BAC Information

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BAC

Clone NameB6Ng01-163J11
Chromosome12 (Build37)
Map Location 50,525,992 - 50,526,964
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424
Downstream geneLOC665071, LOC665077, LOC100039455, Prkcm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163J11.bB6Ng01-163J11.g
ACCDH956138DH956139
length9731,182
definitionDH956138|Mus musculus domesticus DNA, BAC clone: B6Ng01-163J11, 5' end.DH956139|Mus musculus domesticus DNA, BAC clone: B6Ng01-163J11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttgaattgagaaagaattttaaacaagaaaataaaagagcacc
tgatgtgctaacttaggagggtatgggaaaaggcaaaagggtctctctca
gatctaaaaagtttaaagtatcatagaaagtcagacatgtgaaaaaataa
agcagtcaagaaagataagtgatagaatcagatacagcatatatccacaa
agggaaatatgacaaaaatgtgtgtgaaggcagatttcccaaggaacaaa
gtcatagaaagccaaatgctgtgctattcaacttgtaggaagctttaagt
cccaagcaacagttctcagaatgcataaagaattaaacagttaggtggat
taaaatggaaggtttttttttcgatgagtgaacaattattctccaagatt
atggtatgtacattttcttattacaaggaaatacaattggagctgatgtg
accaacagaaaggcaagggccacagtactggccacaaggctgtcagaaca
tcagagacaggtactccagactagaccaggccagggtcctccttggacct
gaacaaaccccagtgacatgaaccaactaggcaatatctttgcgaatgca
gagatgtgcagcaacagcagaacttcaggatgaaaaagccaggtgactcc
taagaaatgactgtctatcgtggaaagctgtacctcacattactctcaca
ttactttggtgaagtgctgcttcaccaaagagtgcttttgtgaaacaatt
gatactgttgtagatccaatttatgctgtattggacatcactaataagtc
acttattatctctttagccatctaagaccagtttttacttgatcatagga
gacagtgatggccctttagttatcttgcccatctacaaaaagaaaagtat
atatatatttatatatatatatatatatatatatatatacatacatatat
gtgtgtgtgtgtgtgaacgtata
gaattctcacctgaggaataccgaatggcagagaagcacctaaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggttaagatcaaaaactcaggtgacagc
agatgctggcaaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatacagaagatgtcccaactggtaagaagaacacatgctccactat
gttcatagcagccttgtttatgatagccagaaggtggaaagaacacagat
gccccttaacagaggaatgaatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaaaatgaatttgtgaaattcctaggcaaa
tggatggacctggagggtatcatcctgagtgaagtaaccgaatcacaaag
gaactcgcacaatatgtactcactgataagtggatattagcccagaaact
taggatacccaagatataagatacaacttgccaaacacatgaaattcaag
aagaacgaagaccaaagtgtggatgctttacctttcttagaaatgggaac
aaaacacccatggaaggagttacagagacaaaatttggagctgtgataaa
aggatggaccatctagtgatgccatatgcagggatccatcccataatcag
cttccaaatgctggcaccattgcatacactagcaagattttgctgaaagg
acccagatatagctctctcttgtgagactatgccgtgggcctagcaaaca
cagaagtggatgatcagagtcagctattgatgggtcacacggaccccatg
gaggagctagagaaattacccaaaggagctaaagggaactgcaacaccta
taggtggaacaacaatatgaactaaccaggtaccttggaactcttgtctt
aagctgcatatgtatcaaagttggcctagtcgcaatcaatgcaagtgaga
gcccattggaatcaatctttaatggcccagttagggaaccgccaggccaa
aaagtgggatgggggtggtgatagggattctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_50525992_50526964
seq2: B6Ng01-163J11.b_42_1014 (reverse)

seq1  TATACGTACACACACACACACATATATATGTATGTATATATATATATATA  50
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  TATACGTTCACACACACACACACATATATGTATGTATATATATATATATA  50

seq1  TATATATATATATATATATATATATACTTTTCTTTTTGTAGATGGGCAAG  100
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TATATATATATATAAATATATATATACTTTTCTTTTTGTAGATGGGCAAG  100

