BAC Information

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BAC

Clone NameB6Ng01-168L23
Chromosome12 (Build37)6 (Build37)
Map Location 49,310,972 - 49,312,0976,507,734 - 6,508,373
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG664891
Downstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168L23.bB6Ng01-168L23.g
ACCDH959905DH959906
length1,107945
definitionDH959905|Mus musculus domesticus DNA, BAC clone: B6Ng01-168L23, 5' end.DH959906|Mus musculus domesticus DNA, BAC clone: B6Ng01-168L23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,310,972 - 49,312,097)(6,507,734 - 6,508,373)
sequence
gaattcttcctaaataaagcctcataacttctgccagttgatctgtcaaa
gcctcctaagtaggaaaaacgcttttctttggataacttcacaataaaga
atttttacacatatagaatttgagttatattcataatcccattttttata
tgaaaagcaaaataaaagcaaaagaaaactggaaaactaataattgttaa
ttttatctgaaatggatgatattagaaaagaagtaataaaaaattaataa
aagttactatgaacaatttaacttaaggcaagaataatattctaaaatat
ttaaaactattaatttcagaaaaaactaaaatttcccattaaggtttacc
agtttcttctcttcattgttctccttaccttgacaatggtttctcatact
actttagcaatttgttgtgaatttgccctgaaagttaaacactcatttaa
acatttttttaattctaatagtagcataaaatattgaaagtatgaagcac
tttatttacttctgcttgagatacaaattatttattataaacatataagc
attctgtgattataaaatatacagagacaaattaatatattcaatcactt
taactcttagccattttctattgttttgttaacaacctagatttccctca
acagaggaatggatacagaaaatgtggtacatttacacaatggcatacta
gtgagctattaaaaacaatgacttcatataatttgcaagcaaatggatgg
aactagaaaatatcatgctacgtaaggtaaccagttaaaaaagaacacat
atggtatgtactcactaataagtgaatatcagacaaaaagctcgggaata
cccaagattcaacccacagtccacatgaagttctagaagaaagaagatca
aaatatgaatgcttcagtcctacttagaagggtaacaaataatcacagga
gatagagacagggaagacctggagcagagaggaggggaaggttaaaagac
gcagaatctgtgtatgaaaagaaggagagagcagagagggtcagaaatga
acagagcatgggggatgggactgagtagcaccagaaagtccagatgccag
aaaagca
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtctaccttcttgagttatttatatatattgaatattagtccc
ttgtctgatttaggataggtaaagatcctttcccaatcttttggtggcct
tttggccttattaacagtgtcttttgtttttttgttttttgttttttttt
tttttttttaacattaaagaacatgtttatttcattatctgcttggattt
atttttgttttataacaaaaaaataagtaaataaatgttttgatttaatc
tttttggttcagatgtcttgatcttttgcctctattcctaaattttatat
tcatgatttataagaaacttacatagtcccaataaagtccatgtaataat
tttttaatattaatcaaacagtcagatgttgggattcatcagatttccat
atccaattttacaagatgtttctatgaaatgacattatactttaatgtct
tttgtgtttcttttactgtaacatttactgaaatttttaaggaggtcctt
taaaacttgtgtttttaaaatattaatcattttagatatctgtaatttac
ttagtatctgggatattaataatgttcttaagtggttggtagagtctgtt
ggctctttggtcatacttttaagaatcatatctctattaaaattggggaa
agtgagccctggatattttagcagtatgtatattctcaggtactgcatac
agtcatcttacacaacaatgtttatggaagttgttgacggttgccattcc
tattgtctaagtgggagatttagtttagcatagaaaggactctttatagc
taatatgtgtcttttgccttacagaagctttgcagttttatgaggtccca
tttgtggattctcgatctacagcacaagccattgctatctatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_49310972_49312097
seq2: B6Ng01-168L23.b_46_1152 (reverse)

seq1  TGCTTTTCTGGCATCTGGGACTTTCTGGTGCCTACCTCCAGTTCCCCATC  50
      |||||||||||||||| ||||||||||||| ||||   ||||  ||||||
seq2  TGCTTTTCTGGCATCT-GGACTTTCTGGTG-CTAC--TCAGT--CCCATC  44

