BAC Information

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BAC

Clone NameB6Ng01-170C09
Chromosome12 (Build37)
Map Location 40,256,275 - 40,450,648
singlet/doubletdoublet
Overlap genenone
Upstream geneDgkb, LOC668824, LOC100043142, Etv1, LOC100043145
Downstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277, Dock4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170C09.bB6Ng01-170C09.g
ACCDH960935DH960936
length1,094492
definitionDH960935|Mus musculus domesticus DNA, BAC clone: B6Ng01-170C09, 5' end.DH960936|Mus musculus domesticus DNA, BAC clone: B6Ng01-170C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,449,538 - 40,450,648)(40,256,275 - 40,256,772)
sequence
gaattcaattgataaaaatgcgtctatttgaaggacctaaagacaactct
gtggaggcattttctaagtagtgaatggtctaagtggtcccagttaactg
ggagtgggagtggtgtcccctctggataggtgttcctggcttgtatgaca
aaatctgttgaaggaacactaaaagcaagccggaatgcaccatttctcca
tggcctctgctacagttcttgccttgaattcttgcttctacttcccttca
tgatgtgctatggtttagacatgtaagctgaataaatttttccctcatca
agttgtcttttcacagcattagagagcaaattaggacatgagctaggtca
aaatcaatctctgttatctgatttcacctcgtttacttctcaaacaagag
ttttttcaacattcactggttttgctgaaatctaaacactttcatgtgat
acatagtaaagactttgaattttgatttattatgtatttttctatattga
ttgtaacctgctgttatttgaccaatgaaattggcctggtcgtggattca
gatactgatgtcattttactaaatgatgtctaactttctagctgtcaccc
cattgtccacacagcttagtgacagatgaataatgtaactggacacacag
aagaacacagtcaaacatcaagtacttttaaattctatctcaactattac
attttgcaatatctaggttatctgtgaaagtacttgtagttttccagtgg
ctctggattatgtacctacctattttccccccctatggctctctcatgca
tagagtctcactgataaattctgaatcatatattgtttactcaagttgag
actgtcaccccatggacagcagatcaaccatttcactaatggggttgtta
cttgtattattagttaaagattgataagaatttggtcacccttgtccatc
agctctgtcttctgctagatgctgtttgtttcccagcagaccagcttaag
taaacctagaagacaatgagtggaggcaggtatcaggaagcaaggcttga
taaagaccttctgctgttactgccaccttctagcaatacttgtc
atatcactatgtgtgctggttacttttatatcaacttgacataacatgac
atagagtcatttgggaagagggtacctcaattgcacaactgcctctatca
gggcccagtccactgggatgaggcagtcttgagttggatgacaaaacagg
ctgatcaaggattcagggacaaagaccatgagctgcacccctccatggct
cttgcttcagttcctgcttgaatttctgccctgatttgccttcatgatgt
agtgtagcctgtaaatataatataaatattataataaagcctttccttcc
cagttgcttttgatcatatttatcactgcaaaaaaattgacaattaaaac
actgttaaaatattaacccagatatgttttgtaggttccttgggcctggc
aaatttccagacttcttgtttggttgggttcgtttgtttgtttgtttgtt
tgttttgttttgttttgttttgttgtggtgtgtggtgtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_40449538_40450648
seq2: B6Ng01-170C09.b_46_1139 (reverse)

seq1  GACAAGGTGATTGCTAGAA-GTTGCAGTAACAGCAGGA-GTCTGTGGTCA  48
      ||||||   |||||||||| || ||||||||||||| | |||| |  |||
seq2  GACAAG--TATTGCTAGAAGGTGGCAGTAACAGCAGAAGGTCT-TTATCA  47

seq1  AGCCTTGCCTCCCTGATACCCTGCCTCCAACTCCATTGTCTTTCTGGTTT  98
      ||||||| || ||||||| ||||||||| ||| ||||||| |||| | ||
seq2  AGCCTTG-CTTCCTGATA-CCTGCCTCC-ACT-CATTGTC-TTCTAGGTT  92

seq1  TACTTAAGCTGGTCTGGCTGGGAAAACAAACAGCATCCTTAGCAGAAGAC  148
      ||||||||||||||| |||||| ||||||||||||||  |||||||||||
seq2  TACTTAAGCTGGTCT-GCTGGG-AAACAAACAGCATC--TAGCAGAAGAC  138

seq1  AGAGCCTGATGGGACAGGAAGTAAAACCAAATTCTTATCAATCTTTTAAC  198
      |||| |||||||   |||  |    |||||||||||||||||| ||||||
seq2  AGAG-CTGATGGACAAGGGTG----ACCAAATTCTTATCAATC-TTTAAC  182

seq1  TAATAATAACAAGTAACAACCCCATTAGTGAAATGGTTGATCTGCTGTCC  248
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAT-ACAAGTAACAACCCCATTAGTGAAATGGTTGATCTGCTGTCC  231

seq1  ATGGGGTGACAGTCTCAACTTGAGTAAACAATATATGATTCAGAATTTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTGACAGTCTCAACTTGAGTAAACAATATATGATTCAGAATTTAT  281

seq1  CAGTGAGACTCTATGCATGAGAGAGCCATAGGGGGGGAAAATAGGTAGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGACTCTATGCATGAGAGAGCCATAGGGGGGGAAAATAGGTAGGT  331

seq1  ACATAATCCAGAGCCACTGGAAAACTACAAGTACTTTCACAGATAACCTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATCCAGAGCCACTGGAAAACTACAAGTACTTTCACAGATAACCTA  381

