BAC Information

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BAC

Clone NameB6Ng01-170B19
Chromosome12 (Build37)
Map Location 106,929,074 - 106,929,766
singlet/doubletsinglet
Overlap gene4933433P14Rik
Upstream geneDicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik
Downstream geneAk7, Papola, Vrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170B19.bB6Ng01-170B19.g
ACCDH960909DH960910
length1,2421,004
definitionDH960909|Mus musculus domesticus DNA, BAC clone: B6Ng01-170B19, 5' end.DH960910|Mus musculus domesticus DNA, BAC clone: B6Ng01-170B19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttggaccaaataggaggttaaacacatgcaggaagccacgggg
aaaaacaaatgataagaaagaggacaaataccaccaaactgacaaagtga
gagaaacttacatacatctgtcaataataatttgggatatttcaaaactt
tatttttaattaggtgtcttatgtgtgaccgtgtgtatgtgagttcagag
gccctcggaggccatacatggccataggatccccttggagttgagttatg
tgtttgcaaatcggctgatatggatgctggaaaccaaactccagtcctct
agaaaggacacagactagaagattagattaggaaacagtctaaagtatct
gtctaatgtaacaatctaatctatctttctgttttctgcctccaagaacc
atctcatggtcaaagatagatgccaccttggggtaaaagaatagaaaagt
gtattctatgaatgtgaaatgagtatacaagcagccacaagtattcaaat
atctagcacaatagaattaaaaccacaactactcagaaaagagagggtca
ctgtgatggtttgtatagtctcagcccagggagtggcacttttagaagtt
gtggccctattggtgtaggtgtggccttgttggagtaggtgtgtcactgt
cggcatgggctttaagaccttcatctcagctgcctggaagtcagtcttct
gctggcagccttcagatgaagatgtagaactctcagctctgcctgcacca
tgcctgcccggatgctgccatgtttcccacctttatgataatagactgaa
cctctgaacctgtaagccagccccaattaaatggtgttcttataagagtt
gccttggtcatggtatctgtacacagcagtaaaaccctaagattgtcacc
ttttgttctttaaggacggtctatcgagaggatttatattctaaacatgt
atccaccaagcacaggtgcagccagcttcataaacacacaccactggatg
tcagccacagataaccccaacacagaatggggggaactcagtacccgact
ctcaaggtatcccgaccaattgtaacaggagcataaagtaattaatacca
gaatcaaatggaccttgctgataccagaggaatcttctagagactgtcat
cttctctatacctttaactgtcagggtaaccgtaggcaaagctcacgaat
aaggaatctgtggataaatgcctcctctacctcttctggaat
gaattcccagaacccatttggcagttcacaccatctgtatctcaagttcc
agggaaactgatgtcctcttctggccttggtggtcactgcatatacatga
tgcacaggcaaacacagacgaagcacccatacatataaaataaaatttaa
aaaaagttttaagtgtagaggaattttaattcagcaacatgactgctctg
gcaaaggatcatgtccaaagaccttgtaggtctctgtgttccatctggaa
tacaagcgctctgttaaccccaaaagacagatggtaggagatctcttgag
ttcaaggccaacctggtatagaaaaagtttcaggtaaagaaaagcttaag
tccaggtatggtggtacctgcctttaatcctaccactgaggagacagagg
catgtgagttcagtcagtctgttgagttcaaatcagttgatttggtgcag
ttgagatttaaggagttgagaggttgagaggggttgcagttgagtgcaga
ttggggacctgagttatgtcagttgaggcagttgtgttcagtgagtcagt
gcaggtcaactgaggcagctgaagccagagaataaaaagccaagtgatta
gaacagattgttagagttagtttaaggctaagagcaaaaaagtccaaagc
tgagagaagccggtttgactcagttggcttggagaagagtttgagacaga
tcagctgcattgaaccagccagccagagttcagaaagagcttagaaaggg
ttgagctcgttcagcagaagcctgagagagaacgtcttaaggtgaataaa
aattacttttttcatgtaagtatatatatgccagagccattgcaaacaat
atacaggatataaagattttaaaaggtttgagttttgcctaatctgacat
tgctaacatgattggattgtttctttttcccttcattttttaagagttgc
taaaacaagtaaacttctgtcagacattgctacggtcccttccgctctca
gcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_106929074_106929766
seq2: B6Ng01-170B19.g_385_1072

