCCCCCTT  644

seq1  ACGTTGCTTGATGATATATTCCTATATTTCTACATTTTAACGTAAGGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGCTTGATGATATATTCCTATATTTCTACATTTTAACGTAAGGTGC  694

seq1  GTTTGGAAATGTGATGGATGTTTTCCACAACTCACCTGCAGTGAATGGCC  750
      ||||||||||||| ||||||||||||||||||||| ||||||||||||| 
seq2  GTTTGGAAATGTGCTGGATGTTTTCCACAACTCACATGCAGTGAATGGCA  744

seq1  TCACCTGAGGTAATTGTTCTCTTCTGTACTTTTGAGACTATGGCACTAAA  800
      || | ||||||||||||||||||  | | || ||||  |||||||  | |
seq2  TCGCATGAGGTAATTGTTCTCTTAAGAAGTTATGAGCATATGGCAAAATA  794

seq1  ACTTCATTCACGGATGAAAAATCTGTAAGAGACAGAAACCACAGACAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTCACGGATGAAAAATCTGTAAGAGACAGAAACCACAGACAAGA  844

seq1  TACAAAGGACAGACAGAACATATAGGGCAAGTTCATCCTCTTTGTTCCTC  900
      | ||||||||||||||||||||||||||||||||||||| |  |||||||
seq2  TTCAAAGGACAGACAGAACATATAGGGCAAGTTCATCCTGTCAGTTCCTC  894

seq1  ATAAATACTTAACTTAGTTGGAACTTTGAATTC  933
      | ||||||||||||||| |||||||  ||||||
seq2  AAAAATACTTAACTTAG-TGGAACTAAGAATTC  926

seq1: chr12_90568985_90569511
seq2: B6Ng01-163F15.g_67_592

seq1  GAATTCCCACCATCTGTTGTCCAGCTCTCAAGCTTAGCTAATTACCACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACCATCTGTTGTCCAGCTCTCAAGCTTAGCTAATTACCACCA  50

seq1  AATTATGCATGCATGCATGCTGCTGGAACCTTAGGGTTATCATGCTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGCATGCATGCATGCTGCTGGAACCTTAGGGTTATCATGCTAAGT  100

seq1  TGGTCATTGATGTGGCTCAAAAGCATATTGTTGGGCAGGGTTGTTGGTTG  150
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGTCATTGATGTGGCTCAAAAGCATATTGTTGGGCACGGTTGTTGGTTG  150

seq1  CTTTCTGTTGCATTTTGGTACCATGAAAGATAGTCCTTGGGGAGTACATT  200
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  CTTTCTGTTGCATTTAGGTACCATGAGAGATAGTCCTTGGGGAGTACATT  200

seq1  TAGGTCAGTTCCAGATCAGGAGCCTCTTCTGGGTCCTGTTTCTGAAATGC  250
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  TAGGTCAGTTCCACATCAAGAGCCTCTTCTGGGTCCTGTTTCTGAAATGC  250

seq1  ATGATATCTTTAGCAATGTGACTTCTCTTCCACTCTGGAGCTAACCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATCTTTAGCAATGTGACTTCTCTTCCACTCTGGAGCTAACCAAGG  300

seq1  TCAGCAGCAATCCCTGTGTGATTTGAGAGTTTCTTGGTCATCCCTTATCA  350
      |||||||||||||||||||||||||||||||||||| || ||||||||||
seq2  TCAGCAGCAATCCCTGTGTGATTTGAGAGTTTCTTGATCCTCCCTTATCA  350

seq1  ATGACTCAAAAGAAGGCTCATCAAAGAAACTTCTCTTGCAACAGATGGAG  400
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  ATGACTCAAAAGAATGCTCATCAAAGAAACTTCTCTTGC-ACAGATGGAG  399

seq1  ATCACTACAGAAAACTACAAACAATGCAGAGTTGTGGAGCTCAATCCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTACAGAAAACTACAAACAATGCAGAGTTGTGGAGCTCAATCCCAA  449

seq1  CATATCAAAACAAAACAAAAGAAAACAAAAAAACAAAAGAAAACATTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAAAACAAAACAAAAGAAAACAAAAAAACAAAAGAAAACATTCTC  499

seq1  ACACTTAAGGCTCAAGGAGCATTGCTT  527
      |||||||| ||||||||||||||||||
seq2  ACACTTAAAGCTCAAGGAGCATTGCTT  526