BAC Information

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BAC

Clone NameB6Ng01-168J01
Chromosome12 (Build37)
Map Location 45,218,661 - 45,219,796
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039059, ENSMUSG00000066507, LOC100039081
Downstream geneLOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168J01.bB6Ng01-168J01.g
ACCDH959771DH959772
length1,1171,147
definitionDH959771|Mus musculus domesticus DNA, BAC clone: B6Ng01-168J01, 5' end.DH959772|Mus musculus domesticus DNA, BAC clone: B6Ng01-168J01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtgctgtcctgaaaaaaaaaacttttttagaatatgtataagt
gtagagaaaatattcacaacataatattatataaaaagttttatttttca
ataaagagacattactttgttctcagaaacagtaaagctcacagcgtaag
tttagagccatgctcccccaaattattcataagtcattggaggtaggaga
gtaattgatttttaaagatttgttttaaaaacttttatttgcatgtgtgt
gcatatgtgtgcatgtgtgtatgtgatgtgtgtaggtgtgcacagaaaag
ggtgttgaatcccctagagtttcaaatggttataagccaccacacaggtg
ttgggaaccaactcaggtcctctggaagagcagctactgagtctagtctc
caggtgtggtgtagattcaaacttatgagtactgttctaaattttattgt
ttttaatgagaaaaatgctaaagattagcaatttaagaattattactgtt
ctctgtgactactgctaggcaagcattatttttaactcattctagttaca
ggctcttctgaccacctctgccagaagacatgaacatcatgtgaacagag
gggccactcaactacacagtccagctttctagctttaagataatcatgat
ttgaggatctcttaatattgaaatcagcttttcaactgtggagaagttag
aagattttcattgtcagagctagtggtccagactagtctttctacaccgg
agaatatttaattttgctttaaagtgggaaattctctgataatcctgggg
tgattaaccatggcattattctctttatttcaagaagagctgctcaaatt
taatgcttttgaatgagagtgaagggaagggatgtttgttcttagatctt
cttcattgtcttgaagcaatgttcttttggaaactacttgatgtctgttg
atgcagcaagggcattggatcgttagaagtgcatgctcacttgttatgtg
atcctatatgaaattgtcccacaaataaagctatacatctacccttaaga
gttacaataaacacctttacttttgtccaacagattaaccagtgaagaac
taaattctatcttgcag
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcgaatcaaaacatccctgagat
tccatctcataccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgctggtg
ggattgcaagcttttacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagaactaccagaggatcccgcaatacctctcctgggc
atatatccagaagatgttccaactggtaagaaggacacatgctccactct
gttcgtagcagccttatttataatagccagaagctggaaaaacccagatg
cccctcaacagtggaatggatacaaaaaatgtggtacaatggagtactac
tcagctattaaaaagaatgaatttatgaaattcctaggcaaatggattga
cctggagggcatcatcctgaatgaggtaacccaatcacaaaaaaactctc
actgataagtggatattagcccataaagttagaacacccaagatagaaga
tacaaagcacatgaaactcaagaagaacgaagaccaaagtgtggacactt
tgccccttcttagaattgggaacaaaacacccatggaaggagttacagag
acaaagtttggagctgagccaaaaggatggaccatttagagactaccata
tctggggatccatcccataatcagccgccaaactcagacaccattgcata
cactaccaagattttgctgaaaggaccctgatatagctgtctcttgtgag
actatgctggggcctagcaaacagagaagtggatgctcacagtcagctat
tgggatggatcacatggcccccaatggaggagctagagaaagtacccaag
gagctaaagggatctgcaactctattagtggaacacatattgaactaact
agtacccctggagctcgtgtcttctagctcatatgtaatcagaagtggct
agctggcatcagtgaagagagccaattggttctcaacttatctgcctcag
tacagggacgccagggcaagagtggaaagggggtgggataggaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_45218661_45219796
seq2: B6Ng01-168J01.b_43_1159 (reverse)

seq1  CTGCAAGAATTAGAATATTTAGTTCTTCTACTGGTTATATCCCTGTTTGG  50
      ||||||||  ||||  |||||||||||| |||||||| ||  |||||  |
seq2  CTGCAAGA--TAGA--ATTTAGTTCTTC-ACTGGTTA-AT--CTGTT--G  40

seq1  GACAAAAGTAAAGTGTTTTAATTTGTTAACTCTTTAGGGTAAGATTGTAT  100
      ||||||||||||| || || |||   |||||||| ||||| ||| |||||
seq2  GACAAAAGTAAAG-GTGTTTATT--GTAACTCTTAAGGGT-AGA-TGTAT  85

