BAC Information

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BAC

Clone NameB6Ng01-164N12
Chromosome12 (Build37)
Map Location 7,110,909 - 7,254,233
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043137, LOC238049, LOC100042118
Downstream geneLOC668380, EG668388, Apob, 1110057K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164N12.bB6Ng01-164N12.g
ACCDH957063DH957064
length1,0791,203
definitionDH957063|Mus musculus domesticus DNA, BAC clone: B6Ng01-164N12, 5' end.DH957064|Mus musculus domesticus DNA, BAC clone: B6Ng01-164N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,110,909 - 7,111,996)(7,253,032 - 7,254,233)
sequence
gaattcaaaataatattatgtgcatgaaatgatgaaggtgttagaggaga
gctatacaacttgagaagaaagagtggtatcccttcattcagaatggaaa
tgagtggggaagaaggcagataggaagggagcagtgcttaggaaggcaac
aagaaagcaatgtttgaaatggataaggacaaaagaattgaggcctgaag
gatctgtcagttaatcccaaatggctgaaggacagagagcaaaagcatca
ggaagccttccaagaatcttgtaatggtgattcctaacctctgcttgact
gacttccatctttgaagggatggtggtataaagttaaattctagaaagaa
tttctattttataagcaggcattttaagatacaaaaatgcttttcaaaga
aagtgtaggaaacttatcacaatttatgatcctccacttcggtgtacaaa
caaccatacagacttctcaacgtgaagatcacagaccaccacagcattat
tctgcaggtgccctaggctcagcatgtcttactctgagcaccctatttta
cttttccactcagataaaacatcctgcatttctctaagtgtatcaagtta
atatagttctcaaaaaagagaaatcaggaactcacctttcattctatatc
actaattaggaaagaaacctttatttactcaagctgtaaaaattggcttg
aatctgagtcaatcctcatcatctatgttcccttgtaatcaagaccctta
gcatctctgagagtcataaaaactattttgcccagtcaattccttgtcaa
atgtttccttcaagttgatgataaaagagatctttctatcagccatcaag
cataaaagtttaatatgaatagcatcaacacaatgttaattacttatgca
caaaactatctatcaaactcacctctatgacaaacatgtagcacctgcct
ctttttggggagattcctggcctttggaagttttttgaaaatattggact
tatgcgatagtgtatgtaaatgagaaacatctaataaaaaataaatctaa
aaataagttgggctaatattggaaagaaa

gaattctctccacttctagctgtgacatcagtaatctcagctaaccttta
ctttcaggtgattggcttcctttcctatttcctttgacaaatgactttaa
atgttcattattgtccttgaggcccatatccaaacctcaagtccagaaat
tcgagtggtaaatctctttttcactttgggagaaagggaggaaaattgag
tggatttcatctgattaccttcaagtcctggcatttctactttatattta
aatttacctatttgtcccaagtagttattccttccctttccagtgcctgg
ggaatgagctggtttctttccttctcaagggcaaagcttacatagcactt
gtgcgccagacctcattattctttctgtggaattcctaggtttgctccta
acttaccctcagtctttactgaatgctcatcctgtccattttcattgata
acttccaaggacaaccaccctgttgttttctttttcaaatcttaatttca
agaatagctcattgggatataaagatgattcagtgattaagagcaagtac
tgatggcccttgcaagggacccagtttggtccccagtactcatgtgggac
aactctctgtaactacagttcccccagggatcgaatgcttctgatcccta
atgtcacctgtattcacatgcacataccctgcacacaaacacacaattaa
aactacaataaaattaaaaagaaaagaaaccttatttcttgtcaataccc
tatggccttaatgtaacccatgaccatgaatgtgggtttctcttactgtt
atatcttgttcttgtattttatgtcatttaaaaatgttaacttatatata
tttgtaagaaaaaatgatttttctaatacatgtattgcaaagtaattttg
taaattcttcccatttattcttctaggtcttcttgctaactatgtcttta
ttctttcgtactggaagactaaccattctacatattagaagttttcctat
atttctaattaatattaaaaaaattaactattatggtccatcctttcatc
tcaactcaacaatttggtcttctgaactaaccagtacctgtagcttttga
ctcctagctgctatgtaatcaaagaatggctattcggtccatacctggaa
agagaggtccaattggaaccctaactttaatggcctagtactggaacgcc
agg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_7110909_7111996
seq2: B6Ng01-164N12.b_47_1125

seq1  GAATTCAAAATAATATTATGTGCATGAAATGATGAAGGTGTTAGAGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATAATATTATGTGCATGAAATGATGAAGGTGTTAGAGGAGA  50

seq1  GCTATACAACTTGAGAAGAAAGAGTGGTATCCCTTCATTCAGAATGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACAACTTGAGAAGAAAGAGTGGTATCCCTTCATTCAGAATGGAAA  100

seq1  TGAGTGGGGAAGAAGGCAGATAGGAAGGGAGCAGTGCTTAGGAAGGCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGGGAAGAAGGCAGATAGGAAGGGAGCAGTGCTTAGGAAGGCAAC  150

