BAC Information

Click to search

BAC

Clone NameB6Ng01-163M01
Chromosome12 (Build37)
Map Location 27,395,000 - 27,592,083
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668726, Rnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163M01.bB6Ng01-163M01.g
ACCDH956260DH956261
length1,1001,179
definitionDH956260|Mus musculus domesticus DNA, BAC clone: B6Ng01-163M01, 5' end.DH956261|Mus musculus domesticus DNA, BAC clone: B6Ng01-163M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,590,999 - 27,592,083)(27,395,000 - 27,396,183)
sequence
gaattcctcaaataaccaaagattccattttaaaactgaaaataaaagtg
tcctttggactctaggttgatattttcttaaatcaaaggcagcacggagc
acgtgaacatcaagcgcatggagggcagacatgtgacacagaaggtgtag
ttacacacgtgcatggttagaagccaccacagatcgacagtggccccact
gtcagccacatcctgaaaacatgaccctgaagagccaagtatgaaaatcc
caaaccctgaagcctgaaatcattagcatttaaccccctccccccccaaa
aaaaaccctcacaatcaccaaagaataaaactctaaatgtcagaatcctg
aaaactaaaataacagcatttatggatcccattatgagaaaaacaatgca
aaagaaaagcaggaaactcagaaaactgactgctagacacaggattggcc
acatagtgagttcaaggccaacctgttaaatgggttaatcgtttaatttt
tcagatctgcctaaagcatgactgtgttcttgcatgatgcttagacaaga
aagagataaagacacacacacacacacacacacacacacacacacacaca
cacacacacacatcaagacaaagagagcgggggtagggggcttaaaagaa
agccatttaagaatttcctttaacaaatagactgattgtattcttctcat
tttctttcttattattaaattctgatttctgcaatctatacatttttttt
tctggggtattttaattagatagtgggacttaagaataggtttccagtat
acagaggaagctgcagtggtttttaattttatagggggacagctggtagg
tttctgttttgagaagggtttttttttttttctttaattctgtcatctga
actttgcttgggtaatgctgcaattagcagctattcatttctttaatgaa
catgggttcatgtaaattcagctatgaataggcaattcaggaccttcttt
tgggcaataattgggtttatttaccaggcttccatttcaatttttgaacc
ctctgaagtccttaacaccatcctattaaaattttcatgggccattctaa

gaattcacaggttctggggttcaaaaaaaaagtttcaattttagtgtaca
catatgctgtggtgaggttgaaagagagtcataggatggacatcatgtaa
gagaatgttacttttaagtgcatggtgatttaaacactgattagcaatta
ttattattaagtaaacactgtgaaagttgtaaaatgcttgtttgacatag
atgtttttctctgtttataaacttcccaagagtatggtaatttctcattg
catgtaagagtgagactacctgtgtggggaattaggaaaggaaaaacatc
ccaacctttagacagcctggaacctcccttttatctcttgattttcctct
tacccactctcagctactacatgcctcctgctgtgacttggtatccattg
ctcttgttctttggtgtgaattggagaaactttctgtgactttgcttcac
tgagtacagtgagacacaagctcatgggttaaaccttctcctgggtcctc
tgtcagtctgaacttaggtcacccaatggtgggtctcccgagcaatgttt
acatcctgtagctgtttctttgacagggggatgtgggtgcagagatcagg
cttcaaggccttggaaacagctgaagatctggaggagtgtggctcccatc
catgctgtctgacttcagaacattgacaccagagcaacttaggtattttt
acccagaaggatctgatcttgttgccccggtcttttctattaggtacaaa
aatacctactaattacttagggttttgtcttttgatttaactaatggttg
aagagggagcagaagcattcagagctccaagcctttatgaacactgttat
aatcacatgacataatacttgtgtgccttgggctaagcatgtaacaactc
ttaagcattcagaaatggcccattcttctctaaaggaaatccttttccaa
tgctcatttgtggtggttatgaggattttatggcagccactagacataaa
agaacaaataaatctgtaaacggagagagattaccacgatgtagttttct
ttgctgtgggtggagtcatatctcctgatcctcttggcaaccctcctggg
tcaactgaatgtgcaagacaaacatgtttagagaaatgcaagggtgggct
gttcaaagcctttacatattagatcctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_27590999_27592083
seq2: B6Ng01-163M01.b_42_1141 (reverse)

