BAC Information

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BAC

Clone NameB6Ng01-168B01
Chromosome12 (Build37)
Map Location 36,779,094 - 36,780,203
singlet/doubletsinglet
Overlap genenone
Upstream geneSnx13, Ahr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13
Downstream geneEG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168B01.bB6Ng01-168B01.g
ACCDH959401DH959402
length1,2161,125
definitionDH959401|Mus musculus domesticus DNA, BAC clone: B6Ng01-168B01, 5' end.DH959402|Mus musculus domesticus DNA, BAC clone: B6Ng01-168B01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaagtccaggaagtggtccaaataagagatcaaaagccccacaa
actctagggaaactgatttcaccaagatccagcctgctgggggaggataa
aagtacttggtagtttttaaagattctttttctggataggtagaaacatc
ctctacccaggctgaagctgcttaaataggagctaagatgatcctctaga
aattgatcccctaaaagaaagaaaggaaaggaaaagaaaagaaaagaaaa
gaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaa
gaaactgttcccctaacatagcctctcccttaacaattggggttagcagc
ctgactttcatagtcaaaacctctcaattaatatctaaagccttagacat
acattgaaaacttcattgtgcatgtagacctcagggttctggccaggtaa
aaagaataaacaggacattaaaagaaactttaacaaaactctcattagag
tctgccagagggtagatagatctccttcctttgctttagcccactggtcc
ccataccagtggatttatgttctccttgagattatgtttggaagaccttc
cccaggctcagacaccagcagttggcagaactctctaaccgttcctttct
caagttaccataggtactccagtcttccataaaggctgtccattggtgta
ttcaagagagccagctgacctcctaatccatcaccagttttcctttgtcc
cagcccagtgacattgtctgtgtcaggcagatagccaacagggcactgaa
atcaactagaaagggactctacactgtgattctctccaatcctaaaggct
gtgaagatatctggcattacagatatcattacaggttaagaaagaagaag
ccatagatgctgctgccaaataaaccatctccagacttaaaattaaggtt
tcaatgagccctggcccttacactccctgccctctactttctctgagact
gtgtttaatataaatacagggtatggtccgacctcaggctttcagttgga
ctaggaatgaagaagtcagctcagagagtattacctagtatgactgtaga
acagaaatcatatcaccttgtcttactatgacccctacttagattggtgt
tgagaaacggaaagcggaattatattttgagatacgaaatacgagcgttt
taaaaattctatatac
gaattcttgattctcagtggggctttccccagactttgggtgaagggtcc
ctttctcttcccaggtcgtcataattgtctgtattatcatgactcgctat
gtacattttgcccagtagaatacagaagaagagatgcagagtctgttgat
cagacactgatacactgattgaggacttttttttttttttggcagtttcc
ccttgtgccttagcattatgtaggaaacccaacatcctcaatggagagat
cgtacagagagggttagccaaagccacaccattttgaatagtcctgacag
tttcttgaaactatagtgatagcattctatacttgctttcctcaattcct
tgtcacatacccagagagccccccgcccccaccataagaaatgtctatca
tgggatattctttaccactgttctctctttggggatcactcctagccaca
gccaatccttgccttcagaagaaagttttcaatgtcctttctctcccctc
cattctgtgttttaattaccccaacttgtaagtccacagcagactctagc
tcttccagagacccacccatctgcagggctgttccccacataagggactc
aagtgtttgttgctctgtcccttgtttgtctgcctttctattatcttact
gagaggtcttgagaacatatggaatgtatattgtgacagttcccactagg
gaaggtttgaccctccacaccagcctggatgccacttgaattgtcccctc
ctagtactctgataagtagtagaagaaccacatagccaagtgttactgaa
aatcaagagctttcatagaagaattatgggttttaagcttgttatattta
gaggtcagtgtaatatagagataaataatgagacttctccaatttataga
gtattacatatagagattgtggcttcaaatggtaaggcagaaaagaagaa
tgtgaattgtttagaataaaaggggatgtgaactggggatgtctcctcag
tgggtacgagtacatatgcaaagtactaggtttaatccctaataccaata
atataatatattggatggatagcaatacatattaatgttagcacacaaat
tgtgggggtcaatatctggtgagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_36779094_36780203
seq2: B6Ng01-168B01.g_68_1191 (reverse)

seq1  TCTCA-CAGATAT---GCACCACCATTTGTG-GCTAACAATTATTAGTAT  45
      ||||| |||||||    | |||| ||||||| ||||||| | ||  ||||
seq2  TCTCACCAGATATTGACCCCCACAATTTGTGTGCTAACATTAATATGTAT  50

seq1  TGCTAT-CAT-CATTATTATTATTATTATT-GTATTAGGGATTAAACCTA  92
      |||||| ||| || || ||||| ||||||| |||||||||||||||||||
seq2  TGCTATCCATCCAATA-TATTA-TATTATTGGTATTAGGGATTAAACCTA  98