seq1  AAGAAAGCAATGTTTGAAATGGATAAGGACAAAAGAATTGAGGCCTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCAATGTTTGAAATGGATAAGGACAAAAGAATTGAGGCCTGAAG  200

seq1  GATCTGTCAGTTAATCCCAAATGGCTGAAGGACAGAGAGCAAAAGCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTCAGTTAATCCCAAATGGCTGAAGGACAGAGAGCAAAAGCATCA  250

seq1  GGAAGCCTTCCAAGAATCTTGTAATGGTGATTCCTAACCTCTGCTTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCTTCCAAGAATCTTGTAATGGTGATTCCTAACCTCTGCTTGACT  300

seq1  GACTTCCATCTTTGAAGGGATGGTGGTATAAAGTTAAATTCTAGAAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCATCTTTGAAGGGATGGTGGTATAAAGTTAAATTCTAGAAAGAA  350

seq1  TTTCTATTTTATAAGCAGGCATTTTAAGATACAAAAATGCTTTTCAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTTTATAAGCAGGCATTTTAAGATACAAAAATGCTTTTCAAAGA  400

seq1  AAGTGTAGGAAACTTATCACAATTTATGATCCTCCACTTCGGTGTACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAGGAAACTTATCACAATTTATGATCCTCCACTTCGGTGTACAAA  450

seq1  CAACCATACAGACTTCTCAACGTGAAGATCACAGACCACCACAGCATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATACAGACTTCTCAACGTGAAGATCACAGACCACCACAGCATTAT  500

seq1  TCTGCAGGTGCCCTAGGCTCAGCATGTCTTACTCTGAGCACCCTATTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGGTGCCCTAGGCTCAGCATGTCTTACTCTGAGCACCCTATTTTA  550

seq1  CTTTTCCACTCAGATAAAACATCCTGCATTTCTCTAAGTGTATCAAGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCACTCAGATAAAACATCCTGCATTTCTCTAAGTGTATCAAGTTA  600

seq1  ATATAGTTCTCAAAAAAGAGAAATCAGGAACTCACCTTTCATTCTATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTCTCAAAAAAGAGAAATCAGGAACTCACCTTTCATTCTATATC  650

seq1  ACTAATTAGGAAAGAAACCTTTATTTACTCAAGCTGTAAAAATTGGCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTAGGAAAGAAACCTTTATTTACTCAAGCTGTAAAAATTGGCTTG  700

seq1  AATCTGAGTCAATCCTCATCATCTATGTTCCCTTGTAATCAAGACCCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAGTCAATCCTCATCATCTATGTTCCCTTGTAATCAAGACCCTTA  750

seq1  GCATCTCTGAGAGTCATAAAAACTA-TTTGCCCAGTCAATTCCTTGTCAA  799
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCATCTCTGAGAGTCATAAAAACTATTTTGCCCAGTCAATTCCTTGTCAA  800

seq1  ATGTTTCCTTCAAGTTGATGATAAAAGAGATCTTTCTATCAGCCATCAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCCTTCAAGTTGATGATAAAAGAGATCTTTCTATCAGCCATCAAG  850

seq1  CAT-AAAGTTTAATATGAATAGCATCAACACAATGTTAATTACTTATGCA  898
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGTTTAATATGAATAGCATCAACACAATGTTAATTACTTATGCA  900

seq1  CAAAACTATCTATCAAAACTCACCTCTATGACAAACAATGTAGCACCTGC  948
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  CAAAACTATCTATC-AAACTCACCTCTATGACAAAC-ATGTAGCACCTGC  948

seq1  CTCTATTTTGGGGAGATTCCTGGCCTTTGGAAGTTTTCTGAAAATATTGG  998
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTCT-TTTTGGGGAGATTCCTGGCCTTTGGAAGTTTTTTGAAAATATTGG  997

seq1  ACTTATGCGATAGTGTATGTAAATGAAGAAAACATCTAATAAAAAATAAA  1048
      ||||||||||||||||||||||||||   |||||||||||||||||||||
seq2  ACTTATGCGATAGTGTATGTAAATGA--GAAACATCTAATAAAAAATAAA  1045

seq1  TCTTAAAAAAATAAAGTCGTGCTAATATTGAAAAAAGAAA  1088
      |||   |||||| |||| | ||||||||||   |||||||
seq2  TCT---AAAAAT-AAGTTGGGCTAATATTG--GAAAGAAA  1079


seq1: chr12_7253032_7254233
seq2: B6Ng01-164N12.g_69_1271 (reverse)

seq1  CCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAA-TGGG  49
      |||||||||  || ||||| || ||| ||||||| | || ||||| ||| 
seq2  CCTGGCGTT--CCAGTACTAGGCCAT-TAAAGTTAGGGT-TCCAATTGGA  46

seq1  CCTCTCTTTCCAGTGATGG-CCGACTAGGCCATCTTTTGA-TACATATGC  97
      |||||||||||||  |||| |||| || |||||  ||||| |||||| ||
seq2  CCTCTCTTTCCAGGTATGGACCGAATA-GCCATTCTTTGATTACATA-GC  94

