BAC Information

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BAC

Clone NameB6Ng01-167C13
Chromosome12 (Build37)
Map Location 92,462,457 - 92,619,232
singlet/doubletdoublet
Overlap gene4930534B04Rik
Upstream geneNrxn3, LOC100039498, LOC100039287, Dio2, LOC100039295, 4930544I03Rik, 5430427M07Rik
Downstream geneTshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167C13.bB6Ng01-167C13.g
ACCDH958730DH958731
length1,1801,171
definitionDH958730|Mus musculus domesticus DNA, BAC clone: B6Ng01-167C13, 5' end.DH958731|Mus musculus domesticus DNA, BAC clone: B6Ng01-167C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,462,457 - 92,463,641)(92,618,043 - 92,619,232)
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatgttaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataacttttaatcaatag
tatcttcaaatcttacttctcaatatgatcagaaaggaaaaagagctcca
aaataagagtatattttaaaatacaaatgattttcccctaaactgtatat
ttctcatatgtataacccaaagcatattgccaacaacgaaacaaatagta
agatattttcattttttgagaggatagactattagatggttattcatatc
ctaaacaagcatagacatggtcaaatacttttcacaaaaagaggcaatat
ctaaaaacataaagttttatttgcatatgtatcaccaaagtaacacagaa
tgcaaagtgatcagcaaagtgcaccacacccttcttagcaagtcaggagc
ttctgttctcaggtaagactcaaaaccataagcagccagttgtctgacct
gcaaccggagcagcttcgctagcgtctctcccgccatttgaactgcacca
cagaaaacacggctcggtccagtgcctagcacgggtaatactattaacac
acgaagggcactctgagaagatcccaaaacagatcagcacagggaactta
cccaatactaggacaaattattctctgtaagcaaagaaactacagctcta
catacttgcctagaatttatgacaaaatctcctcttaatcttacagggaa
ccacttaactggcattcttatagctatctc
gaattcttacctacacaaattgacacatttggaactcgtataaagatgct
tcaggatagattcactattagacctttcatcatgttagggggctcattag
actgtcttgaatatagtcatgctctttaaagtctgttttcctatgtaact
ctgtattgttaaatggtcatacaaatactggaggcaaggtttggaataca
gcccaggctgatctggaactcagaacccctgcttcagcctccccagtgct
aggattcaaggtgtgctccacttacctgggccactgccttatctgtttga
actcttacctttgtggcttagtgattagatatagttaatgtatccctcaa
ccaggggatttgtttcttataattcttaaatgaaattcgtatacatgtat
cttatacataagttgtacacacaaacacccataccccctcccacaccctc
cccgcacatgcacatacttttgttttcttgagacactgatcatagaagca
gagtttctgagtcaaagtgtgtgtatttacttgttttgccaagtcattct
ctagaaaagttgccctcatgtttatagacagtatgcttttacttacttaa
ccattgcgggcaggtgcaggggtgtgtgctacaggcatgtagaaggcaga
ggacaacttttggcagttggctctcttcttccatcatgggctcccaggac
tgaactcaagacaagtgcttttatctgctgagccaccttgctagcttttg
taactactacttgtacaccatagagtgtccttgttaaccttgagggtgag
agctttgctcatctgtcccaaacagaagaacaaggacaccattttattgt
tttaattttcagttcttcagagagatgaagtatatttatgcatttggcag
ggacacttctattctgtgaactgcctgtctgtgttcctgtgtgcttttac
tactggagtgttattatttttgtgtgcttttgaaaagctaattactcccc
ctgctcctctataatgcaaacattctgagtttttcttttgcttccggggc
ctgtttcgctattaaaaatgaccgaaagaacttaccagcctttcccgcca
ccaccttccatgatacaataaggcctacacataatatgcatacttgccaa
tgcagtgaatgagaagccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_92462457_92463641
seq2: B6Ng01-167C13.b_47_1226

seq1  GAATTCCTGATCTTTCCAGAACTTTTATCATGAATGGGTGTTGGATCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCTTTCCAGAACTTTTATCATGAATGGGTGTTGGATCTTG  50

seq1  TCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTT  100

seq1  GAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATGTTAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATGTTAAACC  150

seq1  ATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCT  200

seq1  TTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTAAGGATTTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTAAGGATTTTTGC  250

seq1  ATCGATGTTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATGTTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGAT  300

seq1  CTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTG  350

seq1  GGTAGAATACCTTCTACTTCTATCTTGTGAAAAAGTTTGTGCAGAACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAATACCTTCTACTTCTATCTTGTGAAAAAGTTTGTGCAGAACTGG  400