seq1  TTAG-ATGG-CCATGAAA--TTATATAGGATGGTGTTTAAAGAC-TCAGA  45
      |||| |||| ||||||||  ||  ||||||||||| |||| ||| |||||
seq2  TTAGAATGGCCCATGAAAATTTTAATAGGATGGTG-TTAAGGACTTCAGA  49

seq1  GGGTTC-AAAATTGAAATGGAAGCCTGGTAAATAA--CCCATTA-TGCCC  91
      |||||| ||||||||||||||||||||||||||||  || |||| |||||
seq2  GGGTTCAAAAATTGAAATGGAAGCCTGGTAAATAAACCCAATTATTGCCC  99

seq1  -AAAGAA-GTCCTG-ATTGCCTATTCATAGCTGAAATTTACATGAACCCA  138
       |||||| |||||| |||||||||||||||||| ||||||||||||||||
seq2  AAAAGAAGGTCCTGAATTGCCTATTCATAGCTG-AATTTACATGAACCCA  148

seq1  TGTTCATTAAAG-AATGAATAGCTGCTAATTTGCAGCA-TAACCAAGCAA  186
      |||||||||||| |||||||||||||||| |||||||| || ||||||||
seq2  TGTTCATTAAAGAAATGAATAGCTGCTAA-TTGCAGCATTACCCAAGCAA  197

seq1  AGTTCAGATGACAGAATTAAAGGAAAAAAAAAAAACCCTTCTCAAATCAG  236
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  AGTTCAGATGACAGAATTAAAGAAAAAAAAAAAAACCCTTCTCAAAACAG  247

seq1  AAACCTACCAGCTGT-CCCCTAT-AAATTAAAAACCACTGCAGCTTCCTC  284
      ||||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  AAACCTACCAGCTGTCCCCCTATAAAATTAAAAACCACTGCAGCTTCCTC  297

seq1  TGTATACTGGAAACCTATTCTTAAGTCCCACTATCTAATTAAAATA-CCC  333
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTATACTGGAAACCTATTCTTAAGTCCCACTATCTAATTAAAATACCCC  347

seq1  AG-AAAAAAAATGTATAGATTGCAGAAATCAGAATTTAATAATAAGAAAG  382
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAAATGTATAGATTGCAGAAATCAGAATTTAATAATAAGAAAG  397

seq1  AAAATGAGAAGAATACAATCAGTCTATTTGTTAAAGGAAATTCTTAAATG  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGAAGAATACAATCAGTCTATTTGTTAAAGGAAATTCTTAAATG  447

seq1  GCTTTCTTTTAAGCCCCCTACCCCCGCTCTCTTTGTCTTGATGTGTGTGT  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTTTAAGCCCCCTACCCCCGCTCTCTTTGTCTTGATGTGTGTGT  497

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTATCT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTATCT  547

seq1  CTTTCTTGTCTAAGCATCATGCAAGAACACAGTCATGCTTTAGGCAGATC  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGTCTAAGCATCATGCAAGAACACAGTCATGCTTTAGGCAGATC  597

seq1  TGAAAAATTAAACGATTAACCCATTTAACAGGTTGGCCTTGAACTCACTA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATTAAACGATTAACCCATTTAACAGGTTGGCCTTGAACTCACTA  647

seq1  TGTGGCCAATCCTGTGTCTAGCAGTCAGTTTTCTGAGTTTCCTGCTTTTC  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCAATCCTGTGTCTAGCAGTCAGTTTTCTGAGTTTCCTGCTTTTC  697

