BAC Information

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BAC

Clone NameB6Ng01-168H06
Chromosome12 (Build37)
Map Location 109,632,416 - 109,791,429
singlet/doubletdoublet
Overlap geneEml1
Upstream geneLOC100041251, LOC100040497, LOC668151, Bcl11b, Setd3, Ccnk, EG668158, 1600002O04Rik, Cyp46a1
Downstream geneEvl, Degs2, LOC668164, Yy1, Slc25a29, AI132487, Wars, Wdr25, BM948371, LOC668194, Dlk1, Gtl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168H06.bB6Ng01-168H06.g
ACCDH959687DH959688
length1,2111,006
definitionDH959687|Mus musculus domesticus DNA, BAC clone: B6Ng01-168H06, 5' end.DH959688|Mus musculus domesticus DNA, BAC clone: B6Ng01-168H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,790,205 - 109,791,429)(109,632,416 - 109,633,425)
sequence
gaattcactgagtgtggtggggacgatgactttccctctctcacaatgcc
tgtccccttatctatggaagtacttggcagcggttggcaggaatgactga
caaagggtgctgtgttccattctggcaagaaataaaaattacctttgatc
cattttgctctcacaacttgaggttagcctggggttcctgtattgactca
cagattgagctcttcagcttcaggtgactctccttaagataacggtgcac
agcttgaagagagacagtttctacaccacagccttgcagccgcccttggg
aagacaccgagacaggaggcatttgatggggtgggagggaaccgtcccgc
aggctctgtggaccttaagaggctgaatgaagctcacggctgttacaatc
ctgcctggagctaagctgagagtttccaccatttaagacgttattgccag
ctacattccttgggtagactggtcagaaactccgaggagccttgtcatgg
tgtttcactgtatctcccaaagagtatgttttggaaacttagagtccaat
gcaacaacatgggacctcagagggagaccctgggccacagggctctctgc
ccttatgagtggcttactgatgcttttcaaagggctggaggctgcaaact
gaatattcatgtgcagcaaattgaatgccattccccactgagccatcttg
ccagcccaagtcaaaaagacactgagggggaacaatctgagggtaagaaa
tacttcttgcgaccaaaagtacgtaatttcaaatattcaggatattaatt
agaggcagtcagataataaacagaagagttgctgttcaaagataaaagtc
ggcacacttttctattgtcagctcaaaaacaaagctgtcatctcaaaggg
aataagagagagtttattctagagccaatatgagtgaccatggctaggga
acacagatttacaccaaacaccatgctccaatgtggtaaaagcttctaga
agtttttagaattgcaaagagggctggaaaagatggcttaagtcaggtca
atttccagaaccacatggcgcctcgaacttctctgaaactcaattcctag
ggaatcggacaccctcccacgaacttgcatgctgacaaaacactatggca
cttaaaattaggaacgtattagagggcaccaagaagtacgtcaagggcca
tttccaaataa
gaattcaagactggcatgggcaacaacggcgaggccctgtgtcaaaacag
taatgacaaaagggtcatattctgggctggagagtctgtgtgctccccta
atgtcagcgatcttcactcttaagtgccattggacactttatttggacac
taaaatattggacactaaaaataattaaaatttttaatttaccgtatggt
atgtgtgtgtgcgtacactggtggggatgctatggcctggagcatgtgtg
gagatcagagaccaatctaaaggagtcattgctttccactcagtgaatcc
aggggattgaactcagctcattagccttctcagcaagcaccttcagagag
agaataagccctctctggccccttttggatcttttatggaaactctattc
cccttgcaagtcactttctcaaacccctaccagagtctgaactccaagaa
cacacaggcaatggccatccacgttagatacttgtaggcccgtgcccacg
tgagtgtgcaggaagatactcacacacccatcttagctgcaggattttca
gggccctgtgtgaagtgggcatgtgcagaatgccacaggattgcacaaca
gtgattctgaaccatctaaccagctagggcccggggcccagcacacacat
ggccacaaaaccacacccgtgcatatatcccgaatcctcacagacgaatg
tccccacaggacagacacccatgaacacacacttatatgcgtatacactg
aaaattctcacacatgttcagaggcaatgaggcttttaaaatattccttc
actgtgataggaagtgtgctgtttagcatttaatgagaaaaaaatatata
tcagagttgaatcacgtgtgatacgccttgcggcgaggagcacctgatgg
aacagtctgtgaatcattgtctttggtttcatgggttacgtttaattggg
tgtgacgagtttggaaacttttagggttctttcattcgcaaatcaaactc
aactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_109790205_109791429
seq2: B6Ng01-168H06.b_44_1254 (reverse)