seq1  AGTTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTG  450

seq1  GTCCTGGGCTTTTTTTGGCTGGGAGACTATTAATAACTTTTAATCAATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGCTTTTTTTGGCTGGGAGACTATTAATAACTTTTAATCAATAG  500

seq1  TATCTTCAAATCTTACTTCTCAATATGATCAGAAAGGAAAAAGAGCTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCAAATCTTACTTCTCAATATGATCAGAAAGGAAAAAGAGCTCCA  550

seq1  AAATAAGAGTATATTTTAAAATACAAATGATTTTCCCCTAAACTGTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAGTATATTTTAAAATACAAATGATTTTCCCCTAAACTGTATAT  600

seq1  TTCTCATATGTATAACCCAAAGCATATTGCCAACAACGAAACAAATAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATATGTATAACCCAAAGCATATTGCCAACAACGAAACAAATAGTA  650

seq1  AGATATTTTCATTTTTTGAGAGGATAGACTATTAGATGGTTATTCATATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTTCATTTTTTGAGAGGATAGACTATTAGATGGTTATTCATATC  700

seq1  CTAAACAAGCATAGACATGGTCAAATACTTTTCACAAAAAGAGGCAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAAGCATAGACATGGTCAAATACTTTTCACAAAAAGAGGCAATAT  750

seq1  CTAAAAACATAAAGTTTTATTTGCATATGTATCACCAAAGTAACACAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAACATAAAGTTTTATTTGCATATGTATCACCAAAGTAACACAGAA  800

seq1  TGCAAAGTGATCAGCAAAGTGCACCACACCCTTCTTAGCAAGTCAGGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGTGATCAGCAAAGTGCACCACACCCTTCTTAGCAAGTCAGGAGC  850

seq1  TTCTGTTCTCAGGTAAGACTCAAAACCATAAGCAGCCAGTTGTCTGACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCTCAGGTAAGACTCAAAACCATAAGCAGCCAGTTGTCTGACCT  900

seq1  GCAACCGGAGCAGCTTCGCTAGCGTCTCTCCCGCCATTTGAACTGCACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCGGAGCAGCTTCGCTAGCGTCTCTCCCGCCATTTGAACTGCACCA  950

seq1  CAGAAAACACGGCTCGGTCCAGTGCCTAGCACGGGTAATACTATTAACAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACACGGCTCGGTCCAGTGCCTAGCACGGGTAATACTATTAACAC  1000

seq1  ACGAAGGGCCACTCTGAGAAAGATCCCAAAACAGATCAGCACAGGGAACT  1050
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  ACGAAGGG-CACTCTGAG-AAGATCCCAAAACAGATCAGCACAGGGAACT  1048

seq1  TACCCAATACTAGGACATATTATTCTCTGTAAGCAAAGGAAACTACAGCC  1100
      ||||||||||||||||| ||||||||||||||||||| |||||||||| |
seq2  TACCCAATACTAGGACAAATTATTCTCTGTAAGCAAA-GAAACTACAG-C  1096

seq1  TCTACATGGCCTG-CTAGAATTTATGACAAAATCTCCTCCTTAATC-TAC  1148
      |||||||  | || |||||||||||||||||||||||| ||||||| |||
seq2  TCTACAT-ACTTGCCTAGAATTTATGACAAAATCTCCT-CTTAATCTTAC  1144

seq1  A-GGAACCACTTACCTGGCATTCTTTAATAGCTATCTC  1185
      | ||||||||||| |||||||||||  |||||||||||
seq2  AGGGAACCACTTAACTGGCATTCTT--ATAGCTATCTC  1180

seq1: chr12_92618043_92619232
seq2: B6Ng01-167C13.g_67_1237 (reverse)

seq1  GGTGGCTTCTCCAATC-CTCCAGTCATTTAGC-AGTATGCAGATTTATGT  48
      |||||||||| || || || ||     || || |||||||| | ||||||
seq2  GGTGGCTTCT-CATTCACTGCA-----TTGGCAAGTATGCATA-TTATGT  43

seq1  TAAGGGCTATTATATTAATCATAGGAAGATGAGTAGCTGAGAAAGGCTTG  98
        ||| |  |||| |  ||||| ||||| || || || | ||||||| ||
seq2  GTAGGCC--TTAT-TGTATCAT-GGAAGGTG-GTGGC-GGGAAAGGC-TG  86

seq1  CTAAGTCTCTTCAGGTCATTTCTAAATAGCAGAACAAGACACCGGAAGCA  148
       ||||| ||||  |||||||| | |||||| |||  || | |||||||||
seq2  GTAAGT-TCTTTCGGTCATTT-TTAATAGC-GAAACAGGCCCCGGAAGCA  133

