BAC Information

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BAC

Clone NameB6Ng01-166M10
Chromosome12 (Build37)
Map Location 52,627,589 - 52,756,741
singlet/doubletdoublet
Overlap geneLOC100039578, Coch, Strn3
Upstream genePrkcm, LOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390
Downstream geneAp4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl, Arhgap5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166M10.bB6Ng01-166M10.g
ACCDH958458DH958459
length1,1281,131
definitionDH958458|Mus musculus domesticus DNA, BAC clone: B6Ng01-166M10, 5' end.DH958459|Mus musculus domesticus DNA, BAC clone: B6Ng01-166M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,755,600 - 52,756,741)(52,627,589 - 52,628,734)
sequence
gaattctgttttcaagtctaggacttttagtgttttaatcctgctaaagc
acatctgaggtcttttgatttttttttaaaagcagatagagcacctgagt
tactgacctaacagttaaagaagaaataatatgtagtaaattgttaactt
ttttcttgtcttatgtaaaatattttcatgtgtaaatttatttttgaaaa
aaaaaaaaaaacgtgaacactaacaataagttgaaataatgtatgcgaaa
cttcccctctttaatttccagaggaaaccaaagatgtggaggctcctcca
gcacctcagaatagtcaactaacatggaagcaaggcagacagctattaag
acagtgagtaatgatttcaattttaaaaagttacaaaagtgcttatattg
agtagaagtaaaaatatgcttcactctactgtatggttttcataatgctg
cttttatgagacccatttgtatgtatgtatgtaggcatgggcataggcac
ttgccacagctgcttttggagatcagggacagctttcagcattgagtctc
ctttcacctttgggtcacagggattggatttggttatcaggcttggctat
aggtcactctgcacgctcagccattcctaaaagataacattgacttcttt
ctattttttcatcccatccccttctcttcgctttgcttctcttctctttg
attttctttgccccaccctgccccctcccctctcctctcttcttttattt
cttatgtggtagaaaatctgaaagaaaaaaaaaaactggatgaaggcttc
aactaaagtagtatggagtgtatggaattgggctgcagaaatgacgtatt
taaaagcattggatgctcttgcatggattccagttttgattcttagcatc
cacattgtggctcacagatatctatgactccagttccagggatcaatgcc
ctatccagcatctactggccatctaccctagaagctgtgtgcctgtatac
tttcatacatgtaggaaagtacccggatacataaatagatgcgccattca
tctagcacactctcactacgacgtttacatgtaaggttctcttgtagtca
ggaggaaggttacagagaaggttaaatg
gaattctatggactgacttaagataaattaaagctgagaagaaaagcact
gacctgaaatatagctcaatttagaacagtccagaatgacaagtgaagaa
agaggaattagacattcacgaatagtgagagaaatatgaaggagactact
ccgagcaggagagggagtgtggacagaagatcaagggattccaaacccaa
cagaaggttcaggaagggcttacagaccctcataagagagctaaaatcaa
aacaggacaacagcagctgcaaggcaaaattataaaccaaaacaaaccaa
aaaaaaaaaaaaaaaaaaaaagcaagacaaaaacctaagctattgtctta
gttaggtttatattgctatgaggagacaccatgaccaagacaactcttat
aaaggacaacatttaattggggctaacttacaggtttagaatattagtcc
attatcatcaaggtagggagcatggcagtgtgcaggcagatgtgacactg
gaggagctgagagttctacgtcttcatctaaaggaaaccaggagcagact
gtcttctaggcagctaagaggagggtctcaaagtccacccccacattgat
acatttcctccaacaaggccacacctcctcactaccactccctgtgggcc
aagcatatttaaaccaccacagctatattgttcaggggtgagtatggaag
cagttcaatttttaatcattttttttaaaatatttcatttattatgtgtg
tgtgtgtgtgtacagctttagactctgttctctctttccaccatcatttc
tagggatcaaatacaggtcatcaagttgtgcagcaaaagctcttgccctg
caagccaccccattggttccaggaaaatattcttaaagaacaagaactta
ctatttaaaagttctagagagcattacagggttgtgaccaggaatggaga
aaagtatctttgtgctggtcagtgaggcccttcatccgagtagtggctta
tcagtaagctgtgtgcacatttctgcatagatgacaccatgcactacagg
aaaggctgctatagaagcatgtgatgagggtctccttgcgactgttggta
acagagtctttactgaaggaaatgtttcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_52755600_52756741
seq2: B6Ng01-166M10.b_45_1172 (reverse)

seq1  CATTTAACACTTCTCTGTAACTTTCATACACTGACTTACAAGAGAACCCC  50
      |||||||| |||||||||||| ||| |   ||||| |||||||||| || 
seq2  CATTTAAC-CTTCTCTGTAACCTTCCT--CCTGAC-TACAAGAGAA-CCT  45

seq1  TACATGTAAACGTCGTAGTGAGAGTGTGCCTTAGATGAATGGCGCCATAC  100
      |||||||||||||||||||||||||||||  ||||||||||||| ||| |
seq2  TACATGTAAACGTCGTAGTGAGAGTGTGC--TAGATGAATGGCG-CAT-C  91