seq1  TTATTTGGAAAATG-CCTTGACTTCTTACTTTCTTTTGTTTTGCCACTCT  49
      |||||||||||  | ||||||   | ||| ||||    |  |||| ||||
seq2  TTATTTGGAAATGGCCCTTGA---CGTAC-TTCT----TGGTGCC-CTCT  41

seq1  AAATACATATCTTTATTTTTATGTGCATTGGTGTTTTGTCAGCATGCATG  99
       ||||| |  |  || ||||| ||||  | |||||||||||||||||| |
seq2  -AATACGTTCC--TAATTTTAAGTGCCATAGTGTTTTGTCAGCATGCAAG  88

seq1  TCTGTGTGAGGGTGTCCGATCTCCTAGAACTGGAGTTTCAGACACTTCTG  149
      |  ||| |||||||||||||  ||||| | | |||||||||| |  |  |
seq2  TTCGTGGGAGGGTGTCCGATTCCCTAGGAATTGAGTTTCAGAGAAGTTCG  138

seq1  AGCTGCCATGTGGGTTCTGGGAATTGAACCTGGACTGAGCCATC-TCTCC  198
      ||  ||||||| |||||||| ||||| |||||   | ||||||| | |||
seq2  AGGCGCCATGT-GGTTCTGGAAATTG-ACCTGACTTAAGCCATCTTTTCC  186

seq1  AGCCCTCTTTTGCAATTCTAAAAACTTCTTGAAGCTTTTACCACATTGGA  248
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCCCTC-TTTGCAATTCTAAAAACTTCTAGAAGCTTTTACCACATTGGA  235

seq1  GCATGGTGTTTGGTGTAAATCTGTGTTCCCTAGCCATGGTCACTCATATT  298
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCATGGTGTTTGGTGTAAATCTGTGTTCCCTAGCCATGGTCACTCATA-T  284

seq1  TGGCTCTAGAATAAACTCTCTCTTATTCCCTTTGAGATGACAGCTTTGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTAGAATAAACTCTCTCTTATTCCCTTTGAGATGACAGCTTTGTT  334

seq1  TTTGAGCTGACAATAGAAAAGTGTGCCGACTTTTATCTTTGAACAGCAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCTGACAATAGAAAAGTGTGCCGACTTTTATCTTTGAACAGCAAC  384

seq1  TCTTCTGTTTATTATCTGACTGCCTCTAATTAATATCCTGAATATTTGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTTTATTATCTGACTGCCTCTAATTAATATCCTGAATATTTGAA  434

seq1  ATTACGTACTTTTGGTCGCAAGAAGTATTTCTTACCCTCAGATTGTTCCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACGTACTTTTGGTCGCAAGAAGTATTTCTTACCCTCAGATTGTTCCC  484

seq1  CCTCAGTGTCTTTTTGACTTGGGCTGGCAAGATGGCTCAGTGGGGAATGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTGTCTTTTTGACTTGGGCTGGCAAGATGGCTCAGTGGGGAATGG  534

seq1  CATTCAATTTGCTGCACATGAATATTCAGTTTGCAGCCTCCAGCCCTTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAATTTGCTGCACATGAATATTCAGTTTGCAGCCTCCAGCCCTTTG  584

