BAC Information

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BAC

Clone NameB6Ng01-165M06
Chromosome12 (Build37)
Map Location 23,788,045 - 23,891,784
singlet/doubletdoublet
Overlap geneEG628081
Upstream geneEG668662, LOC668664, 2410018L13Rik, LOC77114, EG668669, EG668670, LOC668680, LOC100042895, LOC100043435
Downstream geneLOC100042903, LOC100043440, EG668518, LOC100043445, LOC668697, LOC100042923, LOC677338, EG668701, LOC668471, LOC668703, LOC546534, 9030624G23Rik, EG668710
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165M06.bB6Ng01-165M06.g
ACCDH957737DH957738
length1,0691,031
definitionDH957737|Mus musculus domesticus DNA, BAC clone: B6Ng01-165M06, 5' end.DH957738|Mus musculus domesticus DNA, BAC clone: B6Ng01-165M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,890,713 - 23,891,784)(23,788,045 - 23,789,403)
sequence
gaattcctgatgccctgacctgaacatactctttttctgatgtgtaatca
ttctgctgaagtttaaatgaaccaatcatgtaaatccgctccaattcctc
ccccagtcccagaccattttctttaaaaacccctagctttcgagtctcgt
ggccaacaactgctgtctcctgtgtaagatacctgttggcccagagcacc
cacattaaactacctcatgtatttgcatccaacggtctctcgtgattcct
tgggtgctggccgaatcgggagttcagtgagggtttccccactacgttct
ttcagtggcaagaccaaggttgttctaaagacacacttgtgccttccctt
cagtttttctgaggactgtgacaatagaccccaaggaactggaattttca
ccaggaatttcaagctgacattgggaaagtactgggaccctgacactaga
cagagcaggagtctgtctctagtgctggcagcctgcatgacagatatggg
gaagggttgtgtgctgagaagagacaaggatgggtcaaccacgggctgaa
tcttgaccacgactgccaaacctaaacacctctgtagtcaggagcagaga
gagatggatcctggtgctcagttgctttctccattttattcagcccagga
accaacctacagaacggtgctaccaacacttagggtgagtctttcctttt
atttggtgctacctagaaattcccctgcagatgtgtccacaggtttatca
tctaggtaattctagattccatcaagttgacaatcattatccactgtcac
agagccattagtgagtaggtggtgatcctcgttagtgggagcactggatg
tagagtcaagggagcttggtcttgcaatggccttgctggtagtcacactt
gtgggaaacagccagactctgctgtccttcttgcttttgcttgggttcca
gcacatataaaataggtttggagtacatgcctgtgtgctagcacttgcaa
acagtttgttattgtttggttttcagaacagggttttctcttggtgcact
ggctatcctgggactcact
gaattcaaactcatgaccttcgacttggaagaatactccaacccctatta
agcatcctgtcccctaagcttgtacaattagggacactcccagttacctg
aagacagttttacagtgctaggccaggcttcaccctgagaaaatcataga
atgcagtgatgtgctgtgggaagtgggggatacccaagagaaccagaggt
acagatggtcctcagagagtactccaacccacagctgactgatcacagac
acaattaggccaataaatcatctgaattaggacattttcatctatatctc
attcagaaattctcagctgtattttaaaaatccagagattctgaagacac
tagtcaaaaatcataccctctaactccctaggcaagaggcatggttactg
ctgctgccaacaatacagcctagagaaactttacaaaaaccttttgtggg
tctgaaaagaagggaatgtgagggacattataagcccaacatgggaaata
aaagtggtctcttgctgccataggacagtagaccactccatctttttaag
gctcccatgtacaaatatgctgtatgaggtagcagctggggtcagacatt
atgtatggcttctggtattttaccagcactgcctgtgaataagttcagcc
ttcaaaaatagctgtgccagtgggtagcttttattccggcgcaaggcaat
aaactgcaatcctaaaactctgcaactctctgccactttccaccattgtg
aacatccttccatttagtgtctcagggacacaactatctcagcatgtata
acttgagggtattgtgttatagcacaggatctccttcacaaggcaatttt
ctgatccctctgcctctcttccatctataagtccttttgttcttctctga
attgaagatattccctgtgactttcaagttttatttttggatacatggtc
tctgtgatgccttgggagttaaaagaaagagtgtttttcttgactaatat
agtaccagtcaactaatcaatgttgtctaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_23890713_23891784
seq2: B6Ng01-165M06.b_43_1111 (reverse)