seq1  TAATTTATGTATCCGGGTACTTTTCCTACATGTATGAAAGTATACCAGGC  150
      | |||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  T-ATTTATGTATCCGGGTAC-TTTCCTACATGTATGAAAGTATA-CAGGC  138

seq1  ACACAGCTTCTAGGGTAAGATGGCCAGTAGATGCTGGATAAGGGCATTGA  200
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  ACACAGCTTCTAGGGT-AGATGGCCAGTAGATGCTGGAT-AGGGCATTGA  186

seq1  TCCCTGGAACTGGAGTCATAGATATCTGTGAGCCACAATGTGGATGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGAACTGGAGTCATAGATATCTGTGAGCCACAATGTGGATGCTAA  236

seq1  GAATCAAAACTGGAATCCATGCAAGAGCATCCAATGCTTTTAAATACGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAAACTGGAATCCATGCAAGAGCATCCAATGCTTTTAAATACGTC  286

seq1  ATTTCTGCAGCCCAATTCCATACACTCCATACTACTTTAGTTGAAGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCAGCCCAATTCCATACACTCCATACTACTTTAGTTGAAGCCTT  336

seq1  CATCCAGTTTTTTTTTTTCTTTCAGATTTTCTACCACATAAGAAATAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGTTTTTTTTTTTCTTTCAGATTTTCTACCACATAAGAAATAAAA  386

seq1  GAAGAGAGGAGAGGGGAGGGGGCAGGGTGGGGCAAAGAAAATCAAAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGGAGAGGGGAGGGGGCAGGGTGGGGCAAAGAAAATCAAAGAGA  436

seq1  AGAGAAGCAAAGCGAAGAGAAGGGGATGGGATGAAAAAATAGAAAGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCAAAGCGAAGAGAAGGGGATGGGATGAAAAAATAGAAAGAAGT  486

seq1  CAATGTTATCTTTTAGGAATGGCTGAGCGTGCAGAGTGACCTATAGCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTATCTTTTAGGAATGGCTGAGCGTGCAGAGTGACCTATAGCCAA  536

seq1  GCCTGATAACCAAATCCAATCCCTGTGACCCAAAGGTGAAAGGAGACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATAACCAAATCCAATCCCTGTGACCCAAAGGTGAAAGGAGACTCA  586

seq1  ATGCTGAAAGCTGTCCCTGATCTCCAAAAGCAGCTGTGGCAAGTGCCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAAAGCTGTCCCTGATCTCCAAAAGCAGCTGTGGCAAGTGCCTAT  636

seq1  GCCCATGCCTACATACATACATACAAATGGGTCTCATAAAAGCAGCATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGCCTACATACATACATACAAATGGGTCTCATAAAAGCAGCATTA  686

seq1  TGAAAACCATACAGTAGAGTGAAGCATATTTTTACTTCTACTCAATATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACCATACAGTAGAGTGAAGCATATTTTTACTTCTACTCAATATAA  736

seq1  GCACTTTTGTAACTTTTTAAAATTGAAATCATTACTCACTGTCTTAATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTTGTAACTTTTTAAAATTGAAATCATTACTCACTGTCTTAATAG  786

seq1  CTGTCTGCCTTGCTTCCATGTTAGTTGACTATTCTGAGGTGCTGGAGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCCTTGCTTCCATGTTAGTTGACTATTCTGAGGTGCTGGAGGAG  836

seq1  CCTCCACATCTTTGGTTTCCTCTGGAAATTAAAGAGGGGAAGTTTCGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACATCTTTGGTTTCCTCTGGAAATTAAAGAGGGGAAGTTTCGCAT  886

seq1  ACATTATTTCAACTTATTGTTAGTGTTCACGTTTTTTTTTTTTTTTCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTTCAACTTATTGTTAGTGTTCACGTTTTTTTTTTTTTTTCAAA  936

seq1  AATAAATTTACACATGAAAATATTTTACATAAGACAAGAAAAAAGTTAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTTACACATGAAAATATTTTACATAAGACAAGAAAAAAGTTAAC  986

seq1  AATTTACTACATATTATTTCTTCTTTAACTGTTAGGTCAGTAACTCAGGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACTACATATTATTTCTTCTTTAACTGTTAGGTCAGTAACTCAGGT  1036

seq1  GCTCTATCTGCTTTTAAAAAAAAATCAAAAGACCTCAGATGTGCTTTAGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATCTGCTTTTAAAAAAAAATCAAAAGACCTCAGATGTGCTTTAGC  1086

seq1  AGGATTAAAACACTAAAAGTCCTAGACTTGAAAACAGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAAAACACTAAAAGTCCTAGACTTGAAAACAGAATTC  1128

seq1: chr12_52627589_52628734
seq2: B6Ng01-166M10.g_69_1199

seq1  GAATTCTATGGACTGACTTAAGATAAATTAAAGCTGAGAAGAAAAGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGGACTGACTTAAGATAAATTAAAGCTGAGAAGAAAAGCACT  50