seq1  AAAAGCATCAGTAAGCCACTCATAAGGGCAGAGAGCCCTGTGGCCCAGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATCAGTAAGCCACTCATAAGGGCAGAGAGCCCTGTGGCCCAGGG  634

seq1  TCTCCCTCTGAGGTCCCATGTTGTTGCATTGGACTCTAAGTTTCCAAAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCTGAGGTCCCATGTTGTTGCATTGGACTCTAAGTTTCCAAAAC  684

seq1  ATACTCTTTGGGAGATACAGTGAAACACCATGACAAGGCTCCTCGGAGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTTTGGGAGATACAGTGAAACACCATGACAAGGCTCCTCGGAGTT  734

seq1  TCTGACCAGTCTACCCAAGGAATGTAGCTGGCAATAACGTCTTAAATGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCAGTCTACCCAAGGAATGTAGCTGGCAATAACGTCTTAAATGGT  784

seq1  GGAAACTCTCAGCTTAGCTCCAGGCAGGATTGTAACAGCCGTGAGCTTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTCTCAGCTTAGCTCCAGGCAGGATTGTAACAGCCGTGAGCTTCA  834

seq1  TTCAGCCTCTTAAGGTCCACAGAGCCTGCGGGACGGTTCCCTCCCACCCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCTCTTAAGGTCCACAGAGCCTGCGGGACGGTTCCCTCCCACCCC  884

seq1  ATCAAATGCCTCCTGTCTCGGTGTCTTCCCAAGGGCGGCTGCAAGGCTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATGCCTCCTGTCTCGGTGTCTTCCCAAGGGCGGCTGCAAGGCTGT  934

seq1  GGTGTAGAAACTGTCTCTCTTCAAGCTGTGCACCGTTATCTTAAGGAGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGAAACTGTCTCTCTTCAAGCTGTGCACCGTTATCTTAAGGAGAG  984

seq1  TCACCTGAAGCTGAAGAGCTCAATCTGTGAGTCAATACAGGAACCCCAGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGAAGCTGAAGAGCTCAATCTGTGAGTCAATACAGGAACCCCAGG  1034

seq1  CTAACCTCAAGTTGTGAGAGCAAAATGGATCAAAGGTAATTTTTATTTCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTCAAGTTGTGAGAGCAAAATGGATCAAAGGTAATTTTTATTTCT  1084

seq1  TGCCAGAATGGAACACAGCACCCTTTGTCAGTCATTCCTGCCAACCGCTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAATGGAACACAGCACCCTTTGTCAGTCATTCCTGCCAACCGCTG  1134

seq1  CCAAGTACTTCCATAGATAAGGGGACAGGCATTGTGAGAGAGGGAACGTC  1198
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCAAGTACTTCCATAGATAAGGGGACAGGCATTGTGAGAGAGGGAAAGTC  1184

seq1  ATCGTCCCCACCACACTCAGTGAATTC  1225
      |||||||||||||||||||||||||||
seq2  ATCGTCCCCACCACACTCAGTGAATTC  1211

seq1: chr12_109632416_109633425
seq2: B6Ng01-168H06.g_67_1072

seq1  GAATTCAAGACTGGCATGGGCAACAACGGCGAGGCCCTGTGTCAAAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACTGGCATGGGCAACAACGGCGAGGCCCTGTGTCAAAACAG  50

seq1  TAATGACAAAAGGGTCATATTCTGGGCTGGAGAGTCTGTGTGCTCCCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACAAAAGGGTCATATTCTGGGCTGGAGAGTCTGTGTGCTCCCCTA  100

seq1  ATGTCAGCGATCTTCACTCTTAAGTGCCATTGGACACTTTATTTGGACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGCGATCTTCACTCTTAAGTGCCATTGGACACTTTATTTGGACAC  150

seq1  TAAAATATTGGACACTAAAAATAATTAAAATTTTTAATTTACCGTATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTGGACACTAAAAATAATTAAAATTTTTAATTTACCGTATGGT  200