seq1  AGCTTTTATTTGTGGGACAATTTCAATATAGGATCACATATACAAGTGAG  150
      ||| |||||||||||||||||||| ||||||||||||||| |||||||||
seq2  AGC-TTTATTTGTGGGACAATTTC-ATATAGGATCACATA-ACAAGTGAG  132

seq1  CATGCAACTTCTAACGATCCAATGCCCTTGCTGCATCAACAGACATCAAG  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGC-ACTTCTAACGATCCAATGCCCTTGCTGCATCAACAGACATCAAG  181

seq1  TAGTTTCCAAAAGAACATTGCTTCAAGACAATGAAGAAGATCTAAGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCCAAAAGAACATTGCTTCAAGACAATGAAGAAGATCTAAGAACA  231

seq1  AACATCCCTTCCCTTCACTCTCATTCAAAAGCATTAAATTTGAGCAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCCTTCCCTTCACTCTCATTCAAAAGCATTAAATTTGAGCAGCTC  281

seq1  TTCTTGAAATAAAGAGAATAATGCCATGGTTAATCACCCCAGGATTATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAAATAAAGAGAATAATGCCATGGTTAATCACCCCAGGATTATCA  331

seq1  GAGAATTTCCCACTTTAAAGCAAAATTAAATATTCTCCGGTGTAGAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTCCCACTTTAAAGCAAAATTAAATATTCTCCGGTGTAGAAAGA  381

seq1  CTAGTCTGGACCACTAGCTCTGACAATGAAAATCTTCTAACTTCTCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTGGACCACTAGCTCTGACAATGAAAATCTTCTAACTTCTCCACA  431

seq1  GTTGAAAAGCTGATTTCAATATTAAGAGATCCTCAAATCATGATTATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAAGCTGATTTCAATATTAAGAGATCCTCAAATCATGATTATCTT  481

seq1  AAAGCTAGAAAGCTGGACTGTGTAGTTGAGTGGCCCCTCTGTTCACATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAGAAAGCTGGACTGTGTAGTTGAGTGGCCCCTCTGTTCACATGA  531

seq1  TGTTCATGTCTTCTGGCAGAGGTGGTCAGAAGAGCCTGTAACTAGAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGTCTTCTGGCAGAGGTGGTCAGAAGAGCCTGTAACTAGAATGA  581

seq1  GTTAAAAATAATGCTTGCCTAGCAGTAGTCACAGAGAACAGTAATAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAATAATGCTTGCCTAGCAGTAGTCACAGAGAACAGTAATAATTC  631

seq1  TTAAATTGCTAATCTTTAGCATTTTTCTCATTAAAAACAATAAAATTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTGCTAATCTTTAGCATTTTTCTCATTAAAAACAATAAAATTTAG  681

seq1  AACAGTACTCATAAGTTTGAATCTACACCACACCTGGAGACTAGACTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTACTCATAAGTTTGAATCTACACCACACCTGGAGACTAGACTCAG  731

seq1  TAGCTGCTCTTCCAGAGGACCTGAGTTGGTTCCCAACACCTGTGTGGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCTCTTCCAGAGGACCTGAGTTGGTTCCCAACACCTGTGTGGTGG  781

seq1  CTTATAACCATTTGAAACTCTAGGGGATTCAACACCCTTTTCTGTGCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAACCATTTGAAACTCTAGGGGATTCAACACCCTTTTCTGTGCACA  831

seq1  CCTACACACATCACATACACACATGCACACATATGCACACACATGCAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACACATCACATACACACATGCACACATATGCACACACATGCAAAT  881

seq1  AAAAGTTTTTAAAACAAATCTTTAAAAATCAATTACTCTCCTACCTCCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTTTAAAACAAATCTTTAAAAATCAATTACTCTCCTACCTCCAA  931

seq1  TGACTTATGAATAATTTGGGGGAGCATGGCTCTAAACTTACGCTGTGAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTATGAATAATTTGGGGGAGCATGGCTCTAAACTTACGCTGTGAGC  981

seq1  TTTACTGTTTCTGAGAACAAAGTAATGTCTCTTTATTGAAAAATAAAACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTTTCTGAGAACAAAGTAATGTCTCTTTATTGAAAAATAAAACT  1031

seq1  TTTTATATAATATTATGTTGTGAATATTTTCTCTACACTTATACATATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATAATATTATGTTGTGAATATTTTCTCTACACTTATACATATTC  1081

seq1  TAAAAAAGTTTTTTTTTTCAGGACAGCACTGAATTC  1136
      ||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGTTTTTTTTTTCAGGACAGCACTGAATTC  1117