BAC Information

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BAC

Clone NameB6Ng01-164C17
Chromosome12 (Build37)
Map Location 47,011,266 - 47,137,967
singlet/doubletdoublet
Overlap genenone
Upstream geneStxbp6
Downstream geneLOC664952, Nova1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164C17.bB6Ng01-164C17.g
ACCDH956567DH956568
length1,1321,055
definitionDH956567|Mus musculus domesticus DNA, BAC clone: B6Ng01-164C17, 5' end.DH956568|Mus musculus domesticus DNA, BAC clone: B6Ng01-164C17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,011,266 - 47,011,968)(47,136,914 - 47,137,967)
sequence
gaattcagaatctgaccgaataaaacatgaatggcctctagcctaattcc
tcatagagtcagtccctgttgccatcagaaacctcatgagtacagtcttc
cctgtccaggcttctatctgtatttttgttgttgttgttgttctttgttt
tgttttgatttgcttgattttctgcaagcttgcagcagaatatttcatta
aggtctgctcagcattctagggcttccttcacacgaagttccaagcagct
gcacattcttcatgtgagtcagttataaagggctatgagaatcatgggca
ggcagtggtaacaatgatcctgatcctaggtacctcttttcaatattagt
aacatctcttgttgttgtgttaaagggaggaaagcaaacagaaacaactg
tggggggagaaatgtttattgtatttcatgttttgcaggtatagtccatc
attgtaggtaagcatgcatgtgggagcatattgttgggaagcatgcttgt
gggagtagctcaagcctagagcagcatgagtatagagctccttagtcaca
tctgcattatgaagaatcagacaggacaggaagcagggctggattataca
cctcaagctccacctcaggaaatcagaatttccatattcttttttcaacc
actgccacaaaatttggactaaattttcacacacagaagcccatggagga
tttctatacccaagctatacacttggaatctcactatagttttgagtata
cttcacgtgatggtgaaagacattgaacatcatgttacatattttctttt
aaaagttgtccatttaattgacctgtcaagtttttgattgtatggatttt
atttaatttttagttctttacatgatgttgattttattctttgttagatg
tgtagttgtcaagatttatcccattttgtgaattatgtcttctatctgta
tattttctttgaatattttaagcccaaattattatccaaaattcataata
gcgaatgtttgttagtagagaaaaaataagattttgactgaaataagcct
aaaaacaacttactccattgaaagaaagctgtgaaaatttggaatattac
agcgagttcacccctcaaattgaagaccacat
gaattcactcagctagtatcaggtttgtcaacagtagtcttacataagtg
tggacgattaaagtcagaaggctctttgccctgttcaacactctattggt
gtaatttcttggcaagctgcatagctcactaagccacaatttccatatct
ataaactaacgataattgagactattttcctagggctatcatgaggatta
aaggaattaaagcatttgcaactctgcacaatggttgacatgtgataact
caataagcattgtacttacaatagctacaggagaagaaaagaagttgaag
ccagaggcatagtagtgctataaaccaactcacccctacttcccatcttc
tacagtaaggattcttggtgagtgaacaactgagctaacactagatcatt
gaaggactatcacagttgtcacaatcactttgggagagacctattttata
gcacagaaaaatatttttacagattaataataacaaatatatagataaat
cccataataaaaattagaacttgaattgctataaaaattcttcatataat
ttggatgttgaaagttctgtggataaacgaaactattaaccactgacttc
aaacctgaaggataatattatacatatgcagattacttcaatttataaag
tttattttctaatgatgtggaagttttataaaattaaaatataggggatg
ttaacattatctgttgctgaagtgcttttgtgcatttaaggactttttac
agtttatatgcttgaagactgtcatatttcctcacagtttacaaatgttc
ttgaatatttttgtgaaaaaatctttaaaggcttgaaatattctcatgag
acataatggttaaaattgccttgttttaggtactaaagaggcaataagct
aatgagggtggaagccatgctttttattattacatgctttaaatttttgc
catccctccttccttactccccctctcagaagttctttaacctattcctc
ctcttctccccacatccccctttcctgggggtatcaagtttctaccgaaa
gatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_47011266_47011968
seq2: B6Ng01-164C17.b_493_1179

seq1  CCATCATTGTAGGTAAGCATGCATGTGGGAGCATATTGTTGGGAAGCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATTGTAGGTAAGCATGCATGTGGGAGCATATTGTTGGGAAGCATG  50