seq1  AGCTA-GAGTCAAGAGCTCCAGGGTACTGGTTAGTTCAG-AGA-CAAATG  144
      ||||| ||||||| |||| || ||||||||||||||||| ||| ||||| 
seq2  AGCTAGGAGTCAAAAGCTACA-GGTACTGGTTAGTTCAGAAGACCAAATT  143

seq1  TTGGAGTTGAGATGAAAGGATGGACCAT-ATAGTTAATTATTTTAATATT  193
       | ||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  GTTGAGTTGAGATGAAAGGATGGACCATAATAGTTAATTTTTTTAATATT  193

seq1  AATTAGAAATATAGGAAAAC-TCTAATATGTAGAATGGTTAGTCTTCCAG  242
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATTAGAAATATAGGAAAACTTCTAATATGTAGAATGGTTAGTCTTCCAG  243

seq1  TACGAAAGAATAAAGACATAGTTAGCAAGAAGACCTAGAAGAATAAATGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAAAGAATAAAGACATAGTTAGCAAGAAGACCTAGAAGAATAAATGG  293

seq1  GAAGAATTTACAAAATTACTTTGCAATACATGTATTAGAAAAATCATTTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATTTACAAAATTACTTTGCAATACATGTATTAGAAAAATCATTTT  343

seq1  TTCTTACAAATATATATAAGTTAACATTTTTAAATGACATAAAATACAAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACAAATATATATAAGTTAACATTTTTAAATGACATAAAATACAAG  393

seq1  AACAAGATATAACAGTAAGAGAAACCCACATTCATGGTCATGGGTTACAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATATAACAGTAAGAGAAACCCACATTCATGGTCATGGGTTACAT  443

seq1  TAAGGCCATAGGGTATTGACAAGAAATAAGGTTTCTTTTCTTTTTAATTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCATAGGGTATTGACAAGAAATAAGGTTTCTTTTCTTTTTAATTT  493

seq1  TATTGTAGTTTTAATTGTGTGTTTGTGTGCAGGGTATGTGCATGTGAATA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAGTTTTAATTGTGTGTTTGTGTGCAGGGTATGTGCATGTGAATA  543

seq1  CAGGTGACATTAGGGATCAGAAGCATTCGATCCCTGGGGGAACTGTAGTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGACATTAGGGATCAGAAGCATTCGATCCCTGGGGGAACTGTAGTT  593

seq1  ACAGAGAGTTGTCCCACATGAGTACTGGGGACCAAACTGGGTCCCTTGCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGTTGTCCCACATGAGTACTGGGGACCAAACTGGGTCCCTTGCA  643

seq1  AGGGCCATCAGTACTTGCTCTTAATCACTGAATCATCTTTATATCCCAAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCATCAGTACTTGCTCTTAATCACTGAATCATCTTTATATCCCAAT  693

seq1  GAGCTATTCTTGAAATTAAGATTTGAAAAAGAAAACAACAGGGTGGTTGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATTCTTGAAATTAAGATTTGAAAAAGAAAACAACAGGGTGGTTGT  743

seq1  CCTTGGAAGTTATCAATGAAAATGGACAGGATGAGCATTCAGTAAAGACT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAAGTTATCAATGAAAATGGACAGGATGAGCATTCAGTAAAGACT  793

seq1  GAGGGTAAGTTAGGAGCAAACCTAGGAATTCCACAGAAAGAATAATGAGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTAAGTTAGGAGCAAACCTAGGAATTCCACAGAAAGAATAATGAGG  843

seq1  TCTGGCGCACAAGTGCTATGTAAGCTTTGCCCTTGAGAAGGAAAGAAACC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCGCACAAGTGCTATGTAAGCTTTGCCCTTGAGAAGGAAAGAAACC  893

seq1  AGCTCATTCCCCAGGCACTGGAAAGGGAAGGAATAACTACTTGGGACAAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATTCCCCAGGCACTGGAAAGGGAAGGAATAACTACTTGGGACAAA  943

seq1  TAGGTAAATTTAAATATAAAGTAGAAATGCCAGGACTTGAAGGTAATCAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAATTTAAATATAAAGTAGAAATGCCAGGACTTGAAGGTAATCAG  993

seq1  ATGAAATCCACTCAATTTTCCTCCCTTTCTCCCAAAGTGAAAAAGAGATT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCCACTCAATTTTCCTCCCTTTCTCCCAAAGTGAAAAAGAGATT  1043

seq1  TACCACTCGAATTTCTGGACTTGAGGTTTGGATATGGGCCTCAAGGACAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTCGAATTTCTGGACTTGAGGTTTGGATATGGGCCTCAAGGACAA  1093

seq1  TAATGAACATTTAAAGTCATTTGTCAAAGGAAATAGGAAAGGAAGCCAAT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAACATTTAAAGTCATTTGTCAAAGGAAATAGGAAAGGAAGCCAAT  1143

seq1  CACCTGAAAGTAAAGGTTAGCTGAGATTACTGATGTCACAGCTAGAAGTG  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGAAAGTAAAGGTTAGCTGAGATTACTGATGTCACAGCTAGAAGTG  1193

seq1  GAGAGAATTC  1202
      ||||||||||
seq2  GAGAGAATTC  1203


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