BAC Information

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BAC

Clone NameB6Ng01-167N17
Chromosome12 (Build37)
Map Location 88,727,978 - 88,848,643
singlet/doubletdoublet
Overlap geneSptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883
Upstream geneEsrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3
Downstream geneEG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167N17.bB6Ng01-167N17.g
ACCDH959245DH959246
length1,1171,062
definitionDH959245|Mus musculus domesticus DNA, BAC clone: B6Ng01-167N17, 5' end.DH959246|Mus musculus domesticus DNA, BAC clone: B6Ng01-167N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,727,978 - 88,729,110)(88,847,573 - 88,848,643)
sequence
gaattctgtaagatagtttagaagttcatggatatggttgatgattcaac
ttcagttaattaatacaaggactcatgacaacttaccactggattaagca
acgccctccacgatagctctattgcgccgtgaaggggccacctaaaatcc
tatctggatggtgggatgggggtctcaccaatcgcacaacgggacaattt
tcaagacaagacccccgaggaggttccctgccaaggttttccccataaag
gaagtccagaacgtgataggaagaggctgtccggttgtgcttccacaact
gcactgcctaactttctcagagcgtcagcttccttttggggctgcaagac
tctacaggaagcatgtactcgaggggacccgggcaggaacccgagaaagt
atcgccggacttcgagggaaagatttcctctgcttcccactaggagcggc
ctgcacttttttttttttttttttgcgtgatccacatggttaagaaccag
agacttgcagaggaagcccagcctccagggcccttcagaacagcaaatgc
tgaggagccgggcagacctcaggagtcccgcgtggctgaggagccccggg
aggctggagagccaggcagaactaggggacaccgcacacctaagaaacca
ggtaaaccttgggacccccgcagggcagagaaccacagctcatcgctgcg
gagccgggtagtactgggaaggctcgaataactggagaagcgggcagaac
cgaggagcccctcacggtgagggagccccacatagttgtagagtcccgcg
ctgcccttgagtctccctcccgctcaagggggagagcccagccagcgccg
gctccccgtcgctcagcacacctgagccgcgcccagccgccagccggcca
ctgaccgcccgcgcggctgcccgtctccccggcccggccggccagcccgg
gcatcggctcgcggggtcccggtcacgcccgatctcgcccagctctcgat
cccatcgtactggcgcaagcgcgacggtggcggtgctgctcctcagtacc
cgttcctcacttccgtctgaaccagcgttcgcccgcatcgggagcgagca
gcagctcaggtccgggc
gaattcacatggcttttgctgtaactgagaggtgtgaactgtttttataa
aggagatttcttctcaggactgaggatgccaggtttttttttgcgtgggg
gcgggggtgagcagggtttgttagcttgattattatggtactccaacctc
ccaggtcagaaattctagactactcacattgattcgcttcctttcagata
tccaaacacatttctttagccgtctgttaggtccaggatagcttaacgac
attatggggcaggcaaggcatctgacatgactaggtgcctagaagttgtc
cagatccaagaggttgcaaccttcctctgaggtccctgcttctgctcttc
tggccctaacatatcagttcaacaggagtagaaactggcaagtggatgtg
ataccacattctagggatctgggtggtgaccaacttgggtctgagctttg
ggtactttctcctgggaccttctgtcctgggtgtgtgttgacacacacct
cctggctgcagttggtgttccatgctgctgttctcccagaagggcactgc
tcacttctgggtgctgctggccaccacactggttttgttactttctttta
tctcatccttcttcttccttccttagacctggaacatggttgacagtttc
ttcatcacctcttctacagggagttcgtctagaaatttaaaggggaaccc
tgtctttgattctccttacaggtgtctcattgctggaatagagatgcaaa
aaaaatcttacatgaaattctaaataagcaatcaccagcttcgtgtcctc
ctgctgcagaaacacagctgggccttggaagatttggaatgtttcccttc
ctggcgttggttgcttagctgcattttctaatgagcttctctggtcatac
ccctcctggtttacagctctctaatggattcctctcatgctctattaaat
ctaaaacttcgaactctatgtggtgtagcctggcctggcacctgcacttc
ttgcaaacaagtgtctttgctcagttactcagtttcctctctggtttctc
acatgctagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_88727978_88729110
seq2: B6Ng01-167N17.b_49_1165