seq1  GATATTGCAAAATGTAATAGTTGAGATAGAATTTAAAAGTACTTGATGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGCAAAATGTAATAGTTGAGATAGAATTTAAAAGTACTTGATGTT  431

seq1  TGACTGTGTTCTTCTGTGTGTCCAGTTACATTATTCATCTGTCACTAAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTGTTCTTCTGTGTGTCCAGTTACATTATTCATCTGTCACTAAGC  481

seq1  TGTGTGGACAATGGGGTGACAGCTAGAAAGTTAGACATCATTTAGTAAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGACAATGGGGTGACAGCTAGAAAGTTAGACATCATTTAGTAAAA  531

seq1  TGACATCAGTATCTGAATCCACGACCAGGCCAATTTCATTGGTCAAATAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCAGTATCTGAATCCACGACCAGGCCAATTTCATTGGTCAAATAA  581

seq1  CAGCAGGTTACAATCAATATAGAAAAATACATAATAAATCAAAATTCAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGTTACAATCAATATAGAAAAATACATAATAAATCAAAATTCAAA  631

seq1  GTCTTTACTATGTATCACATGAAAGTGTTTAGATTTCAGCAAAACCAGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTACTATGTATCACATGAAAGTGTTTAGATTTCAGCAAAACCAGTG  681

seq1  AATGTTGAAAAAACTCTTGTTTGAGAAGTAAACGAGGTGAAATCAGATAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGAAAAAACTCTTGTTTGAGAAGTAAACGAGGTGAAATCAGATAA  731

seq1  CAGAGATTGATTTTGACCTAGCTCATGTCCTAATTTGCTCTCTAATGCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTGATTTTGACCTAGCTCATGTCCTAATTTGCTCTCTAATGCTG  781

seq1  TGAAAAGACAACTTGATGAGGGAAAAATTTATTCAGCTTACATGTCTAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGACAACTTGATGAGGGAAAAATTTATTCAGCTTACATGTCTAAA  831

seq1  CCATAGCACATCATGAAGGGAAGTAGAAGCAAGAATTCAAGGCAAGAACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCACATCATGAAGGGAAGTAGAAGCAAGAATTCAAGGCAAGAACT  881

seq1  GTAGCAGAGGCCATGGAGAAATGGTGCATTCCGGCTTGCTTTTAGTGTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGAGGCCATGGAGAAATGGTGCATTCCGGCTTGCTTTTAGTGTTC  931

seq1  CTTCAACAGATTTTGTCATACAAGCCAGGAACACCTATCCAGAGGGGACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACAGATTTTGTCATACAAGCCAGGAACACCTATCCAGAGGGGACA  981

seq1  CCACTCCCACTCCCAGTTAACTGGGACCACTTAGACCATTCACTACTTAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCCACTCCCAGTTAACTGGGACCACTTAGACCATTCACTACTTAG  1031

seq1  AAAATGCCTCCACAGAGTTGTCTTTAGGTCCATCGAATAGACGCATTTTT  1098
      ||||||||||||||||||||||||||||||| || |||||||||||||||
seq2  AAAATGCCTCCACAGAGTTGTCTTTAGGTCCTTCAAATAGACGCATTTTT  1081

seq1  ATCAATTGAATTC  1111
      |||||||||||||
seq2  ATCAATTGAATTC  1094

seq1: chr12_40256275_40256772
seq2: B6Ng01-170C09.g_69_566

seq1  GAATTCATATCACTATGTGTGCTGGTTACTTTTATATCAACTTGACATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCACTATGTGTGCTGGTTACTTTTATATCAACTTGACATAA  50

seq1  CATGACATAGAGTCATTTGGGAAGAGGGTACCTCAATTGCACAACTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACATAGAGTCATTTGGGAAGAGGGTACCTCAATTGCACAACTGCCT  100

seq1  CTATCAGGGCCCAGTCCACTGGGATGAGGCAGTCTTGAGTTGGATGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGGGCCCAGTCCACTGGGATGAGGCAGTCTTGAGTTGGATGACAA  150

seq1  AACAGGCTGATCAAGGATTCAGGGACAAAGACCATGAGCTGCACCCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCTGATCAAGGATTCAGGGACAAAGACCATGAGCTGCACCCCTCC  200

seq1  ATGGCTCTTGCTTCAGTTCCTGCTTGAATTTCTGCCCTGATTTGCCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCTTGCTTCAGTTCCTGCTTGAATTTCTGCCCTGATTTGCCTTCA  250

seq1  TGATGTAGTGTAGCCTGTAAATATAATATAAATATTATAATAAAGCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTAGTGTAGCCTGTAAATATAATATAAATATTATAATAAAGCCTTT  300

seq1  CCTTCCCAGTTGCTTTTGATCATATTTATCACTGCAAAAAAATTGACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCAGTTGCTTTTGATCATATTTATCACTGCAAAAAAATTGACAAT  350

seq1  TAAAACACTGTTAAAATATTAACCCAGATATGTTTTGTAGGTTCCTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACACTGTTAAAATATTAACCCAGATATGTTTTGTAGGTTCCTTGGG  400

seq1  CCTGGCAAATTTCCAGACTTCTTGTTTGGTTGGGTTCGTTTGTTTGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAAATTTCCAGACTTCTTGTTTGGTTGGGTTCGTTTGTTTGTTTG  450

seq1  TTTGTTTGTTTTGTTTTGTTTTGTTTTGTTGTGGTGTGTGGTGTGGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTTGTTTTGTTTTGTTTTGTTGTGGTGTGTGGTGTGGTG  498