BAC Information

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BAC

Clone NameB6Ng01-170B07
Chromosome12 (Build37)X (Build37)
Map Location 115,006,274 - 115,007,428113,827,151 - 113,827,635
singlet/doubletsingletsinglet
Overlap geneIgh
Upstream genePld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098
Downstream geneIghv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170B07.bB6Ng01-170B07.g
ACCDH960885DH960886
length1,1651,156
definitionDH960885|Mus musculus domesticus DNA, BAC clone: B6Ng01-170B07, 5' end.DH960886|Mus musculus domesticus DNA, BAC clone: B6Ng01-170B07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(115,006,274 - 115,007,428)(113,827,151 - 113,827,635)
sequence
gaattctgagtcagaaactgtcactaacaaaacaaaaccaaatagagaaa
caatacaatttttctgtttctcatgtgcacacaacagacagaatcttatc
tttatgaattaccttttcaaataatgacaaggaaagccaagctgagccca
aagtccatggtgagtggtctgtattcaatgctgattacccaatgtgagga
cctgggaatccaggtctgggctcctctgagagcttcagggtcaggacaga
gctggttttcatgggtgcagagaagtaatatttgtatgtcttcctgctgt
tgcatgctctggagttggacatgggcagaagaaagtcctcatagcagata
taagacatgaaagacactgttttaagttgcagactttgaaaaatatggag
gtttcatattaacagttgtttttggttaagatttcaccacactccattta
gttttccttagagcatggacatagaacatgtcttgtttccatattgtcag
gtgtccttgtgtaaatgtgtaattaaatatcaccacacataattgtgatt
ctagataaatgcttagcatttgccactgtttgagctactcatggcaaatt
tttaatgtggatcgaggaatgtattcttgaattttttacatttaaatctg
gtacacaaatgtacataacagaagaactctctttttgactacttcctagc
attcgattagcaatttttctaaaatatttatctttatttatgtgtatatg
tgtttgtgggcgcagtgtagttctctcgaaggccacatttatactgagtt
ttctatatgttcatgtggttatgaggtccacattgtgggtattaggaatt
taacctggatccctcaaagttcaatattctctcttaaccactgagctatt
tctgcagcacttggagtaacaatgatgatattccatctcatttttgctgt
ggctctgatctcaaaggactgaaaatcacattaatcagtgtgaaactgga
ggaaacatttttcagtgacaccaggcaccattcttattcaaatgaaacag
aaagcgtgaatctgagtaaagtgaaaataaggcaggctggatgcagcaaa
gacagtgttgaaatgagaagactattccgctgaatgggaagaatattttt
tattatctaataata
gaattctcaccggaggaataccgaaaggctaagaaacacctgaaaaatgt
tcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagatt
ccatctcacaccagtcagaatggctaagttaaaaaattcaggtgacagca
gatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgg
gattgcagggttgtacaaccactctggaagtgattagtctggcagttcct
cagaaaattggacatagtactactggaggatcccgcaatacctctcctgg
gcatatatccagaagatgtcccaaccggtaagaaggacacatgctccact
atgttcatagcagccttatttataatagccagaagctggaaagaacccag
atgtccctcaacagaggaatggatacaaaaaatgtggtacatttacacaa
tggagtactactctgctattaaaaagaatgaattcacgaaattcctaggc
aaatggttggacctggagggcatcatcctgagtgaggtaacccaatcaca
aaagatctcaaatgaaatgtactcactgataagtggatattaacccagaa
acttagtattgcgagatataaggtacaatatgtaaaacatatgaaactga
agaagaacgaagaccgaagtgtggacactttgctcattcttagaattgga
aacaatcacccatggaaggagttacagagacaaagtttggagctgagata
aaaggatggtccatctagagactgccatatccagggatccatcccataat
tagcctccaagcgttgacaccattgcatacactagcaagcctttgttgca
aggacggtgatatagctgtcccttgtgagactaggccggggcatatcaaa
cacagaagtggatgctcacagtcactattggatggatcacagggccccat
ggaggagctaaagaaagtatccaaggagctaagagatctgcacctaatcg
gaggaacaacattatgactaaccagtactccgagctctttgactctagct
gcttatgtatcaaaagatgacctagtcggcatcactggaaaagaaggcct
attggtcagcaacgtattatgccaatacaaggatgcacaggcaaataaat
gtgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_115006274_115007428
seq2: B6Ng01-170B07.b_45_1209