seq1  AGTGAGTTCCAGGATAGCCAGTGCTACACAGAG-AAACCCTGTCTTGAAA  49
      ||||||| |||||||||||||||| ||  |||| |||||||||  |||||
seq2  AGTGAGTCCCAGGATAGCCAGTGC-ACCAAGAGAAAACCCTGTTCTGAAA  49

seq1  ACCAAACAATAACAAACTGTTTGCAAGTGCTAGCATCACAGGCATGTACC  99
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  ACCAAACAATAACAAACTGTTTGCAAGTGCTAGCA-CACAGGCATGTA-C  97

seq1  TCCAAACCTATTTTATATGGTGCTGGAACCCAAGGCAAAGCAAGAAGGAC  149
      |||||||||||||||||| |||||||||||||||  ||||||||||||||
seq2  TCCAAACCTATTTTATAT-GTGCTGGAACCCAAGCAAAAGCAAGAAGGAC  146

seq1  AGCAGAGTCTGGCTGTTTCCCACAAGTGTGACTACCAGCAAGGCCATTGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGTCTGGCTGTTTCCCACAAGTGTGACTACCAGCAAGGCCATTGC  196

seq1  AAGACCAAGCTCCCTTGACTCTACATCCAGTGCTCCCACTAACGAGGATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAAGCTCCCTTGACTCTACATCCAGTGCTCCCACTAACGAGGATC  246

seq1  ACCACCTACTCACTAATGGCTCTGTGACAGTGGATAATGATTGTCAACTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTACTCACTAATGGCTCTGTGACAGTGGATAATGATTGTCAACTT  296

seq1  GATGGAATCTAGAATTACCTAGATGATAAACCTGTGGACACATCTGCAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAATCTAGAATTACCTAGATGATAAACCTGTGGACACATCTGCAGG  346

seq1  GGAATTTCTAGGTAGCACCAAATAAAAGGAAAGACTCACCCTAAGTGTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTCTAGGTAGCACCAAATAAAAGGAAAGACTCACCCTAAGTGTTG  396

seq1  GTAGCACCGTTCTGTAGGTTGGTTCCTGGGCTGAATAAAATGGAGAAAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACCGTTCTGTAGGTTGGTTCCTGGGCTGAATAAAATGGAGAAAGC  446

seq1  AACTGAGCACCAGGATCCATCTCTCTCTGCTCCTGACTACAGAGGTGTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGCACCAGGATCCATCTCTCTCTGCTCCTGACTACAGAGGTGTTT  496

seq1  AGGTTTGGCAGTCGTGGTCAAGATTCAGCCCGTGGTTGACCCATCCTTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGGCAGTCGTGGTCAAGATTCAGCCCGTGGTTGACCCATCCTTGT  546

seq1  CTCTTCTCAGCACACAACCCTTCCCCATATCTGTCATGCAGGCTGCCAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCAGCACACAACCCTTCCCCATATCTGTCATGCAGGCTGCCAGC  596

seq1  ACTAGAGACAGACTCCTGCTCTGTCTAGTGTCAGGGTCCCAGTACTTTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGACAGACTCCTGCTCTGTCTAGTGTCAGGGTCCCAGTACTTTCC  646

seq1  CAATGTCAGCTTGAAATTCCTGGTGAAAATTCCAGTTCCTTGGGGTCTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCAGCTTGAAATTCCTGGTGAAAATTCCAGTTCCTTGGGGTCTAT  696

seq1  TGTCACAGTCCTCAGAAAAACTGAAGGGAAGGCACAAGTGTGTCTTTAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGTCCTCAGAAAAACTGAAGGGAAGGCACAAGTGTGTCTTTAGA  746

seq1  ACAACCTTGGTCTTGCCACTGAAAGAACGTAGTGGGGAAACCCTCACTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTTGGTCTTGCCACTGAAAGAACGTAGTGGGGAAACCCTCACTGA  796

