BAC Information

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BAC

Clone NameB6Ng01-166F14
Chromosome15 (Build37)12 (Build37)
Map Location 39,346,683 - 39,346,82485,880,290 - 85,881,286
singlet/doubletsingletsinglet
Overlap geneRims2
Upstream geneAzin1, Siah1-ps2, Atp6v1c1, Baalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215
Downstream geneTm7sf4, Dpys, Lrp12, LOC100039130, LOC670013
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166F14.bB6Ng01-166F14.g
ACCDH958155DH958156
length596996
definitionDH958155|Mus musculus domesticus DNA, BAC clone: B6Ng01-166F14, 5' end.DH958156|Mus musculus domesticus DNA, BAC clone: B6Ng01-166F14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,346,683 - 39,346,824)(85,880,290 - 85,881,286)
sequence
gaattcccagtatctctgtagtctaggcggaccttgaactttgtggtctt
cttgcctcagcctcccaaatagctgagatagcaggcctgtgtcaccaggg
agcttcaagtggcctcggtttacctatatacagtaaacttcacccctcct
aatgagccaggagtgtttgtgcacacccagtaagcagggggttggggcgt
gaagatttcaaggccagtttcagctacatagtgagtctttagttgtttgg
ttgttctgtagtaggttctgctgttgctttgttttgttttgttttgagac
aagatctcactatgtagccctggctggcctcaaatctaagtgctgagttt
acaggtgtaagtaagcctccatgcctggattacatagtgagtttgaaatc
agcctgggcaacgtagtaagacacggtcttaaaataaatgaatgaagccc
agcagcagtgatatacatctttaatcctggtactcaggaggcagagcagg
cagatctcttgtgaattcaaggctagcctggtctacagagcgagttccaa
gacagccaaggctacacagagaaaccctgtctctgatgatgatgat
gaattccctcagatggaagtgagggaccactggctggtttatctcttaag
cacatttctatgttatctgcacacttgtaaccattagcctcaggtagcta
ttaagtctaaattaaaagtaagtaaatatttaaaaattcagccccagcag
aaatacatgtgtctgcctaccatgaagtgaggaagccaaaaggcaacgtt
gtaagatcctgcttcatgctgtttggacttagaccttccaaactgtgatc
aaataaaatctctctccctttccatgtctgtctctgtctccccctccctc
catccctccctcctctttttttttttttaatttaaagatgtctatatgtc
tgtatctgggtgatgatgcatgtggatgtaatacctgtagtggccagaag
agggcatcagatccccaggagctggagtacctacattgtgggtgctaaga
accaaattcacagggggctggtgagatggctcagtgggttagagcacccg
actgctcttccgaaggtgcagagttcaaatcccagcaaccacatggtggc
tcacaaccatccgtaacaagatctgaccccctcttctggagtgtctgaag
acagctacaatgtacttacatataataaataaacagctacaatgtactta
catataataaataaataaataactctgaagacagctacaatgtacttaca
tataataaataaacagctacaatgtacttacatataataaataaataaat
aaataaataaaaaaaagaaccaaattcacaagagcagtacgtacttctaa
ccactgaaccacctctccatcctcttaaaaaaaaaaaaaaaaaaaaggcc
acatttcaggggttcaatggccacacgtggccaatggccaccatggtttg
tctgtgtaagaagaagaaaccagtgttcccgcccttgttcatggcgctct
tctgccattatagcagtattgttaggcttatgggggggtggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_39346683_39346824
seq2: B6Ng01-166F14.b_514_641 (reverse)

seq1  ATCATCATCATCATTATTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTA  50
      |||||||||||||                |||||||||||||||||||||
seq2  ATCATCATCATCA----------------GAGACAGGGTTTCTCTGTGTA  34

seq1  GCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGTCTCGAACTC  100
      ||| |||||||| |||||||| |||||||||||||||| | || ||| ||
seq2  GCCTTGGCTGTCTTGGAACTCGCTCTGTAGACCAGGCTAGCCTTGAATTC  84

seq1  ---AGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAG  142
         ||| ||||||||| ||||||||||  ||| |  |||||||||
seq2  ACAAGAGATCTGCCTG-CTCTGCCTCCTGAGTACCAGGATTAAAG  128

seq1: chr12_85880290_85881286
seq2: B6Ng01-166F14.g_68_1063

seq1  GAATTCCCTCAGATGGAAGTGAGGGACCACTGGCTGGTTTATCTCTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCAGATGGAAGTGAGGGACCACTGGCTGGTTTATCTCTTAAG  50

