BAC Information

Click to search

BAC

Clone NameB6Ng01-166F17
Chromosome12 (Build37)
Map Location 26,700,512 - 26,854,051
singlet/doubletdoublet
Overlap genenone
Upstream geneC330002I19Rik, Id2, LOC100042973, LOC100042974, LOC668726
Downstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166F17.bB6Ng01-166F17.g
ACCDH958161DH958162
length4301,168
definitionDH958161|Mus musculus domesticus DNA, BAC clone: B6Ng01-166F17, 5' end.DH958162|Mus musculus domesticus DNA, BAC clone: B6Ng01-166F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,700,512 - 26,700,942)(26,852,891 - 26,854,051)
sequence
gaattctaaccccttcataggcatgcacccatgcctggcagcctccattt
acaccctacataccctgtaacagctccatcagccacgaaccaagccttta
gctcatgagctcttgaggaacatttaagaaccaactgtaacgccagcacc
tcctattctttgcaaggaagtcattgaatgacatggttcactgaaatggg
ttaaaatgatttcaagatctacaaataggacaataggtaactgataaaaa
cagatctaataaagagagaagctcacaaaatcctgagaatctgccaaaga
tatatgtccagaacagtcaagaaaaaagggtgattggctggagaaccaga
attcttgatagatagatagatagatagatagatagatagatagatagata
gatagatagatagatagatagatattaaat
gaattcaaatcttaattctacacattagaaagccaagaaattagcatgta
aaatggctaaggagtttacattcctctgcttattgtcaaaaatgtaaatg
taggtgctgaagcatgggctcatttcaaagcaagaagggtcatggatgaa
ctgagtgaaagaaaggtgtctctcgctgttagaagagacagggactgtgg
ctgagccttgtgatggagttttagccatttctgtgaatttgacagtgtca
tagacataacccaatttgatcaagtcatatagagaattatgaaaccatgt
tgtttgtaaaacaagaatgaaaatcatctggccaaataggcttttcttaa
ggaaatggttagacataaataatgtaaaataaactcatagttcagcacac
atgttggataaattagactgatagcaatattctaaaaatcttatttttac
cttcataaagaaaggaaaattatttaccaacattttttttccatttttta
ttaggtatttaactcatttacatttccaatgctataccaaaagtccccca
tatccacccacccccactcccctgcccacccactccccctttttggccct
ggtgttcccctgtactggggcatataaagtttgcaagtccaatgggcctc
tctttccagtgatggccgactaggccatcttttgatatatatgcagctag
agtcaaaagctccggggtactggttagttcataatgttgttccaatttac
caacattttgagaaacctcataaaatacattgatcacaagaattacatgg
aatagaaatgtagtaactggttccttgatgaattgctttaatttgaacac
aactctccattagacatctcccccactacacatgccataggtttctgttt
tagtcactgttctattgctgtgagagacaccaaggcaacctttgaatgga
agtgcttacattggaggcttccttatggtttcagaaggttagtctgtatt
atcatgggtagggagtatcggaaccaggcaagtaagtaaggaattgggat
gggtagcctaaacatccaatcctattggtcagaatggaaggccgagagaa
agagagagaggaaaatctggggcgtgtgggctttagataagtgtccaata
cacatctttgtggacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_26700512_26700942
seq2: B6Ng01-166F17.b_45_474

seq1  GAATTCATAACCCCTTCATAGGCATGCACCCATGCCTGGCAGCCTCCATT  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTC-TAACCCCTTCATAGGCATGCACCCATGCCTGGCAGCCTCCATT  49

seq1  TACACCCTACATACCCTGTAACAGCTCCATCAGCCACGAACCAAGCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCTACATACCCTGTAACAGCTCCATCAGCCACGAACCAAGCCTTT  99

seq1  AGCTCATGAGCTCTTGAGGTACATTTAAGAACCAACTGTAACACCAGCAC  150
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  AGCTCATGAGCTCTTGAGGAACATTTAAGAACCAACTGTAACGCCAGCAC  149

seq1  CTCCTATTCTTTGCAAGGAAGTCATTGAATGACATGGTTCACTGAAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATTCTTTGCAAGGAAGTCATTGAATGACATGGTTCACTGAAATGG  199

seq1  GTTAAAATGATTTCAAGATCTACAAATAGGACAATAGGTAACTGATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAATGATTTCAAGATCTACAAATAGGACAATAGGTAACTGATAAAA  249

seq1  ACAGATCTAATAAAGAGAGAAGCTCACAAAATCCTGAGAATCTGCCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCTAATAAAGAGAGAAGCTCACAAAATCCTGAGAATCTGCCAAAG  299

seq1  ATATATGTCCAGAGCAGTCAAGAAAAAAGGGTGATTGGCTGGAGAACCAG  350
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATATATGTCCAGAACAGTCAAGAAAAAAGGGTGATTGGCTGGAGAACCAG  349

seq1  AATTCTTGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT  399

seq1  AGATAGATAGATAGATAGATAGATATTAAAT  431
      |||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGATAGATATTAAAT  430

seq1: chr12_26852891_26854051
seq2: B6Ng01-166F17.g_67_1234 (reverse)