seq1  GACCTGAAATATAGCTCAATTTAGAACAGTCCAGAATGACAAGTGAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGAAATATAGCTCAATTTAGAACAGTCCAGAATGACAAGTGAAGAA  100

seq1  AGAGGAATTAGACATTCACGAATAGTGAGAGAAATATGAAGGAGACTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAATTAGACATTCACGAATAGTGAGAGAAATATGAAGGAGACTACT  150

seq1  CCGAGCAGGAGAGGGAGTGTGGACAGAAGATCAAGGGATTCCAAACCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCAGGAGAGGGAGTGTGGACAGAAGATCAAGGGATTCCAAACCCAA  200

seq1  CAGAAGGTTCAGGAAGGGCTTACAGACCCTCATAAGAGAGCTAAAATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGTTCAGGAAGGGCTTACAGACCCTCATAAGAGAGCTAAAATCAA  250

seq1  AACAGGACAACAGCAGCTGCAAGGCAAAATTATAAACCAAAACAAACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGACAACAGCAGCTGCAAGGCAAAATTATAAACCAAAACAAACCAA  300

seq1  AAAAAAAAAAAAAAAAAAAAAGCAAGACAAAAACCTAAGCTATTGTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAGCAAGACAAAAACCTAAGCTATTGTCTTA  350

seq1  GTTAGGTTTATATTGCTATGAGGAGACACCATGACCAAGACAACTCTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGTTTATATTGCTATGAGGAGACACCATGACCAAGACAACTCTTAT  400

seq1  AAAGGACAACATTTAATTGGGGCTAACTTACAGGTTTAGAATATTAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACAACATTTAATTGGGGCTAACTTACAGGTTTAGAATATTAGTCC  450

seq1  ATTATCATCAAGGTAGGGAGCATGGCAGTGTGCAGGCAGATGTGACACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATCAAGGTAGGGAGCATGGCAGTGTGCAGGCAGATGTGACACTG  500

seq1  GAGGAGCTGAGAGTTCTACGTCTTCATCTAAAGGAAACCAGGAGCAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCTGAGAGTTCTACGTCTTCATCTAAAGGAAACCAGGAGCAGACT  550

seq1  GTCTTCTAGGCAGCTAAGAGGAGGGTCTCAAAGTCCACCCCCACATTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTAGGCAGCTAAGAGGAGGGTCTCAAAGTCCACCCCCACATTGAT  600

seq1  ACATTTCCTCCAACAAGGCCACACCTCCTCACTACCACTCCCTGTGGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCTCCAACAAGGCCACACCTCCTCACTACCACTCCCTGTGGGCC  650

seq1  AAGCATATTTAAACCACCACAGCTATATTGTTCAGGGGTGAGTATGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATATTTAAACCACCACAGCTATATTGTTCAGGGGTGAGTATGGAAG  700

seq1  CAGTTCAATTTTTAATCATTTTTTTTAAAATATTTCATTTATTATGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAATTTTTAATCATTTTTTTTAAAATATTTCATTTATTATGTGTG  750

seq1  TGTGTGTGTGTACAGCTTTAGACTCTGTTCTCTCTTTCCACCATCATTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTACAGCTTTAGACTCTGTTCTCTCTTTCCACCATCATTTC  800

seq1  TAGGGATCAAATACAGGTCATCAAGTTTGTGCAGCAAAAGCTCTTGCCCT  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAGGGATCAAATACAGGTCATCAAG-TTGTGCAGCAAAAGCTCTTGCCCT  849

seq1  GCAAGCCACCCCATTGGTTCCAGGAAAATATTCTTAAAGAACAAGAACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCACCCCATTGGTTCCAGGAAAATATTCTTAAAGAACAAGAACTT  899

seq1  ACTATTTAAAAGTTCTAGAGAGCATTACAGGGTTGTGACCAGGAATGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTAAAAGTTCTAGAGAGCATTACAGGGTTGTGACCAGGAATGGAG  949

seq1  AAAAAGTATCTTTGGTGCTGGTCAGGTGAGGGCCCTTCATCCGAGTAGTG  1000
       |||||||||||| |||||||||| |||| ||||||||||||||||||||
seq2  -AAAAGTATCTTT-GTGCTGGTCA-GTGA-GGCCCTTCATCCGAGTAGTG  995

seq1  GCCTTATTCAGTAAGCTGTGTGCACATTTCTGCATAGATTGACACCATGC  1050
      | |||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  G-CTTA-TCAGTAAGCTGTGTGCACATTTCTGCATAGA-TGACACCATGC  1042

seq1  ACTAACAGGGGAAAGCCTGCTATAGAAGCCATGTTGATGAGTGTCTCCTT  1100
      ||| |||  |||||| |||||||||||| |||| ||||||| ||||||||
seq2  ACT-ACA--GGAAAGGCTGCTATAGAAG-CATG-TGATGAGGGTCTCCTT  1087

seq1  GGCGACTGTTTGGTAACAGAGTCTTTACTG-AGGAAATGTTTTCATC  1146
       ||||||| ||||||||||||||||||||| |||||||| |||||||
seq2  -GCGACTG-TTGGTAACAGAGTCTTTACTGAAGGAAATG-TTTCATC  1131