seq1  TATAGAAAAAGTTTCAGGTAAAGAAAAGCTTAAGTCCAGGTATGGTGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAAAAGTTTCAGGTAAAGAAAAGCTTAAGTCCAGGTATGGTGGTA  50

seq1  CCTGCCTTTAATCCTACCACTGAGGAGACAGAGGCATGTGAGTTCAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTTAATCCTACCACTGAGGAGACAGAGGCATGTGAGTTCAGTCA  100

seq1  GTCTGTTGAGTTCAAATCAGTTGATTTGGTGCAGTTGAGATTTAAGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTGAGTTCAAATCAGTTGATTTGGTGCAGTTGAGATTTAAGGAGT  150

seq1  TGAGAGGTTGAGAGGGGTTGCAGTTGAGTGCAGATTGGGGACCTGAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGTTGAGAGGGGTTGCAGTTGAGTGCAGATTGGGGACCTGAGTTA  200

seq1  TGTCAGTTGAGGCAGTTGTGTTCAGTGAGTCAGTGCAGGTCAACTGAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTTGAGGCAGTTGTGTTCAGTGAGTCAGTGCAGGTCAACTGAGGC  250

seq1  AGCTGAAGCCAGAGAATAAAAAGCCAAGTGATTAGAACAGATTGTTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAGCCAGAGAATAAAAAGCCAAGTGATTAGAACAGATTGTTAGAG  300

seq1  TTAGTTTAAGGCTAAGAGC-AAAAAGTCCAAAGCTGAGAGAAGCCGGTTT  349
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTAGTTTAAGGCTAAGAGCAAAAAAGTCCAAAGCTGAGAGAAGCCGGTTT  350

seq1  GACTCAGTTGGCTTGGAGAAGAGTTTGAGACAGATCAGCTGCATTGAACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGTTGGCTTGGAGAAGAGTTTGAGACAGATCAGCTGCATTGAACC  400

seq1  AGCCAGCCAGAGTTCAGAAAGAGC-TAGAAAGGG-TGAGCTCGTTCAGCA  447
      |||||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  AGCCAGCCAGAGTTCAGAAAGAGCTTAGAAAGGGTTGAGCTCGTTCAGCA  450

seq1  GGAAGCCTGAGAGAGAACGTCTTAAGGTGAATAAAAATTAC-TTTTTCAT  496
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  -GAAGCCTGAGAGAGAACGTCTTAAGGTGAATAAAAATTACTTTTTTCAT  499

seq1  GTAAGTATATATATGCCAGAGCCATTGCAAACAAATATACAGGATATAAA  546
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTAAGTATATATATGCCAGAGCCATTGCAAAC-AATATACAGGATATAAA  548

seq1  GATTTTAAAAGGTTTGAGTTTTGCCTAAATCTGAACAATGCTAACATGAT  596
      |||||||||||||||||||||||||| |||||| ||| ||||||||||||
seq2  GATTTTAAAAGGTTTGAGTTTTGCCT-AATCTG-ACATTGCTAACATGAT  596

seq1  T-GATTGTTTCTTTTTTCCCCTTCATTTTTTAAGTAGTTGCTTAAAACAA  645
      | ||||||||||||||  |||||||||||||||| |||||| ||||||||
seq2  TGGATTGTTTCTTTTT--CCCTTCATTTTTTAAG-AGTTGC-TAAAACAA  642

seq1  GTAAACTTTCTGTCAGACATTGCTACGGGTCACTTCAGCTCTCAGCGA  693
      |||||| ||||||||||||||||||| |||| |||| |||||||||||
seq2  GTAAAC-TTCTGTCAGACATTGCTAC-GGTCCCTTCCGCTCTCAGCGA  688