seq1  GAATTCTGTAAGATAGTTTAGAAGTTCATGGATATGGTTGATGATTCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAAGATAGTTTAGAAGTTCATGGATATGGTTGATGATTCAAC  50

seq1  TTCAGTTAATTAATACAAGGACTCATGACAACTTACCACTGGATTAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTAATTAATACAAGGACTCATGACAACTTACCACTGGATTAAGCA  100

seq1  ACGCCCTCCACGATAGCTCTATTGCGCCGTGAAGGGGCCACCTAAAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCTCCACGATAGCTCTATTGCGCCGTGAAGGGGCCACCTAAAATCC  150

seq1  TATCTGGATGGTGGGATGGGGGTCTCACCAATCGCACAACGGGACAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGATGGTGGGATGGGGGTCTCACCAATCGCACAACGGGACAATTT  200

seq1  TCAAGACAAGACCCCCGAGGAGGTTCCCTGCCAAGGTTTTCCCCATAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACAAGACCCCCGAGGAGGTTCCCTGCCAAGGTTTTCCCCATAAAG  250

seq1  GAAGTCCAGAACGTGATAGGAAGAGGCTGTCCGGTTGTGCTTCCACAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCCAGAACGTGATAGGAAGAGGCTGTCCGGTTGTGCTTCCACAACT  300

seq1  GCACTGCCTAACTTTCTCAGAGCGTCAGCTTCCTTTTGGGGCTGCAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCCTAACTTTCTCAGAGCGTCAGCTTCCTTTTGGGGCTGCAAGAC  350

seq1  TCTACAGGAAGCATGTACTCGAGGGGACCCGGGCAGGAACCCGAGAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGGAAGCATGTACTCGAGGGGACCCGGGCAGGAACCCGAGAAAGT  400

seq1  ATCGCCGGACTTCGAGGGAAAGATTTCCTCTGCTTCCCACTAGGAGCGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCCGGACTTCGAGGGAAAGATTTCCTCTGCTTCCCACTAGGAGCGGC  450

seq1  CTGCACTTTTTTTTTTTTTTTTTTGCGTGATCCACATGGTTAAGAACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTTTTTTTTTTTTTTTTTTGCGTGATCCACATGGTTAAGAACCAG  500

seq1  AGACTTGCAGAGGAAGCCCAGCCTCCAGGGCCCTTCAGAACAGCAAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGCAGAGGAAGCCCAGCCTCCAGGGCCCTTCAGAACAGCAAATGC  550

seq1  TGAGGAGCCGGGCAGACCTCAGGAGTCCCGCGTGGCTGAGGAGCCCCGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGCCGGGCAGACCTCAGGAGTCCCGCGTGGCTGAGGAGCCCCGGG  600

seq1  AGGCTGGAGAGCCAGGCAGAACTAGGGGACACCGCACACCTAAGAAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGAGAGCCAGGCAGAACTAGGGGACACCGCACACCTAAGAAACCA  650

seq1  GGTAAACCTTGGGACCCCCGCAGGGCAGAGAACCACAGCTCATCGCTGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACCTTGGGACCCCCGCAGGGCAGAGAACCACAGCTCATCGCTGCG  700

seq1  GAGCCGGGTAGTACTGGGAAGGCTCGAATAACTGGAGAAGCGGGCAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGGGTAGTACTGGGAAGGCTCGAATAACTGGAGAAGCGGGCAGAAC  750