seq1  CTTGTGGGAGTAGCTCAAGCCTAGAGCAGCATGAGTATAGAGCTCCTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGGAGTAGCTCAAGCCTAGAGCAGCATGAGTATAGAGCTCCTTAG  100

seq1  TCACATCTGCATTATGAAGAATCAGACAGGACAGGAAGCAGGGCTGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCTGCATTATGAAGAATCAGACAGGACAGGAAGCAGGGCTGGATT  150

seq1  ATACACCTCAAGCTCCACCTCAGGAAATCAGAATTTCCATATTCTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCTCAAGCTCCACCTCAGGAAATCAGAATTTCCATATTCTTTTTT  200

seq1  CAACCACTGCCACAAAATTTGGACTAAATTTTCACACACAGAAGCCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACTGCCACAAAATTTGGACTAAATTTTCACACACAGAAGCCCATG  250

seq1  GAGGATTTCTATACCCAAGCTATACACTTGGAATCTCACTATAGTTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTTCTATACCCAAGCTATACACTTGGAATCTCACTATAGTTTTGA  300

seq1  GTATACTTCACGTGATGGTGAAAGACATTGAACATCATGTTACATATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTTCACGTGATGGTGAAAGACATTGAACATCATGTTACATATTTT  350

seq1  CTTTTAAAAGTTGTCCATTTAATTGACCTGTCAAGTTTTTGATTGTATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAAGTTGTCCATTTAATTGACCTGTCAAGTTTTTGATTGTATGG  400

seq1  ATTTTATTTAATTTTTAGTTCTTTACATGATGTTGATTTTATTCTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTAATTTTTAGTTCTTTACATGATGTTGATTTTATTCTTTGTT  450

seq1  AGATGTGTAGTTGTCAAAGATTTTATCCCATTTTGTGAATTATGTCTTCT  500
      ||||||||||||||| |||| |||||||||||||||||||||||||||||
seq2  AGATGTGTAGTTGTC-AAGA-TTTATCCCATTTTGTGAATTATGTCTTCT  498

seq1  ATCTGTATATTTTCTTTGAATATTTTAAGCCCAAATTAATATCCAAAAAT  550
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  ATCTGTATATTTTCTTTGAATATTTTAAGCCCAAATTATTATCC-AAAAT  547

seq1  CCATAATAGCGTAATGTTTGTAAGTAGAGAAAATATAAGATTTTTGAACT  600
       |||||||||| ||||||||| ||||||||||| ||||||||||   |||
seq2  TCATAATAGCG-AATGTTTGTTAGTAGAGAAAAAATAAGATTTT--GACT  594

seq1  GAAATAAAGCTAAAAACAAACTAACTCAATTGAAAGAAAAGCTGTAGAAA  650
      |||||||  |||||||| |||| |||| |||||||| |||||||| ||||
seq2  GAAATAAGCCTAAAAAC-AACTTACTCCATTGAAAG-AAAGCTGT-GAAA  641

seq1  ATTTGGAAATAAATCACAGGCAGAGTTTCACCCCACCAATATGAAGACCA  700
      |||||||   | || ||||  ||   |||||||| | ||| |||||||||
seq2  ATTTGGA---ATATTACAGCGAG---TTCACCCCTCAAAT-TGAAGACCA  684

seq1  CAT  703
      |||
seq2  CAT  687

seq1: chr12_47136914_47137967
seq2: B6Ng01-164C17.g_68_1122 (reverse)

seq1  CTATC-TTCTGTAGAAACTTGATA-CCCCAGGGAAGGGGGATGTGGGGAG  48
      ||||| ||| |||||||||||||| ||||||| |||||||||||||||||
seq2  CTATCTTTCGGTAGAAACTTGATACCCCCAGGAAAGGGGGATGTGGGGAG  50

seq1  GAGAGGGAGAATAGGTTAAAGAAC-TCTGAGAGGGGGAGTAAGGAAGGAG  97
       |||||  |||||||||||||||| |||||||||||||||||||||||||
seq2  AAGAGGAGGAATAGGTTAAAGAACTTCTGAGAGGGGGAGTAAGGAAGGAG  100