seq1  CCCCATTGCTCTGTTCAATTTTCTGACCCTCTCTGCCTCTCTCCCTTCTT  100
      ||||| |||||||||||  |||||||||||||||| |||||| |||||||
seq2  CCCCA-TGCTCTGTTCA--TTTCTGACCCTCTCTG-CTCTCT-CCTTCTT  89

seq1  TTCATACACCAGATTCTGCCCTTCTTTTAACCTTCCCCTCCTCTCTTGCT  150
      |||||||| |||||||||  | ||||||||||||||||||||||| ||||
seq2  TTCATACA-CAGATTCTG--CGTCTTTTAACCTTCCCCTCCTCTC-TGCT  135

seq1  CCCAGGTCCTTCCCTGTCTCTATCTCCTGTGATTATTTTGTTACCCCTTC  200
       |||||| ||||||||||||||||||||||||||| ||||||| ||||||
seq2  -CCAGGT-CTTCCCTGTCTCTATCTCCTGTGATTA-TTTGTTA-CCCTTC  181

seq1  TAAGTAGGACTGAAGCATTCATATTTTGATCTTCTTTCTTCTAGAACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGGACTGAAGCATTCATATTTTGATCTTCTTTCTTCTAGAACTTC  231

seq1  ATGTGGACTGTGGGTTGAATCTTGGGTATTCCCGAGCTTTTTGTCTGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGACTGTGGGTTGAATCTTGGGTATTCCCGAGCTTTTTGTCTGATA  281

seq1  TTCACTTATTAGTGAGTACATACCATATGTGTTCTTTTTTAACTGGTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTATTAGTGAGTACATACCATATGTGTTCTTTTTTAACTGGTTAC  331

seq1  CTTACGTAGCATGATATTTTCTAGTTCCATCCATTTGCTTGCAAATTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGTAGCATGATATTTTCTAGTTCCATCCATTTGCTTGCAAATTATA  381

seq1  TGAAGTCATTGTTTTTAATAGCTCACTAGTATGCCATTGTGTAAATGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCATTGTTTTTAATAGCTCACTAGTATGCCATTGTGTAAATGTAC  431

seq1  CACATTTTCTGTATCCATTCCTCTGTTGAGGGAAATCTAGGTTGTTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTCTGTATCCATTCCTCTGTTGAGGGAAATCTAGGTTGTTAACA  481

seq1  AAACAATAGAAAATGGCTAAGAGTTAAAGTGATTGAATATATTAATTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATAGAAAATGGCTAAGAGTTAAAGTGATTGAATATATTAATTTGT  531

seq1  CTCTGTATATTTTATAATCACAGAATGCTTATATGTTTATAATAAATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATATTTTATAATCACAGAATGCTTATATGTTTATAATAAATAAT  581

seq1  TTGTATCTCAAGCAGAAGTAAATAAAGTGCTTCATACTTTCAATATTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCTCAAGCAGAAGTAAATAAAGTGCTTCATACTTTCAATATTTTA  631

seq1  TGCTACTATTAGAATTAAAAAAATGTTTAAATGAGTGTTTAACTTTCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTATTAGAATTAAAAAAATGTTTAAATGAGTGTTTAACTTTCAGG  681

seq1  GCAAATTCACAACAAATTGCTAAAGTAGTATGAGAAACCATTGTCAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTCACAACAAATTGCTAAAGTAGTATGAGAAACCATTGTCAAGGT  731

seq1  AAGGAGAACAATGAAGAGAAGAAACTGGTAAACCTTAATGGGAAATTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAACAATGAAGAGAAGAAACTGGTAAACCTTAATGGGAAATTTTA  781

seq1  GTTTTTTCTGAAATTAATAGTTTTAAATATTTTAGAATATTATTCTTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTCTGAAATTAATAGTTTTAAATATTTTAGAATATTATTCTTGCC  831

seq1  TTAAGTTAAATTGTTCATAGTAACTTTTATTAATTTTTTATTACTTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTAAATTGTTCATAGTAACTTTTATTAATTTTTTATTACTTCTTT  881

seq1  TCTAATATCATCCATTTCAGATAAAATTAACAATTATTAGTTTTCCAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATATCATCCATTTCAGATAAAATTAACAATTATTAGTTTTCCAGTT  931