seq1  CGAGGAGCCCCTCACGGTGAGGGAGCCCCACATAGTTGTAGAGTCCCGCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGAGCCCCTCACGGTGAGGGAGCCCCACATAGTTGTAGAGTCCCGCG  800

seq1  CTGCCCTTGAGTCTCCCTCCCGCTCAGGGGGGAG-GCCCAGCCAGCGCCG  849
      |||||||||||||||||||||||||| ||||||| |||||||||||||||
seq2  CTGCCCTTGAGTCTCCCTCCCGCTCAAGGGGGAGAGCCCAGCCAGCGCCG  850

seq1  GCTCCCCGTCGCTCAGCACACCTGAGCCGCGCCCAGCCGCCAGCCGGCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCGTCGCTCAGCACACCTGAGCCGCGCCCAGCCGCCAGCCGGCCA  900

seq1  CTGACCGGCCCGCGCGGCTGCCCGTCCTCCCCGGCCCGGCCCGGCCCAGC  949
      |||||| |||||||||||||||||| |||||||||||||||  | |||||
seq2  CTGACC-GCCCGCGCGGCTGCCCGT-CTCCCCGGCCCGGCC--GGCCAGC  946

seq1  CCGGGCATCGGCTCGCGGGGGTCCCGGCCCACCGCCCCGATCTCGCCCAG  999
      |||||||||||||||| ||||||||||  |||   |||||||||||||||
seq2  CCGGGCATCGGCTCGC-GGGGTCCCGG-TCAC--GCCCGATCTCGCCCAG  992

seq1  CCTCTCGATCCCATCGTACCTGGCCGGCAGCCGCGACGGTGGCGGTGCTG  1049
       ||||||||||||||||| |||||  |||  |||||||||||||||||||
seq2  -CTCTCGATCCCATCGTA-CTGGC--GCAAGCGCGACGGTGGCGGTGCTG  1038

seq1  CTCCTCAAGTACCCGTTCCTCACTTCCCCGTTCTTGACGCAGCCGTTCGC  1099
      |||||| ||||||||||||||||||  ||||   |||  ||| |||||||
seq2  CTCCTC-AGTACCCGTTCCTCACTT--CCGT--CTGAACCAG-CGTTCGC  1082

seq1  CCGCATCGGGCGGCGGCAGCAG--CAGCCTCCGGGC  1133
      |||||||||| |   |||||||  |||  |||||||
seq2  CCGCATCGGGAGCGAGCAGCAGCTCAG-GTCCGGGC  1117

seq1: chr12_88847573_88848643
seq2: B6Ng01-167N17.g_67_1128 (reverse)

seq1  ATGCTTAGCATGGTGAAGAAACAGAGAGGAACCTGGAGTAACTGAGGCAA  50
      |||| |||||| ||||  || |||||||||| || |||||||||| ||||
seq2  ATGC-TAGCAT-GTGAGAAACCAGAGAGGAAACT-GAGTAACTGA-GCAA  46

seq1  AGACACTTGTGTGCAAGAAGGTGCAGGTGCCAAGCCAGGCTACACCACAT  100
      |||||||||| |||||||| |||||||||||| |||||||||||||||||
seq2  AGACACTTGTTTGCAAGAA-GTGCAGGTGCCAGGCCAGGCTACACCACAT  95

seq1  AGAGTTCGAAGTGTTTAGATTTTAATAAGAGCATGAGAGGAATCCATTAG  150
      |||||||||||| |||||| |||||| |||||||||||||||||||||||
seq2  AGAGTTCGAAGT-TTTAGA-TTTAAT-AGAGCATGAGAGGAATCCATTAG  142

seq1  AGAGCTGTAAACCAGGAGGGGTATGACCAGAGAAGCTCATTAGAAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGTAAACCAGGAGGGGTATGACCAGAGAAGCTCATTAGAAAATGC  192

seq1  AGCTAAGCAACCAACGCCAGGAAGGGAACATTTCCAAATCTTTCCAAGGC  250
      ||||||||||||||||||||||||||||   ||||||||| |||||||||
seq2  AGCTAAGCAACCAACGCCAGGAAGGGAAACATTCCAAATC-TTCCAAGGC  241

