BAC Information

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BAC

Clone NameB6Ng01-168E12
Chromosome12 (Build37)
Map Location 91,919,280 - 92,057,675
singlet/doubletdoublet
Overlap geneDio2
Upstream geneNrxn3, LOC100039498, LOC100039287
Downstream geneLOC100039295, 4930544I03Rik, 4930534B04Rik, 5430427M07Rik, Tshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168E12.bB6Ng01-168E12.g
ACCDH959559DH959560
length1,1921,124
definitionDH959559|Mus musculus domesticus DNA, BAC clone: B6Ng01-168E12, 5' end.DH959560|Mus musculus domesticus DNA, BAC clone: B6Ng01-168E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,919,280 - 91,920,506)(92,056,549 - 92,057,675)
sequence
gaattctactcctgtaagttacccaaagaaactcatgggttcatctatac
acacttagaaggaacctttactatgggttggcagtggttccctattttag
acaagtaaatagttgtccatgtctccccacaaataatgtcaaacattatc
agacaaagcatactaatatttttctatcaactttctaattgtatatatct
tagtaacatatatagcctaaatattgtgtcagtgaaaagcttttacaatt
taaactattttgacttttttatttcaattgctccctttagtatggtttct
agctatgtaaaagtgttagtttttttattgatagtggtatctcccatcgt
gtattttcacgtctaaccttcattttaaaaaattttcttagtgtaccttc
cattgtttttaaaattcttcatgtcttttattattttcccctaaaatatc
tactaaataaagaataattagctgaaatttccttctaattactagaatgt
gtacattgctctaaagtacatttctatttgtcacttattataaaataaag
tgaaataaaattcttttatttttatagtgtctggcccaaagtctcccatt
ctggagagtttctgtgcttcattcctctttgaacatcaacagttctaact
atataatttaaaataaaaatggaaatgcttttgctacaaaatttacatgc
catttaacttttctaagtcttccaattatgtacaaaatggacttattgtt
attattccccagagatcacaatggttgcttgactcaatggaccacactgt
cattaatgaagaaacacaagtcaccagtcatatcaagcactactgacaca
ttttcagagaacagtacctcacatatttgcttcaaagggcacacgcttat
cttaaattgatgtagtctgcctattgaaagcacctgcaagttcagggaat
gccttacactcttgcccagatttcttatgagtcattttctctgagttgtt
gttcctttagtttgaaatgtcacttctcgttgatacattgcatctagcac
acagtgcatgattagagcagctttaaactaaattaagcactggactctga
tcataatgttgtgccacacatgaaacaacacactacacacaccacacacg
catgcatatgccacacatatcttatacttccaaggttgaaga
gaattcacgaagattggtagctctgtgtttcattttctcccaatctaatc
tttctcttatacttgagagagtgatgctgttggtagccgcatatcagaaa
ttttggctcaaaccacttataaactggtgactctgagatagtctcatacc
ttcctaaatctcactggcctccctgtgaagtacaggtgataattatatct
catggagtcacatgagtattgaatataacagtgcttatatatggattaga
gagagagaaagagagagagagagagggagagagagagagagctcattggt
taaggtcagaggacttgagtttagcactcatatcacataattctcaattg
cctgtaactccaacttgaggaatatttgacacctctgggctttgaagcat
ctgcacttatgtgcacataaccatctcccatacatataactgcaggaaat
aaaaaaggaatttgaaaaatgtgcacaaagttcatgacctattgcatgtg
ttaaatattcacttgatgtgattattaccatttccttaaagttattttag
tgtaatttatatattgtggctcatatttccttgacaatataacatgttag
agtgattgacgctcagtcataccatcatgcaaccacattcttattttcta
gttattttcctctattttctccttctgaacagtgtttaatattaagaggt
atattaagaagaattttagatgctctcatctctggaaacattgtggtgac
cccagtctcaatgcccatatataagttaaataagatttcatttttagctt
ttttgttggttctttaggaatttcacatcaggcaccccaatcccactcat
ctctcccttccctcatacgtctcttccacccttgcatctccccgcaaaag
aaagaaattctcattgtggaatctttagtgggtcacagtgtatatcccac
agtacacccttttgcccacacttctttgcttgcactggtcattgcaatga
ctctgacctggtagatggctctctggccttctgtttatgctaccagtacc
gacctaacttgggactccctctcgacattctggtcctttctgtggtcatg
gagttcctgtatgtggatctgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_91919280_91920506
seq2: B6Ng01-168E12.b_46_1237