seq1  GAATTCTGAGTCAGAAACTGTCACTAACAAAACAAAACCAAATAGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGTCAGAAACTGTCACTAACAAAACAAAACCAAATAGAGAAA  50

seq1  CAATACAATTTTTCTGTTTCTCATGTGCACACAACAGACAGAATCTTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAATTTTTCTGTTTCTCATGTGCACACAACAGACAGAATCTTATC  100

seq1  TTTATGAATTACCTTTTCAAATAATGACAAGGAAAGCCAAGCTGAGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAATTACCTTTTCAAATAATGACAAGGAAAGCCAAGCTGAGCCCA  150

seq1  AAGTCCATGGTGAGTGGTCTGTATTCAATGCTGATTACCCAATGTGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATGGTGAGTGGTCTGTATTCAATGCTGATTACCCAATGTGAGGA  200

seq1  CCTGGGAATCCAGGTCTGGGCTCCTCTGAGAGCTTCAGGGTCAGGACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAATCCAGGTCTGGGCTCCTCTGAGAGCTTCAGGGTCAGGACAGA  250

seq1  GCTGGTTTTCATGGGTGCAGAGAAGTAATATTTGTATGTCTTCCTGCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTTTCATGGGTGCAGAGAAGTAATATTTGTATGTCTTCCTGCTGT  300

seq1  TGCATGCTCTGGAGTTGGACATGGGCAGAAGAAAGTCCTCATAGCAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCTCTGGAGTTGGACATGGGCAGAAGAAAGTCCTCATAGCAGATA  350

seq1  TAAGACATGAAAGACACTGTTTTAAGTTGCAGACTTTGAAAAATATGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACATGAAAGACACTGTTTTAAGTTGCAGACTTTGAAAAATATGGAG  400

seq1  GTTTCATATTAACAGTTGTTTTTGGTTAAGATTTCACCACACTCCATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATATTAACAGTTGTTTTTGGTTAAGATTTCACCACACTCCATTTA  450

seq1  GTTTTCCTTAGAGCATGGACATAGAACATGTCTTGTTTCCATATTGTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTTAGAGCATGGACATAGAACATGTCTTGTTTCCATATTGTCAG  500

seq1  GTGTCCTTGTGTAAATGTGTAATTAAATATCACCACACATAATTGTGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTTGTGTAAATGTGTAATTAAATATCACCACACATAATTGTGATT  550

seq1  CTAGATAAATGCTTAGCATTTGCCACTGTTTGAGCTACTCATGGCAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATAAATGCTTAGCATTTGCCACTGTTTGAGCTACTCATGGCAAATT  600

seq1  TTTAATGTGGATCGAGGAATGTATTCTTGAATTTTTTACATTTAAATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTGGATCGAGGAATGTATTCTTGAATTTTTTACATTTAAATCTG  650

seq1  GTACACAAATGTACATAACAGAAGAACTCTCTTTTTGACTACTTCCTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAAATGTACATAACAGAAGAACTCTCTTTTTGACTACTTCCTAGC  700

seq1  ATTCGATTAGCAATTTTTCTAAAATATTTATCTTTATTTATGTGTATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGATTAGCAATTTTTCTAAAATATTTATCTTTATTTATGTGTATATG  750

seq1  TGTTTGTGGGCGCAGTGTAGTTCTCTCGAAGGCCACATTTATACTGAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGGGCGCAGTGTAGTTCTCTCGAAGGCCACATTTATACTGAGTT  800

seq1  TTCTATATGTTCATGTGGTTATGAGGTCCACATTGTGGGTATTAGGAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATATGTTCATGTGGTTATGAGGTCCACATTGTGGGTATTAGGAATT  850