seq1  TTTTGCATTGTTTTTCTCATAATGGGATCCATAAATGCTGTTATTTTAGT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCATTGTTTTTCTCATAATGGGATCCATAAATGCTGTTATTTTAGT  747

seq1  TTTCAGGATTCTGACATTTAGAGTTTTATTCTTTGGTGATTGTGAGGGTT  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGATTCTGACATTTAGAGTTTTATTCTTTGGTGATTGTGAGGGTT  797

seq1  TTTTTTGGGGGGGGAGGGGGTTAAATGCTAATGATTTCAGGCTTCAGGGT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGGGGGGGAGGGGGTTAAATGCTAATGATTTCAGGCTTCAGGGT  847

seq1  TTGGGATTTTCATACTTGGCTCTTCAGGGTCATGTTTTCAGGATGTGGCT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATTTTCATACTTGGCTCTTCAGGGTCATGTTTTCAGGATGTGGCT  897

seq1  GACAGTGGGGCCACTGTCGATCTGTGGTGGCTTCTAACCATGCACGTGTG  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGGGGCCACTGTCGATCTGTGGTGGCTTCTAACCATGCACGTGTG  947

seq1  TAACTACACCTTCTGTGTCACATGTCTGCCCTCCATGCGCTTGATGTTCA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACACCTTCTGTGTCACATGTCTGCCCTCCATGCGCTTGATGTTCA  997

seq1  CGTGCTCCGTGCTGCCTTTGATTTAAGAAAATATCAACCTAGAGTCCAAA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTCCGTGCTGCCTTTGATTTAAGAAAATATCAACCTAGAGTCCAAA  1047

seq1  GGACACTTTTATTTTCAGTTTTAAAATGGAATCTTTGGTTATTTGAGGAA  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTTTTATTTTCAGTTTTAAAATGGAATCTTTGGTTATTTGAGGAA  1097

seq1  TTC  1085
      |||
seq2  TTC  1100

seq1: chr12_27395000_27396183
seq2: B6Ng01-163M01.g_69_1247

seq1  GAATTCACAGGTTCTGGGGTTCAAAAAAAAAGTTTCAATTTTAGTGTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGTTCTGGGGTTCAAAAAAAAAGTTTCAATTTTAGTGTACA  50

seq1  CATATGCTGTGGTGAGGTTGAAAGAGAGTCATAGGATGGACATCATGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCTGTGGTGAGGTTGAAAGAGAGTCATAGGATGGACATCATGTAA  100

seq1  GAGAATGTTACTTTTAAGTGCATGGTGATTTAAACACTGATTAGCAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGTTACTTTTAAGTGCATGGTGATTTAAACACTGATTAGCAATTA  150

seq1  TTATTATTAAGTAAACACTGTGAAAGTTGTAAAATGCTTGTTTGACATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTAAGTAAACACTGTGAAAGTTGTAAAATGCTTGTTTGACATAG  200

seq1  ATGTTTTTCTCTGTTTATAAACTTCCCAAGAGTATGGTAATTTCTCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTCTCTGTTTATAAACTTCCCAAGAGTATGGTAATTTCTCATTG  250

seq1  CATGTAAGAGTGAGACTACCTGTGTGGGGAATTAGGAAAGGAAAAACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAGAGTGAGACTACCTGTGTGGGGAATTAGGAAAGGAAAAACATC  300

seq1  CCAACCTTTAGACAGCCTGGAACCTCCCTTTTATCTCTTGATTTTCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTTTAGACAGCCTGGAACCTCCCTTTTATCTCTTGATTTTCCTCT  350

seq1  TACCCACTCTCAGCTACTACATGCCTCCTGCTGTGACTTGGTATCCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACTCTCAGCTACTACATGCCTCCTGCTGTGACTTGGTATCCATTG  400

seq1  CTCTTGTTCTTTGGTGTGAATTGGAGAAACTTTCTGTGACTTTGCTTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTCTTTGGTGTGAATTGGAGAAACTTTCTGTGACTTTGCTTCAC  450