seq1  ATAACTAAAGGGCCATCACTGTCTCCTATGATCAAGTGAAAACTGGTCTT  150
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATAACTAAAGGGCCATCACTGTCTCCTATGATCAAGTAAAAACTGGTCTT  150

seq1  AGATGGCTAAAGAGATAATAAGTGACTTATTAGTGATGTCCAATACAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTAAAGAGATAATAAGTGACTTATTAGTGATGTCCAATACAGCA  200

seq1  TAAATTGGATCTACAACAGTATCAATTGTTTCACAAAAGCACTCTTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGGATCTACAACAGTATCAATTGTTTCACAAAAGCACTCTTTGGT  250

seq1  GAAGCAGCACTTCACCAAAGTAATGTGAGAGTAATGTGAGGTACAGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGCACTTCACCAAAGTAATGTGAGAGTAATGTGAGGTACAGCTTT  300

seq1  CCACGATAGACAGTCATTTCTTAGGAGTCACCTGGCTTTTTCATCCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGATAGACAGTCATTTCTTAGGAGTCACCTGGCTTTTTCATCCTGAA  350

seq1  GTTCTGCTGTTGCTGCACATCTCTGCATTCGCAAAGATATTGCCTAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCTGTTGCTGCACATCTCTGCATTCGCAAAGATATTGCCTAGTTG  400

seq1  GTTCATGTCACTGGGGTTTGTTCAGGTCCAAGGAGGACCCTGGCCTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGTCACTGGGGTTTGTTCAGGTCCAAGGAGGACCCTGGCCTGGTC  450

seq1  TAGTCTGGAGTACCTGTCTCTGATGTTCTGACAGCCTTGTGGCCAGTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGGAGTACCTGTCTCTGATGTTCTGACAGCCTTGTGGCCAGTACT  500

seq1  GTGGCCCTTGCCTTTCTGTTGGTCACATCAGCTCCAATTGTATTTCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCTTGCCTTTCTGTTGGTCACATCAGCTCCAATTGTATTTCCTTG  550

seq1  TAATAAGAAAATGTACATACCATAATCTTGGAGAATAATTGTTCACTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGAAAATGTACATACCATAATCTTGGAGAATAATTGTTCACTCAT  600

seq1  CGAAAAAAAAACCTTCCATTTTAATCCACCTAACTGTTTAATTCTTTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAAAAAACCTTCCATTTTAATCCACCTAACTGTTTAATTCTTTATG  650

seq1  CATTCTGAGAACTGTTGCTTGGGACTTAAAGCTTCCTACAAGTTGAATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGAGAACTGTTGCTTGGGACTTAAAGCTTCCTACAAGTTGAATAG  700

seq1  CACAGCATTTGGCTTTCTATGACTTTGTTCCTTGGGAAATCTGCCTTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATTTGGCTTTCTATGACTTTGTTCCTTGGGAAATCTGCCTTCAC  750

seq1  ACACATTTTTGTCATATTTCCCTTTGTGGATATATGCTGTATCTGATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTTTGTCATATTTCCCTTTGTGGATATATGCTGTATCTGATTCT  800

seq1  ATCACTTATCTTTCTTGACTGCTTTATTTTTTCACATGTCTGACTTTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTATCTTTCTTGACTGCTTTATTTTTTCACATGTCTGACTTTCTA  850

seq1  TGATACTTTAAACTTTTTAGATCTGAGAGAGACCCTTTTGCCTTTTCCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTTTAAACTTTTTAGATCTGAGAGAGACCCTTTTGCCTTTTCCCA  900

seq1  TACCCTCCTAAGTTAGCACATCAGGTGCTCTTTTATTTTCTTGTTTAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCCTAAGTTAGCACATCAGGTGCTCTTTTATTTTCTTGTTTAAAA  950

seq1  TTCTTTCTCAATTCAAGGAATTC  973
      |||||||||||||||||||||||
seq2  TTCTTTCTCAATTCAAGGAATTC  973