seq1  TAACCTGGATCCCTCAAAGTTCAATATTCTCTCTTAACCACTGAGCTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGGATCCCTCAAAGTTCAATATTCTCTCTTAACCACTGAGCTATT  900

seq1  TCTGCAGCACTTGGAGTAACAATGATGATATTCCATCTCATTTTTGCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCACTTGGAGTAACAATGATGATATTCCATCTCATTTTTGCTGT  950

seq1  GGCTCTGATCTCAAAGGACTGAAAATCACATTAATCAGTGTGAAACTGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGATCTCAAAGGACTGAAAATCACATTAATCAGTGTGAAACTGGA  1000

seq1  GGACACA-TTTTCAGTGACAACCAGGCACCA-TCTTA-TCAAATGAAACA  1047
      ||| ||| ||||||||||| ||||||||||| ||||| ||||||||||||
seq2  GGAAACATTTTTCAGTGAC-ACCAGGCACCATTCTTATTCAAATGAAACA  1049

seq1  GAAAGCAGTG-ATCTGAGTAAAGGTAAAATTAGGGCAGGCTGATTGCAGC  1096
      |||||| ||| ||||||||||| || ||| || |||||||||  ||||||
seq2  GAAAGC-GTGAATCTGAGTAAA-GTGAAAATAAGGCAGGCTGGATGCAGC  1097

seq1  ATAGACAGTGTAG-AATGAGAAGACTATTCAGTTAGATGGGAAGAATTAT  1145
      | ||||||||| | |||||||||||||||| | |  |||||||||||  |
seq2  AAAGACAGTGTTGAAATGAGAAGACTATTCCGCTGAATGGGAAGAATATT  1147

seq1  TT--------TAATAATA  1155
      ||        ||||||||
seq2  TTTTATTATCTAATAATA  1165

seq1: chrX_113827151_113827635
seq2: B6Ng01-170B07.g_931_1224 (reverse)

seq1  ATTCACATTTATTTGCTGCTAGGGCAGAGAAAGTCTTTTTTTCTGCTTTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGCTGCTTGGTCAGAGAAAGTCTTTTCTTTTTTTTTTCCATTTTTTATTA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATAC  150
                                                        
seq2  --------------------------------------------------  0

seq1  CCAACCACCCCCACTCCCCTAACCACCCACTCCCCCTTTTTGGCCCTGGC  200
                                  | || |  || || |||   ||
seq2  ----------------------------ATTCACATTTATTTGCCTGTGC  22

seq1  GTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCT  250
       |  || |||| |  |||||| | |  |||| || ||||| |||||   |
seq2  AT--CCTTGTATT--GGCATA-ATACGTTGC-TGACCAATAGGCCTTCTT  66

seq1  TTCCAGTGATGGCTGACTAGGCCATCTTTTGATACATATGCAGCTAGAGT  300
      |||||||||| || ||||||| |||||||||||||||| |||||||||||
seq2  TTCCAGTGAT-GCCGACTAGGTCATCTTTTGATACATAAGCAGCTAGAGT  115

seq1  C-AAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGG  349
      | ||||||| ||| ||||||||||| ||||||||||||||| || ||  |
seq2  CAAAGAGCT-CGGAGTACTGGTTAG-TCATAATGTTGTTCCTCCGATTAG  163

seq1  GTTGCAGTTCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGG  399
      | ||||| || | |||||||||||| |||||||| ||||||||||||  |
seq2  G-TGCAGATCTC-TTAGCTCCTTGGATACTTTCTTTAGCTCCTCCAT--G  209

seq1  GAGGCCTGTGATCCATCCATTAGCTGACTGTAAGCATCCACTTCTGTGTT  449
      | | ||||||||||||||| ||| ||||||| ||||||||||||||||||
seq2  GGGCCCTGTGATCCATCCAATAG-TGACTGTGAGCATCCACTTCTGTGTT  258

seq1  TGCTAGGCCCAGGCATAGTCTCACAAGAGACAGCTA  485
      || || |||| ||| |||||||||||| ||||||||
seq2  TGATATGCCCCGGCCTAGTCTCACAAGGGACAGCTA  294