seq1  CCAGCTGTGTTTCTGCAGCAGGAGGACACGAAGCTGGTGATTGCTTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTGTTTCTGCAGCAGGAGGACACGAAGCTGGTGATTGCTTATTT  291

seq1  AGAATTTCATGTAAGATTTTTTTTGCATCTCTATTCCAGCAATGAGACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTCATGTAAGATTTTTTTTGCATCTCTATTCCAGCAATGAGACAC  341

seq1  CTGTAAGGAGAATCAAAGACAGGGTTCCCCTTTAAATTTCTAGACGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGGAGAATCAAAGACAGGGTTCCCCTTTAAATTTCTAGACGAACT  391

seq1  CCCTGTAGAAGAGGTGATGAAGAAACTGTCAACCATGTTCCAGGTCTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTAGAAGAGGTGATGAAGAAACTGTCAACCATGTTCCAGGTCTAAG  441

seq1  GAAGGAAGAAGAAGGATGAGATAAAAGAAAGTAACAAAACCAGTGTGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGAAGAAGGATGAGATAAAAGAAAGTAACAAAACCAGTGTGGTG  491

seq1  GCCAGCAGCACCCAGAAGTGAGCAGTGCCCTTCTGGGAGAACAGCAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAGCACCCAGAAGTGAGCAGTGCCCTTCTGGGAGAACAGCAGCAT  541

seq1  GGAACACCAACTGCAGCCAGGAGGTGTGTGTCAACACACACCCAGGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACCAACTGCAGCCAGGAGGTGTGTGTCAACACACACCCAGGACAG  591

seq1  AAGGTCCCAGGAGAAAGTACCCAAAGCTCAGACCCAAGTTGGTCACCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCCCAGGAGAAAGTACCCAAAGCTCAGACCCAAGTTGGTCACCACC  641

seq1  CAGATCCCTAGAATGTGGTATCACATCCACTTGCCAGTTTCTACTCCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCTAGAATGTGGTATCACATCCACTTGCCAGTTTCTACTCCTGT  691

seq1  TGAACTGATATGTTAGGGCCAGAAGAGCAGAAGCAGGGACCTCAGAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGATATGTTAGGGCCAGAAGAGCAGAAGCAGGGACCTCAGAGGAA  741

seq1  GGTTGCAACCTCTTGGATCTGGACAACTTCTAGGCACCTAGTCATGTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAACCTCTTGGATCTGGACAACTTCTAGGCACCTAGTCATGTCAG  791

seq1  ATGCCTTGCCTGCCCCATAATGTCGTTAAGCTATCCTGGACCTAACAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTGCCTGCCCCATAATGTCGTTAAGCTATCCTGGACCTAACAGAC  841

seq1  GGCTAAAGAAATGTGTTTGGATATCTGAAAGGAAGCGAATCAATGTGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAGAAATGTGTTTGGATATCTGAAAGGAAGCGAATCAATGTGAGT  891

seq1  AGTCTAGAATTTCTGACCTGGGAGGTTGGAGTACCATAATAATCAAGCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGAATTTCTGACCTGGGAGGTTGGAGTACCATAATAATCAAGCTA  941

seq1  ACAAACCCTGCTCACCCCCGCCCCCACGCAAAAAAAAACCTGGCATCCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCCTGCTCACCCCCGCCCCCACGCAAAAAAAAACCTGGCATCCTC  991

seq1  AGTCCTGAGAAGAAATCTCCTTTATAAAAACAGTTCACACCTCTCAGTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGAGAAGAAATCTCCTTTATAAAAACAGTTCACACCTCTCAGTTA  1041

seq1  CAGCAAAAGCCATGTGAATTC  1071
      |||||||||||||||||||||
seq2  CAGCAAAAGCCATGTGAATTC  1062