seq1  AAGGAAAAACTCAGAATGTGTGCATTATAGAGGAGCCAGGGGGAGTAATT  198
      || |||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  AAAGAAAAACTCAGAATGTTTGCATTATAGAGGAG-CAGGGGGAGTAATT  182

seq1  AGCTCTTCAAAAAGCACACAAAAATAATAACACTCCAGTAGTAAAAGGCA  248
      |||| ||| ||||||||||||||||||||||||||||||||||||| |||
seq2  AGCTTTTC-AAAAGCACACAAAAATAATAACACTCCAGTAGTAAAA-GCA  230

seq1  CAACAGGAACACAGACAGGCAGTTCACAGAATAGAAGTGTCCCTGCCAAA  298
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-ACAGGAACACAGACAGGCAGTTCACAGAATAGAAGTGTCCCTGCCAAA  279

seq1  TGCATAAATATACTTCATCTCTCTGAAGAACTGAAAATTAAAACAATAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAATATACTTCATCTCTCTGAAGAACTGAAAATTAAAACAATAAA  329

seq1  ATGGTGTCCTTGTTCTTCTGTTTGGGACAGATGAGCAAAGCTCTCACCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTCCTTGTTCTTCTGTTTGGGACAGATGAGCAAAGCTCTCACCCT  379

seq1  CAAGGTTAACAAGGACACTCTATGGTGTACAAGTAGTAGTTACAAAAGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTAACAAGGACACTCTATGGTGTACAAGTAGTAGTTACAAAAGCT  429

seq1  AGCAAGGTGGCTCAGCAGATAAAAGCACTTGTCTTGAGTTCAGTCCTGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGTGGCTCAGCAGATAAAAGCACTTGTCTTGAGTTCAGTCCTGGG  479

seq1  AGCCCATGATGGAAGAAGAGAGCCAACTGCCAAAAGTTGTCCTCTGCCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATGATGGAAGAAGAGAGCCAACTGCCAAAAGTTGTCCTCTGCCTT  529

seq1  CTACATGCCTGTAGCACACACCCCTGCACCTGCCCGCAATGGTTAAGTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGCCTGTAGCACACACCCCTGCACCTGCCCGCAATGGTTAAGTAA  579

seq1  GTAAAAGCATACTGTCTATAAACATGAGGGCAACTTTTCTAGAGAATGAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGCATACTGTCTATAAACATGAGGGCAACTTTTCTAGAGAATGAC  629

seq1  TTGGCAAAACAAGTAAATACACACACTTTGACTCAGAAACTCTGCTTCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAAACAAGTAAATACACACACTTTGACTCAGAAACTCTGCTTCTA  679

seq1  TGATCAGTGTCTCAAGAAAACAAAAGTATGTGCATGTGCGGGGAGGGTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGTGTCTCAAGAAAACAAAAGTATGTGCATGTGCGGGGAGGGTGT  729

seq1  GGGAGGGGGTATGGGTGTTTGTGTGTACAACTTATGTATAAGATACATGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGGTATGGGTGTTTGTGTGTACAACTTATGTATAAGATACATGT  779

seq1  ATACGAATTTCATTTAAGAATTATAAGAAACAAATCCCCTGGTTGAGGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGAATTTCATTTAAGAATTATAAGAAACAAATCCCCTGGTTGAGGGA  829

seq1  TACATTAACTATATCTAATCACTAAGCCACAAAGGTAAGAGTTCAAACAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAACTATATCTAATCACTAAGCCACAAAGGTAAGAGTTCAAACAG  879

seq1  ATAAGGCAGTGGCCCAGGTAAGTGGAGCACACCTTGAATCCTAGCACTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCAGTGGCCCAGGTAAGTGGAGCACACCTTGAATCCTAGCACTGG  929

seq1  GGAGGCTGAAGCAGGGGTTCTGAGTTCCAGATCAGCCTGGGCTGTATTCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTGAAGCAGGGGTTCTGAGTTCCAGATCAGCCTGGGCTGTATTCC  979

seq1  AAACCTTGCCTCCAGTATTTGTATGACCATTTAACAATACAGAGTTACAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTGCCTCCAGTATTTGTATGACCATTTAACAATACAGAGTTACAT  1029

seq1  AGGAAAACAGACTTTAAAGAGCATGACTATATTCAAGACAGTCTAATGAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACAGACTTTAAAGAGCATGACTATATTCAAGACAGTCTAATGAG  1079

seq1  CCCCCTAACATGATGAAAGGTCTAATAGTGAATCTATCCTGAAGCATCTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTAACATGATGAAAGGTCTAATAGTGAATCTATCCTGAAGCATCTT  1129

seq1  TATACGAGTTCCAAATGTGTCAATTTGTGTAGGTAAGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGAGTTCCAAATGTGTCAATTTGTGTAGGTAAGAATTC  1171