seq1  GGATGGCAAAAATATAAAGCATGTAATAATAAAAAAGCATGGCTTCCACC  147
      ||||||||||||| |||||||||||||||| |||||||||||||||||||
seq2  GGATGGCAAAAATTTAAAGCATGTAATAAT-AAAAAGCATGGCTTCCACC  149

seq1  CTCATTAGCTTATTGCCTCTTTAGTACCTAAAACAAGGCAATTTTAACCA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAGCTTATTGCCTCTTTAGTACCTAAAACAAGGCAATTTTAACCA  199

seq1  TTATGTCTCATGAGAATATTTCAAGCCTTTAAAGATTTTTTTCACAAAAA  247
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTATGTCTCATGAGAATATTTCAAGCCTTTAAAGA-TTTTTTCACAAAAA  248

seq1  TATTCAAGAACATTTGTAAACTGTGAGGAAATATGACAGTCTTCAAGCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAGAACATTTGTAAACTGTGAGGAAATATGACAGTCTTCAAGCAT  298

seq1  ATAAACTGTAAAAAGTCCTTAAATGCACAAAAGCACTTCAGCAACAGATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTGTAAAAAGTCCTTAAATGCACAAAAGCACTTCAGCAACAGATA  348

seq1  ATGTTAACATCCCCTATATTTTAATTTTATAAAACTTCCACATCATTAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAACATCCCCTATATTTTAATTTTATAAAACTTCCACATCATTAGA  398

seq1  AAATAAACTTTATAAATTGAAGTAATCTGCATATGTATAATATTATCCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACTTTATAAATTGAAGTAATCTGCATATGTATAATATTATCCTT  448

seq1  CAGGTTTGAAGTCAGTGGTTAATAGTTTCGTTTATCCACAGAACTTTCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTGAAGTCAGTGGTTAATAGTTTCGTTTATCCACAGAACTTTCAA  498

seq1  CATCCAAATTATATGAAGAATTTTTATAGCAATTCAAGTTCTAATTTTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAATTATATGAAGAATTTTTATAGCAATTCAAGTTCTAATTTTTA  548

seq1  TTATGGGATTTATCTATATATTTGTTATTATTAATCTGTAAAAATATTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGATTTATCTATATATTTGTTATTATTAATCTGTAAAAATATTTT  598

seq1  TCTGTGCTATAAAATAGGTCTCTCCCAAAGTGATTGTGACAACTGTGATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTATAAAATAGGTCTCTCCCAAAGTGATTGTGACAACTGTGATA  648

seq1  GTCCTTCAATGATCTAGTGTTAGCTCAGTTGTTCACTCACCAAGAATCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCAATGATCTAGTGTTAGCTCAGTTGTTCACTCACCAAGAATCCT  698

seq1  TACTGTAGAAGATGGGAAGTAGGGGTGAGTTGGTTTATAGCACTACTATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAGAAGATGGGAAGTAGGGGTGAGTTGGTTTATAGCACTACTATG  748

seq1  CCTCTGGCTTCAACTTCTTTTCTTCTCCTGTAGCTATTGTAAGTACAATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGCTTCAACTTCTTTTCTTCTCCTGTAGCTATTGTAAGTACAATG  798

seq1  CTTATTGAGTTATCACATGTCAACCATTGTGCAGAGTTGCAAATGCTTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGAGTTATCACATGTCAACCATTGTGCAGAGTTGCAAATGCTTTA  848

seq1  ATTCCTTTAATCCTCATGATAGCCCTAGGAAAATAGTCTCAATTATCGTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTAATCCTCATGATAGCCCTAGGAAAATAGTCTCAATTATCGTT  898

seq1  AGTTTATAGATATGGAAATTGTGGCTTAGTGAGCTATGCAGCTTGCCAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATAGATATGGAAATTGTGGCTTAGTGAGCTATGCAGCTTGCCAAG  948

seq1  AAATTACACCAATAGAGTGTTGAACAGGGCAAAGAGCCTTCTGACTTTAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACACCAATAGAGTGTTGAACAGGGCAAAGAGCCTTCTGACTTTAA  998

seq1  TCGTCCACACTTATGTAAGACTACTGTTGACAAACCTGATACTAGCTGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCCACACTTATGTAAGACTACTGTTGACAAACCTGATACTAGCTGAG  1048

seq1  TGAATTC  1054
      |||||||
seq2  TGAATTC  1055