seq1  ACTCCCGATTCGGCCAGCACCCAAGGAATCACGAGAGACCGTTGGATGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCGATTCGGCCAGCACCCAAGGAATCACGAGAGACCGTTGGATGCA  846

seq1  AATACATGAGGTAGTTTAATGTGGGTGCTCTGGGCCAACAGGTATCTTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATGAGGTAGTTTAATGTGGGTGCTCTGGGCCAACAGGTATCTTAC  896

seq1  ACAGGAGACAGCAGTTGTTGGCCACGAGACTCGAAAGCTAGGGGTTTTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGACAGCAGTTGTTGGCCACGAGACTCGAAAGCTAGGGGTTTTTA  946

seq1  AAGAAAATGGTCTGGGACTGGGGGAGGAATTGGAGCGGATTTACATGATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATGGTCTGGGACTGGGGGAGGAATTGGAGCGGATTTACATGATT  996

seq1  GGTTCATTTAAACTTCAGCAGAATGATTACACATCAGAAAAAGAGTATGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATTTAAACTTCAGCAGAATGATTACACATCAGAAAAAGAGTATGT  1046

seq1  TCAGGTCAGGGCATCAGGAATTC  1072
      |||||||||||||||||||||||
seq2  TCAGGTCAGGGCATCAGGAATTC  1069

seq1: chr12_23788045_23789403
seq2: B6Ng01-165M06.g_71_1101

seq1  GAATTCAAACCCATGACCTTCGACTTGGAAGAATACTCCAACCCCTATTA  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTCATGACCTTCGACTTGGAAGAATACTCCAACCCCTATTA  50

seq1  AGCATCCTGTTCCCTAAGCTTGTACAATTAGGGACACTCCCAGTTACCTG  100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCTGTCCCCTAAGCTTGTACAATTAGGGACACTCCCAGTTACCTG  100

seq1  AAGACAGTTTTACAGTGCTAGGCCAGGCTTCACCCTGAGAAAATCATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGTTTTACAGTGCTAGGCCAGGCTTCACCCTGAGAAAATCATAGA  150

seq1  ATGCAGTGATGTTCTGTGGGAAGTGGGGGATACCCAAGAGAACCAGAGGT  200
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTGATGTGCTGTGGGAAGTGGGGGATACCCAAGAGAACCAGAGGT  200

seq1  ACAGATGGTTCTCAGAGAGTACTCCAACCCACAGCTGACTGAACACAGAC  250
      ||||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  ACAGATGGTCCTCAGAGAGTACTCCAACCCACAGCTGACTGATCACAGAC  250

seq1  ACAATTGGGCCAATAAATCATCTGAATTAGGACATTTTCGTCTATATCTC  300
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  ACAATTAGGCCAATAAATCATCTGAATTAGGACATTTTCATCTATATCTC  300

seq1  ATTCAGAAATTCTCAGCTGTATTTTATTTTATTTTTTTAAACATTTTGTG  350
      |||||||||||||||||                                 
seq2  ATTCAGAAATTCTCAGC---------------------------------  317

seq1  TTCATTTTAATGATAAAAAAGGGCACAGGATAAAAAAAAACCTTATATTT  400
                                                        
seq2  --------------------------------------------------  317

seq1  CACTTATATTGCATAACGAGCTAACCAAACTGGACATGGGGGATGAATTA  450
                                                        
seq2  --------------------------------------------------  317

seq1  TAAAACAAATCATTTTATGTATCCTCCTAGGACTATTCTTCAATTAGACT  500
                                                        
seq2  --------------------------------------------------  317

seq1  TCTGTATTTCAAATAAGGGTGAGGTATAGTACACTAAGAGGCAAAAAAGA  550
                                                        
seq2  --------------------------------------------------  317

seq1  ATAGTGCCAAAGTAACAGATCCCCAAAACCAGACCCCATGTCAGAACACA  600
                                                        
seq2  --------------------------------------------------  317

seq1  TCATAGAGCAAACATTTATCAGATCAGAGCCTCAATGTATTTTAAAAACC  650
                                         ||||||||||||| |
seq2  -----------------------------------TGTATTTTAAAAATC  332