seq1  GTACTTTGCATATGTACTC-TA-CCACTGA-GAGACATCCCCAG-TCACA  138
      ||||||||||||||||||| || ||||||| ||||||||||||| |||||
seq2  GTACTTTGCATATGTACTCGTACCCACTGAGGAGACATCCCCAGTTCACA  148

seq1  TCCCCTTTAATTCTTAAC-ATTCACA-TCTTC-TTTCTGCCTTACAATTT  185
      |||||||| ||||| ||| ||||||| ||||| |||||||||||| ||||
seq2  TCCCCTTTTATTCTAAACAATTCACATTCTTCTTTTCTGCCTTACCATTT  198

seq1  GAAGCCACAATCTCTATATGTAATACTCTATAAATTTGGGGAAGTCTCAT  235
      |||||||||||||||||||||||||||||||||| |||| ||||||||||
seq2  GAAGCCACAATCTCTATATGTAATACTCTATAAA-TTGGAGAAGTCTCAT  247

seq1  TATTTATCTCTATATTACACTGACCTCTAAATATAAC-AGCTTAAAA-CC  283
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  TATTTATCTCTATATTACACTGACCTCTAAATATAACAAGCTTAAAACCC  297

seq1  ATAATTCTTCTATGAAAGCTCTTGATTTTCAGTAACACTTGGCTATGTGG  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCTTCTATGAAAGCTCTTGATTTTCAGTAACACTTGGCTATGTGG  347

seq1  TTCTTCTACTACCTATCAGAGTACTAGGAGGGGACAATTCAAGTGGCATC  383
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTACTACTTATCAGAGTACTAGGAGGGGACAATTCAAGTGGCATC  397

seq1  CAGGCTGGTGTGGAGGGTCAAACCTTCCCTAGTGGGAACTGTCACAATAT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGTGTGGAGGGTCAAACCTTCCCTAGTGGGAACTGTCACAATAT  447

seq1  ACATTCCATATGTTCTCAAGACCTCTCAGTAAGATAATAGAAAGGCAGAC  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCATATGTTCTCAAGACCTCTCAGTAAGATAATAGAAAGGCAGAC  497

seq1  AAACAAGGGACAGAGCAACAAACACTTGAGTCCCTTATGTGGGGAACAGC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGGGACAGAGCAACAAACACTTGAGTCCCTTATGTGGGGAACAGC  547

seq1  CCTGCAGATGGGTGGGTCTCTGGAAGAGCTAGAGTCTGCTGTGGACTTAC  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGATGGGTGGGTCTCTGGAAGAGCTAGAGTCTGCTGTGGACTTAC  597

seq1  AAGTTGGGGTAATTAAAACACAGAATGGAGGGGAGAGAAAGGACATTGAA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGGGTAATTAAAACACAGAATGGAGGGGAGAGAAAGGACATTGAA  647

seq1  AACTTTCTTCTGAAGGCAAGGATTGGCTGTGGCTAGGAGTGATCCCCAAA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCTTCTGAAGGCAAGGATTGGCTGTGGCTAGGAGTGATCCCCAAA  697

seq1  GAGAGAACAGTGGTAAAGAATATCCCATGATAGACATTTCTTATGGTGGG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACAGTGGTAAAGAATATCCCATGATAGACATTTCTTATGGTGGG  747

seq1  GGCGGGGGGCTCTCTGGGTATGTGACAAGGAATTGAGGAAAGCAAGTATA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGGGGCTCTCTGGGTATGTGACAAGGAATTGAGGAAAGCAAGTATA  797

seq1  GAATGCTATCACTATAGTTTCAAGAAACTGTCAGGACTATTCAAAATGGT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTATCACTATAGTTTCAAGAAACTGTCAGGACTATTCAAAATGGT  847

seq1  GTGGCTTTGGCTAACCCTCTCTGTACGATCTCTCCATTGAGGATGTTGGG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTTGGCTAACCCTCTCTGTACGATCTCTCCATTGAGGATGTTGGG  897

seq1  TTTCCTACATAATGCTAAGGCACAAGGGGAAACTGCCAAAAAAAAAAAAA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTACATAATGCTAAGGCACAAGGGGAAACTGCCAAAAAAAAAAAAA  947

seq1  AGTCCTCAATCAGTGTATCAGTGTCTGATCAACAGACTCTGCATCTCTTC  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCAATCAGTGTATCAGTGTCTGATCAACAGACTCTGCATCTCTTC  997

seq1  TTCTGTATTCTACTGGGCAAAATGTACATAGCGAGTCATGATAATACAGA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATTCTACTGGGCAAAATGTACATAGCGAGTCATGATAATACAGA  1047

seq1  CAATTATGACGACCTGGGAAGAGAAAGGGACCCTTCACCCAAAGTCTGGG  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATGACGACCTGGGAAGAGAAAGGGACCCTTCACCCAAAGTCTGGG  1097

seq1  GAAAGCCCCACTGAGAATCAAGAATTC  1110
      |||||||||||||||||||||||||||
seq2  GAAAGCCCCACTGAGAATCAAGAATTC  1124