seq1  GAATTCTACTCCTGTAAGTTACCCAAAGAAACTCATGGGTTCATCTATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTCCTGTAAGTTACCCAAAGAAACTCATGGGTTCATCTATAC  50

seq1  ACACTTAGAAGGAACCTTTACTATGGGTTGGCAGTGGTTCCCTATTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAGAAGGAACCTTTACTATGGGTTGGCAGTGGTTCCCTATTTTAG  100

seq1  ACAAGTAAATAGTTGTCCATGTCTCCCCACAAATAATGTCAAACATTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAAATAGTTGTCCATGTCTCCCCACAAATAATGTCAAACATTATC  150

seq1  AGACAAAGCATACTAATATTTTTCTATCAACTTTCTAATTGTATATATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAGCATACTAATATTTTTCTATCAACTTTCTAATTGTATATATCT  200

seq1  TAGTAACATATATAGCCTAAATATTGTGTCAGTGAAAAGCTTTTACAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACATATATAGCCTAAATATTGTGTCAGTGAAAAGCTTTTACAATT  250

seq1  TAAACTATTTTGACTTTTTTATTTCAATTGCTCCCTTTAGTATGGTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTATTTTGACTTTTTTATTTCAATTGCTCCCTTTAGTATGGTTTCT  300

seq1  AGCTATGTAAAAGTGTTAGTTTTTTTATTGATAGTGGTATCTCCCATCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGTAAAAGTGTTAGTTTTTTTATTGATAGTGGTATCTCCCATCGT  350

seq1  GTATTTTCACGTCTAACCTTCATTTTAAAAAATTTTCTTAGTGTACCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCACGTCTAACCTTCATTTTAAAAAATTTTCTTAGTGTACCTTC  400

seq1  CATTGTTTTTAAAATTCTTCATGTCTTTTATTATTTTCCCCTAAAATATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTTTAAAATTCTTCATGTCTTTTATTATTTTCCCCTAAAATATC  450

seq1  TACTAAATAAAGAATAATTAGCTGAAATTTCCTTCTAATTACTAGAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAATAAAGAATAATTAGCTGAAATTTCCTTCTAATTACTAGAATGT  500

seq1  GTACATTGCTCTAAAGTACATTTCTATTTGTCACTTATTATAAAATAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTGCTCTAAAGTACATTTCTATTTGTCACTTATTATAAAATAAAG  550

seq1  TGAAATAAAATTCTTTTATTTTTATAGTGTCTGGCCCAAAGTCTCCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAAATTCTTTTATTTTTATAGTGTCTGGCCCAAAGTCTCCCATT  600

seq1  CTGGAGAGTTTCTGTGCTTCATTCCTCTTTGAACATCAACAGTTCTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGTTTCTGTGCTTCATTCCTCTTTGAACATCAACAGTTCTAACT  650

seq1  ATATAATTTAAAATAAAAATGGAAATGCTTTTGCTACAAAATTTACATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTTAAAATAAAAATGGAAATGCTTTTGCTACAAAATTTACATGC  700

seq1  CATTTAACTTTTCTAAGTCTTCCAATTATGTACAAAATGGACTTATTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAACTTTTCTAAGTCTTCCAATTATGTACAAAATGGACTTATTGTT  750

seq1  ATTATTCCCCAGAGATCACAATGGTTGCTTGACTCAATGGACCACACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCCCCAGAGATCACAATGGTTGCTTGACTCAATGGACCACACTGT  800