seq1  TGTGT-CACAAAGAT-AGTCTTGGACA-TTTTCTAAAGGCCACACCAGAC  47
      ||||| |||||||||  || ||||||| || ||||||| ||||| |   |
seq2  TGTGTCCACAAAGATGTGTATTGGACACTTATCTAAAGCCCACA-CGCCC  49

seq1  CAG-TTTTCCTCTCTCTCTTTCTCTCTGCC-TCCATCTTGA-CAATTAGA  94
      ||| |||||||||||||||||||||| ||| |||||  ||| ||||  ||
seq2  CAGATTTTCCTCTCTCTCTTTCTCTCGGCCTTCCATTCTGACCAATAGGA  99

seq1  TGTGATGTTTTAGCTA-CCATCCCAATGCCTTACTTCCTTGCCT-GCTCC  142
      |  |||||||  |||| |||||||||| |||||||| ||||||| | |||
seq2  TTGGATGTTTAGGCTACCCATCCCAATTCCTTACTTACTTGCCTGGTTCC  149

seq1  TATACTCCCTA-CCATGATAATACAGACTAACCTTCTGAAACCATAAGGA  191
       |||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATACTCCCTACCCATGATAATACAGACTAACCTTCTGAAACCATAAGGA  199

seq1  AGCCTCCAATGTAAGCACTTCCATTCAAAGGTTGCCTTGGTGTCTTCTCA  241
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGCCTCCAATGTAAGCACTTCCATTCAAAGGTTGCCTTGGTGTC-TCTCA  248

seq1  CAGCAATAGAACAGTGACTAAAACAGAAACCTATGGCATGTGTAGTGGGG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATAGAACAGTGACTAAAACAGAAACCTATGGCATGTGTAGTGGGG  298

seq1  GAGATGTCTAATGGAGAGTTGTGTTCAAATTAAAGCAATTCATCAAGGAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTCTAATGGAGAGTTGTGTTCAAATTAAAGCAATTCATCAAGGAA  348

seq1  CCAGTTACTACATTTCTATTCCATGTAATTCTTGTGATCAATGTATTTTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTACTACATTTCTATTCCATGTAATTCTTGTGATCAATGTATTTTA  398

seq1  TGAGGTTTCTCAAAATGTTGGTAAATTGGAACAACATTATGAACTAACCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTTCTCAAAATGTTGGTAAATTGGAACAACATTATGAACTAACCA  448

seq1  GTACCCCGGAGCTTTTGACTCTAGCTGCATATATATCAAAAGATGGCCTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCCGGAGCTTTTGACTCTAGCTGCATATATATCAAAAGATGGCCTA  498

seq1  GTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATG  548

seq1  CCCCAGTACAGGGGAACACCAGGGCCAAAAAGGGGGAGTGGGTGGGCAGG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTACAGGGGAACACCAGGGCCAAAAAGGGGGAGTGGGTGGGCAGG  598

seq1  GGAGTGGGGGTGGGTGGATATGGGGGACTTTTGGTATAGCATTGGAAATG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGGGGTGGGTGGATATGGGGGACTTTTGGTATAGCATTGGAAATG  648

seq1  TAAATGAGTTAAATACCTAATAAAAAATGGAAAAAAAATGTTGGTAAATA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAGTTAAATACCTAATAAAAAATGGAAAAAAAATGTTGGTAAATA  698

seq1  ATTTTCCTTTCTTTATGAAGGTAAAAATAAGATTTTTAGAATATTGCTAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTTTCTTTATGAAGGTAAAAATAAGATTTTTAGAATATTGCTAT  748

seq1  CAGTCTAATTTATCCAACATGTGTGCTGAACTATGAGTTTATTTTACATT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTAATTTATCCAACATGTGTGCTGAACTATGAGTTTATTTTACATT  798

seq1  ATTTATGTCTAACCATTTCCTTAAGAAAAGCCTATTTGGCCAGATGATTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTCTAACCATTTCCTTAAGAAAAGCCTATTTGGCCAGATGATTT  848

seq1  TCATTCTTGTTTTACAAACAACATGGTTTCATAATTCTCTATATGACTTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTGTTTTACAAACAACATGGTTTCATAATTCTCTATATGACTTG  898

seq1  ATCAAATTGGGTTATGTCTATGACACTGTCAAATTCACAGAAATGGCTAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTGGGTTATGTCTATGACACTGTCAAATTCACAGAAATGGCTAA  948

seq1  AACTCCATCACAAGGCTCAGCCACAGTCCCTGTCTCTTCTAACAGCGAGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCATCACAAGGCTCAGCCACAGTCCCTGTCTCTTCTAACAGCGAGA  998

seq1  GACACCTTTCTTTCACTCAGTTCATCCATGACCCTTCTTGCTTTGAAATG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTTTCTTTCACTCAGTTCATCCATGACCCTTCTTGCTTTGAAATG  1048

seq1  AGCCCATGCTTCAGCACCTACATTTACATTTTTGACAATAAGCAGAGGAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATGCTTCAGCACCTACATTTACATTTTTGACAATAAGCAGAGGAA  1098

seq1  TGTAAACTCCTTAGCCATTTTACATGCTAATTTCTTGGCTTTCTAATGTG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACTCCTTAGCCATTTTACATGCTAATTTCTTGGCTTTCTAATGTG  1148

seq1  TAGAATTTAGATTTGAATTC  1161
      ||||||| ||||||||||||
seq2  TAGAATTAAGATTTGAATTC  1168