seq1  ATGTGTGTGTGCGTACACTGGTGGGGATGCTATGGCCTGGAGCATGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTGCGTACACTGGTGGGGATGCTATGGCCTGGAGCATGTGTG  250

seq1  GAGATCAGAGACCAATCTAAAGGAGTCATTGCTTTCCACTCAGTGAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAGAGACCAATCTAAAGGAGTCATTGCTTTCCACTCAGTGAATCC  300

seq1  AGGGGATTGAACTCAGCTCATTAGCCTTCTCAGCAAGCACCTTCAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATTGAACTCAGCTCATTAGCCTTCTCAGCAAGCACCTTCAGAGAG  350

seq1  AGAATAAGCCCTCTCTGGCCCCTTTTGGATCTTTTATGGAAACTCTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGCCCTCTCTGGCCCCTTTTGGATCTTTTATGGAAACTCTATTC  400

seq1  CCCTTGCAAGTCACTTTCTCAAACCCCTACCAGAGTCTGAACTCCAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCAAGTCACTTTCTCAAACCCCTACCAGAGTCTGAACTCCAAGAA  450

seq1  CACACAGGCAATGGCCATCCACGTTAGATACTTGTAGGCCCGTGCCCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGCAATGGCCATCCACGTTAGATACTTGTAGGCCCGTGCCCACG  500

seq1  TGAGTGTGCAGGAAGATACTCACACACCCATCTTAGCTGCAGGATTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGCAGGAAGATACTCACACACCCATCTTAGCTGCAGGATTTTCA  550

seq1  GGGCCCTGTGTGAAGTGGGCATGTGCAGAATGCCACAGGATTGCACAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTGTGTGAAGTGGGCATGTGCAGAATGCCACAGGATTGCACAACA  600

seq1  GTGATTCTGAACCATCTAACCAGCTAGGGCCCGGGGCCCAGCACACACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCTGAACCATCTAACCAGCTAGGGCCCGGGGCCCAGCACACACAT  650

seq1  GGCCACAAAACCACACCCGTGCATATATCCCGAATCCTCACAGACGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAAAACCACACCCGTGCATATATCCCGAATCCTCACAGACGAATG  700

seq1  TCCCCACAGGACAGACACCCATGAACACACACTTATATGCGTATACACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACAGGACAGACACCCATGAACACACACTTATATGCGTATACACTG  750

seq1  AAAATTCTCACACATGTTCAGAGGCAATGAGGCTTTTAAAATATTCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTCACACATGTTCAGAGGCAATGAGGCTTTTAAAATATTCCTTC  800

seq1  ACTGTGATAGGAAGTGTGCTGTTTAGCATTTAATGAGAAAAAAATATATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGATAGGAAGTGTGCTGTTTAGCATTTAATGAGAAAAAAATATATA  850

seq1  TCAGAGTTGAATCACGTGTGAAACGCC-TGCGGCGAGGAGCACCTGATGG  899
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  TCAGAGTTGAATCACGTGTGATACGCCTTGCGGCGAGGAGCACCTGATGG  900

seq1  AACAGTCTGTGAATCATTGTCTTGGGTTTCATGGGTAACGTTTTAATTGG  949
      ||||||||||||||||||||||| |||||||||||| ||| |||||||||
seq2  AACAGTCTGTGAATCATTGTCTTTGGTTTCATGGGTTACG-TTTAATTGG  949

seq1  GTTGTGACGAGTTTGGGAAAACTTTTAGGTTTCTTCCATTCGCAAATCCA  999
      | ||||||||||||||  ||||||||||| ||||| ||||||||||| ||
seq2  G-TGTGACGAGTTTGG--AAACTTTTAGGGTTCTTTCATTCGCAAAT-CA  995

seq1  AACTCAACTGG  1010
      |||||||||||
seq2  AACTCAACTGG  1006