seq1  CACATTTCTATGTTATCTGCACACTTGTAACCATTAGCCTCAGGTAGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTCTATGTTATCTGCACACTTGTAACCATTAGCCTCAGGTAGCTA  100

seq1  TTAAGTCTAAATTAAAAGTAAGTAAATATTTAAAAATTCAGCCCCAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCTAAATTAAAAGTAAGTAAATATTTAAAAATTCAGCCCCAGCAG  150

seq1  AAATACATGTGTCTGCCTACCATGAAGTGAGGAAGCCAAAAGGCAACGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATGTGTCTGCCTACCATGAAGTGAGGAAGCCAAAAGGCAACGTT  200

seq1  GTAAGATCCTGCTTCATGCTGTTTGGACTTAGACCTTCCAAACTGTGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATCCTGCTTCATGCTGTTTGGACTTAGACCTTCCAAACTGTGATC  250

seq1  AAATAAAATCTCTCTCCCTTTCCATGTCTGTCTCTGTCTCCCCCTCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATCTCTCTCCCTTTCCATGTCTGTCTCTGTCTCCCCCTCCCTC  300

seq1  CATCCCTCCCTCCTCTTTTTTTTTTTTTAATTTAAAGATGTCTATATGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCCCTCCTCTTTTTTTTTTTTTAATTTAAAGATGTCTATATGTC  350

seq1  TGTATCTGGGTGATGATGCATGTGGATGTAATACCTGTAGTGGCCAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGGGTGATGATGCATGTGGATGTAATACCTGTAGTGGCCAGAAG  400

seq1  AGGGCATCAGATCCCCAGGAGCTGGAGTACCTACATTGTGGGTGCTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATCAGATCCCCAGGAGCTGGAGTACCTACATTGTGGGTGCTAAGA  450

seq1  ACCAAATTCACAGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATTCACAGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCG  500

seq1  ACTGCTCTTCCGAAGGTGCAGAGTTCAAATCCCAGCAACCACATGGTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCTTCCGAAGGTGCAGAGTTCAAATCCCAGCAACCACATGGTGGC  550

seq1  TCACAACCATCCGTAACAAGATCTGACCCCCTCTTCTGGAGTGTCTGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCATCCGTAACAAGATCTGACCCCCTCTTCTGGAGTGTCTGAAG  600

seq1  ACAGCTACAATGTACTTACATATAATAAATAAACAGCTACAATGTACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTACAATGTACTTACATATAATAAATAAACAGCTACAATGTACTTA  650

seq1  CATATAATAAATAAATAAATAACTCTGAAGACAGCTACAATGTACTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATAAATAAATAAATAACTCTGAAGACAGCTACAATGTACTTACA  700

seq1  TATAATAAATAAACAGCTACAATGTACTTACATATAATAAATAAATAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAATAAACAGCTACAATGTACTTACATATAATAAATAAATAAAT  750

seq1  AAATAAATAAAAAAAAGAACCAAATTCACAAGAGCAGTACGTACTTCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAAAAAAAGAACCAAATTCACAAGAGCAGTACGTACTTCTAA  800

seq1  CCACTGAACCACCTCTCCATCCTCTTAAAAAAAAAAAAAAAAAAAAAAGA  850
      ||||||||||||||||||||||||||  ||||||||||||||||||||| 
seq2  CCACTGAACCACCTCTCCATCCTCTT--AAAAAAAAAAAAAAAAAAAAGG  848

seq1  CCACATTTCAAGGGTTCAATGGCCACACGTGGCCAATGGCCACCAT-GTT  899
      |||||||||| ||||||||||||||||||||||||||||||||||| |||
seq2  CCACATTTCAGGGGTTCAATGGCCACACGTGGCCAATGGCCACCATGGTT  898

seq1  TGTCTGTGT-AGAAGAAGAAACCAAGTGTTCCCGCCCTTGTTCATGGCGC  948
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  TGTCTGTGTAAGAAGAAGAAACC-AGTGTTCCCGCCCTTGTTCATGGCGC  947

seq1  TACTCTGCCATTATAGCAGTATTGTTAGGGCTTAT-GGGGGGTGGGGGGG  997
      |  |||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  TCTTCTGCCATTATAGCAGTATTGTTA-GGCTTATGGGGGGGTGGGGGGG  996