seq1  CATTAATGAAGAAACACAAGTCACCAGTCATATCAAGCACTACTGACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATGAAGAAACACAAGTCACCAGTCATATCAAGCACTACTGACACA  850

seq1  TTTTCAGAGAACAGTACCTCACATATTTGCTTCAAAGGGCACACGCTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAGAACAGTACCTCACATATTTGCTTCAAAGGGCACACGCTTAT  900

seq1  CTTAAATTGATGTAGTCTGCCTATTGAAGGCACCTGCAAGGTCCAGGGAA  950
      |||||||||||||||||||||||||||| |||||||||| || |||||||
seq2  CTTAAATTGATGTAGTCTGCCTATTGAAAGCACCTGCAA-GTTCAGGGAA  949

seq1  TGCCTTACAACTCTTGCCCAGATTTCTTATGAGTCATTTTCTCTGAGTTG  1000
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAC-ACTCTTGCCCAGATTTCTTATGAGTCATTTTCTCTGAGTTG  998

seq1  TTGTTTCCTTTAGTTTGGAAATGTCACTTCTCGTTGATTACATTGCATCT  1050
      ||| |||||||||||| |||||||||||||||||||| ||||||||||||
seq2  TTG-TTCCTTTAGTTT-GAAATGTCACTTCTCGTTGA-TACATTGCATCT  1045

seq1  AGCACACAGTGCATGATTAAGAAGCAGCTTTTAAACTAAAATTAGGCACT  1100
      |||||||||||||||||||   |||||| |||||||| |||||| |||||
seq2  AGCACACAGTGCATGATTA--GAGCAGC-TTTAAACT-AAATTAAGCACT  1091

seq1  TGACTCTTTAGATCATTACATGTGTGCCACACATGCACACACACACACAC  1150
       ||||||   |||||| |  | |||||||||||||       | ||| ||
seq2  GGACTCT---GATCATAATGT-TGTGCCACACATG-------AAACA-AC  1129

seq1  ACACACACACACACACACACACGCATGCATATGCACACACATAATCTTTA  1200
      ||||  |||||||| ||||||||||||||||||| ||||||| |||||  
seq2  ACAC-TACACACAC-CACACACGCATGCATATGC-CACACAT-ATCTTAT  1175

seq1  ATTTCCCTTTCCCAAGGTTTTTGAAGA  1227
      | ||       ||||||   |||||||
seq2  ACTT-------CCAAGG---TTGAAGA  1192

seq1: chr12_92056549_92057675
seq2: B6Ng01-168E12.g_68_1191 (reverse)

seq1  CTACAGATCCAAAACTACAGGAACTTCATGA-CACAGGAAAGGAACAGGA  49
      ||||||||||| |  |||||||||| ||||| |||| ||||||| ||| |
seq2  CTACAGATCCACA--TACAGGAACTCCATGACCACA-GAAAGGACCAGAA  47

seq1  TGTCTGAGA-GGAGTCCC-AGTTAGGTTCCGGTACTGGTAGCAT-AACAG  96
      |||| |||| |||||||| ||||||||  ||||||||||||||| |||||
seq2  TGTC-GAGAGGGAGTCCCAAGTTAGGT--CGGTACTGGTAGCATAAACAG  94

seq1  AA-GCCAGAG-GCCATCTACCAGGTCAAGGAGTCATTGCAATGAACAGTT  144
      || ||||||| ||||||||||||||||  ||||||||||||||| ||| |
seq2  AAGGCCAGAGAGCCATCTACCAGGTCA--GAGTCATTGCAATGACCAG-T  141

seq1  GCAAGCAAAGAAGTGTGGGCAAAAGGGTGTACTGTGGGATATACACTGTG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAAAGAAGTGTGGGCAAAAGGGTGTACTGTGGGATATACACTGTG  191

seq1  ACCCACTAAAGATTCCACAATGAGAATTTCTTTCTTTTGCGGGGAGATTG  244
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACCCACTAAAGATTCCACAATGAGAATTTCTTTCTTTTGCGGGGAGA-TG  240