seq1  CAGAGTTTCTGAAGACACTAGTCAAAAATCACACCCTCTAACTCCCCGAG  700
      ||||| ||||||||||||||||||||||||| ||||||||||| ||| ||
seq2  CAGAGATTCTGAAGACACTAGTCAAAAATCATACCCTCTAACT-CCCTAG  381

seq1  GCAAGAGGTATGGTTACTGCTGCTGCCAACAATACAGCCTAGAGAAACTT  750
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGGCATGGTTACTGCTGCTGCCAACAATACAGCCTAGAGAAACTT  431

seq1  TACAAAAACCTTTTGTGGGTCTGAAAAGAAGGGAATGTGAGGGACATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAACCTTTTGTGGGTCTGAAAAGAAGGGAATGTGAGGGACATTAT  481

seq1  AAGCCCAACATGGGAAATAAAAGTGGTCTCCTGCTGCCATAGGACAGTAG  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGCCCAACATGGGAAATAAAAGTGGTCTCTTGCTGCCATAGGACAGTAG  531

seq1  ACCACTCCATCTTTTTAAGGCTCCCATGTACAAATATGCTGTATGAGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCCATCTTTTTAAGGCTCCCATGTACAAATATGCTGTATGAGGTA  581

seq1  GCAGCTGAGGTCAGACATTATGTATGGCTTCTGGTATTTTACCAGCACTG  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGGGTCAGACATTATGTATGGCTTCTGGTATTTTACCAGCACTG  631

seq1  CCTGTGAATAAGTTCAGCCTTCAAAAATAGCTGTGCCAGTGGGTAGCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAATAAGTTCAGCCTTCAAAAATAGCTGTGCCAGTGGGTAGCTTT  681

seq1  TATTCCTGCGCAAGGCAATAAACTGCAATCCCAAAATTCTGCAACTCTCT  1050
      |||||| |||||||||||||||||||||||| |||| |||||||||||||
seq2  TATTCCGGCGCAAGGCAATAAACTGCAATCCTAAAACTCTGCAACTCTCT  731

seq1  GCCACTTTCCACCATTGTGAACATCCTTCCATTTAGTGTCTCAGGGACAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTTCCACCATTGTGAACATCCTTCCATTTAGTGTCTCAGGGACAC  781

seq1  ACCTATCTCAGCATGTATAACTCAAGGGTATTGTGTTATAGTACAGGCTC  1150
      | ||||||||||||||||||||  ||||||||||||||||| ||||| ||
seq2  AACTATCTCAGCATGTATAACTTGAGGGTATTGTGTTATAGCACAGGATC  831

seq1  TCCTTCACAAGGCAATTTTCTGATCCCTCTGCCTCTCTTCCCACCTATAA  1200
      ||||||||||||||||||||||||||||||||||||||| ||| ||||||
seq2  TCCTTCACAAGGCAATTTTCTGATCCCTCTGCCTCTCTT-CCATCTATAA  880

seq1  GTCCTTTTGTTCTTCTCTGAAATTGTAGACTATTCCCTGCGACTTTTCAA  1250
      ||||||||||||||||||| ||||| ||| ||||||||| ||| ||||||
seq2  GTCCTTTTGTTCTTCTCTG-AATTGAAGA-TATTCCCTGTGAC-TTTCAA  927

seq1  GGTTTTATTTTTGGAGACATGGTCTCTGTGATGCCTTGGGAAGTTAAAAG  1300
       |||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  -GTTTTATTTTTGGATACATGGTCTCTGTGATGCCTTGGG-AGTTAAAAG  975

seq1  AAAGTAGTGTTTTTCCTTGACATAATATAGTACCAGTCAAACTAATCAAT  1350
      |||| ||||||||| |||||| |||||||||||||||| |||||||||||
seq2  AAAG-AGTGTTTTT-CTTGAC-TAATATAGTACCAGTC-AACTAATCAAT  1021

seq1  G-TGTCTAAC  1359
      | ||||||||
seq2  GTTGTCTAAC  1031