seq1  TTCTTTTGCTTTTATTTTGCTTTTCATATAAAAAATGGGATTATGAATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGCTTTTATTTTGCTTTTCATATAAAAAATGGGATTATGAATAT  981

seq1  AACTCAAATTCTATATGTGTAAAAATTCTTTATTGTGAAGTTATCCAAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAATTCTATATGTGTAAAAATTCTTTATTGTGAAGTTATCCAAAG  1031

seq1  AAAAGCGTTTTTCCTACTTAGGAGGCTTTGACAGATCAACTGGCAGAAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCGTTTTTCCTACTTAGGAGGCTTTGACAGATCAACTGGCAGAAGT  1081

seq1  TATGAGGCTTTATTTAGGAAGAATTC  1126
      ||||||||||||||||||||||||||
seq2  TATGAGGCTTTATTTAGGAAGAATTC  1107

seq1: chr6_6507734_6508373
seq2: B6Ng01-168L23.g_279_923 (reverse)

seq1  ACATATTAGCTTCAAAGAGTCCTTTCTATGCTAAACTAAATCTCCCACTT  50
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  ACATATTAGCTATAAAGAGTCCTTTCTATGCTAAACTAAATCTCCCACTT  50

seq1  AGACAGTAGGAATGGCAACCGTCAACAACTTCCATAAACTTTGTTGTGTA  100
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGACAATAGGAATGGCAACCGTCAACAACTTCCATAAACATTGTTGTGTA  100

seq1  AGATGACTGTATGCAGTACTTGAGAATATACATACTGCTAAAATATCCAG  150
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGATGACTGTATGCAGTACCTGAGAATATACATACTGCTAAAATATCCAG  150

seq1  GGCTCAC-TTCCCCAATTTTAATAGAGATATGATTCTTAGAAGTATGACC  199
      ||||||| ||||||||||||||||||||||||||||||| ||||||||||
seq2  GGCTCACTTTCCCCAATTTTAATAGAGATATGATTCTTAAAAGTATGACC  200

seq1  AAAGAGCCAACAGACTCTA-CAACCACTTAAGAACATTATTAATATCCCA  248
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAGAGCCAACAGACTCTACCAACCACTTAAGAACATTATTAATATCCCA  250

seq1  GAAACTAAGTA----ACAGATATCTAAAATGATTAATATTTTAAAAACAC  294
      || ||||||||    |||||||||||||||||||||||||||||||||||
seq2  GATACTAAGTAAATTACAGATATCTAAAATGATTAATATTTTAAAAACAC  300

seq1  AAGTTTTAAAGGGCCTCCTTAAAAATTTCAGTAAATGTTACAGTAAAAGA  344
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTAAAGGACCTCCTTAAAAATTTCAGTAAATGTTACAGTAAAAGA  350

seq1  AACACAAAAGACATTAAAGTATAATGTCATTTCATAGAAACATCTTGTAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAAAGACATTAAAGTATAATGTCATTTCATAGAAACATCTTGTAA  400

seq1  AATTGGATACGGAACTCTCATGAATCCCAACATCTGACTGTTTGATTAAT  444
      ||||||||| |||| ||| |||||||||||||||||||||||||||||||
seq2  AATTGGATATGGAAATCTGATGAATCCCAACATCTGACTGTTTGATTAAT  450

seq1  ATTAAAAAATTATTACATGGACTTTATTGGGACTATGTAAGTTTCTTATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAATTATTACATGGACTTTATTGGGACTATGTAAGTTTCTTATA  500

seq1  AATCATGAATATAAAATTTAGGAATAGAGGCAAAAGATCAAGACATCTGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGAATATAAAATTTAGGAATAGAGGCAAAAGATCAAGACATCTGA  550

seq1  ACCAAAAAGATTAAATCAAAACATTTATTTACTTATTTTTTTTGTTATAA  594
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACCAAAAAGATTAAATCAAAACATTTATTTACTTA-TTTTTTTGTTATAA  599

seq1  AACAAAAATAAATTGAAGCAGATAATGAAATAAACATGTTCTTTAA  640
      |||||||||||||  |||||||||||||||||||||||||||||||
seq2  AACAAAAATAAATCCAAGCAGATAATGAAATAAACATGTTCTTTAA  645