seq1  CAAGGGTGGAAGAGACGTATGAGGGAAGGGAGAGATGAGTGGGATTGGGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTGGAAGAGACGTATGAGGGAAGGGAGAGATGAGTGGGATTGGGG  290

seq1  TGCCTGATGTGAAATTCCTAAAGAACCAAC-AAAAAGCTAAAAATGAAAT  343
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGCCTGATGTGAAATTCCTAAAGAACCAACAAAAAAGCTAAAAATGAAAT  340

seq1  CTTATTTAACTTATATATGGGCATTGAGACTGGGGTCACCACAATGTTTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTAACTTATATATGGGCATTGAGACTGGGGTCACCACAATGTTTC  390

seq1  CAGAGATGAGAGCATCTAAAATTCTTCTTAATATACCTCTTAATATTAAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATGAGAGCATCTAAAATTCTTCTTAATATACCTCTTAATATTAAA  440

seq1  CACTGTTCAGAAGGAGAAAATAGAGGAAAATAACTAGAAAATAAGAATGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTCAGAAGGAGAAAATAGAGGAAAATAACTAGAAAATAAGAATGT  490

seq1  GGTTGCATGATGGTATGACTGAGCGTCAATCACTCTAACATGTTATATTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCATGATGGTATGACTGAGCGTCAATCACTCTAACATGTTATATTG  540

seq1  TCAAGGAAATATGAGCCACAATATATAAATTACACTAAAATAACTTTAAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAAATATGAGCCACAATATATAAATTACACTAAAATAACTTTAAG  590

seq1  GAAATGGTAATAATCACATCAAGTGAATATTTAACACATGCAATAGGTCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGTAATAATCACATCAAGTGAATATTTAACACATGCAATAGGTCA  640

seq1  TGAACTTTGTGCACATTTTTCAAATTCCTTTTTTATTTCCTGCAGTTATA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTGTGCACATTTTTCAAATTCCTTTTTTATTTCCTGCAGTTATA  690

seq1  TGTATGGGAGATGGTTATGTGCACATAAGTGCAGATGCTTCAAAGCCCAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGGAGATGGTTATGTGCACATAAGTGCAGATGCTTCAAAGCCCAG  740

seq1  AGGTGTCAAATATTCCTCAAGTTGGAGTTACAGGCAATTGAGAATTATGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCAAATATTCCTCAAGTTGGAGTTACAGGCAATTGAGAATTATGT  790

seq1  GATATGAGTGCTAAACTCAAGTCCTCTGACCTTAACCAATGAGCTCTCTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGAGTGCTAAACTCAAGTCCTCTGACCTTAACCAATGAGCTCTCTC  840

seq1  TCTCTCTCCCTCTCTCTCTCTCTCTTTCTCTCTCTCTAATCCATATATAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCCTCTCTCTCTCTCTCTTTCTCTCTCTCTAATCCATATATAA  890

seq1  GCACTGTTATATTCAATACTCATGTGACTCCATGAGATATAATTATCACC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTTATATTCAATACTCATGTGACTCCATGAGATATAATTATCACC  940

seq1  TGTACTTCACAGGGAGGCCAGTGAGATTTAGGAAGGTATGAGACTATCTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCACAGGGAGGCCAGTGAGATTTAGGAAGGTATGAGACTATCTC  990

seq1  AGAGTCACCAGTTTATAAGTGGTTTGAGCCAAAATTTCTGATATGCGGCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACCAGTTTATAAGTGGTTTGAGCCAAAATTTCTGATATGCGGCT  1040

seq1  ACCAACAGCATCACTCTCTCAAGTATAAGAGAAAGATTAGATTGGGAGAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAGCATCACTCTCTCAAGTATAAGAGAAAGATTAGATTGGGAGAA  1090

seq1  AATGAAACACAGAGCTACCAATCTTCGTGAATTC  1127
      ||||||||||||||||||||||||||||||||||
seq2  AATGAAACACAGAGCTACCAATCTTCGTGAATTC  1124