seq1  TGAGTACAGTGAGACACAAGCTCATGGGTTAAACCTTCTCCTGGGTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACAGTGAGACACAAGCTCATGGGTTAAACCTTCTCCTGGGTCCTC  500

seq1  TGTCAGTCTGAACTTAGGTCACCCAATGGTGGGTCTCCCGAGCAATGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTCTGAACTTAGGTCACCCAATGGTGGGTCTCCCGAGCAATGTTT  550

seq1  ACATCCTGTAGCTGTTTCTTTGACAGGGGGATGTGGGTGCAGAGATCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTGTAGCTGTTTCTTTGACAGGGGGATGTGGGTGCAGAGATCAGG  600

seq1  CTTCAAGGCCTTGGAAACAGCTGAAGATCTGGAGGAGTGTGGCTCCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGGCCTTGGAAACAGCTGAAGATCTGGAGGAGTGTGGCTCCCATC  650

seq1  CATGCTGTCTGACTTCAGAACATTGACACCAGAGCAACTTAGGTATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGTCTGACTTCAGAACATTGACACCAGAGCAACTTAGGTATTTTT  700

seq1  ACCCAGAAGGATCTGATCTTGTTGCCCCGGTCTTTTCTATTAGGTACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAAGGATCTGATCTTGTTGCCCCGGTCTTTTCTATTAGGTACAAA  750

seq1  AATACCTACTAATTACTTAGGGTTTTGTCTTTTGATTTAACTAATGGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTACTAATTACTTAGGGTTTTGTCTTTTGATTTAACTAATGGTTG  800

seq1  AAGAGGGAGCAGAAGCATTCAGAGCTCCAAGCCTTTATGAACACTGTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGAGCAGAAGCATTCAGAGCTCCAAGCCTTTATGAACACTGTTAT  850

seq1  AATCACATGACATAATACTTGTGTGCCTTGGGCTAAGCATGTAACAACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACATGACATAATACTTGTGTGCCTTGGGCTAAGCATGTAACAACTC  900

seq1  TTAAGCATTCAGAAATGGCCCATTCTTCTCTTAAAGGAAAATCCTTTTCC  950
      |||||||||||||||||||||||||||||| |||||| ||||||||||||
seq2  TTAAGCATTCAGAAATGGCCCATTCTTCTC-TAAAGG-AAATCCTTTTCC  948

seq1  AATGCTCATTTGT-GTGGTTAATGAGGATTTTATGCCAGCCACTAGACAT  999
      ||||||||||||| |||||| |||||||||||||| ||||||||||||||
seq2  AATGCTCATTTGTGGTGGTT-ATGAGGATTTTATGGCAGCCACTAGACAT  997

seq1  AAAAGAACAAATAAATCTGTAAACAGAGAGAGATTACCACAGATGTAGGT  1049
      |||||||||||||||||||||||| ||||||||||||||| |||||| ||
seq2  AAAAGAACAAATAAATCTGTAAACGGAGAGAGATTACCAC-GATGTA-GT  1045

seq1  TTTCTTTGCTGTGGGTGGAGTCATATCCTCTGATCCCTCTTGGCAACTCT  1099
      |||||||||||||||||||||||||||  ||||| |||||||||||| ||
seq2  TTTCTTTGCTGTGGGTGGAGTCATATCTCCTGAT-CCTCTTGGCAACCCT  1094

seq1  TCTGGGTCAAATCTGATTGTGCAAG-CAAACATG-TTAGAGAAATGGTAG  1147
       |||||||||  |||| |||||||| |||||||| |||||||||||  ||
seq2  CCTGGGTCAA--CTGAATGTGCAAGACAAACATGTTTAGAGAAATGCAAG  1142

seq1  GGTGGGCTGGTCAAAAGCTTTTAC--ATTAGATTCCTGC  1184
      ||||||||| || ||||| |||||  |||||| ||||||
seq2  GGTGGGCTGTTC-AAAGCCTTTACATATTAGA-TCCTGC  1179