BAC Information

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BAC

Clone NameB6Ng01-170E20
Chromosome12 (Build37)7 (Build37)
Map Location 73,105,052 - 73,105,20448,766,871 - 48,767,636
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene3110056K07Rik, Arid4a, Timm9, LOC100041035, 2700049A03Rik, LOC666162, Dact1, LOC100041190, Daam1, LOC666213
Downstream geneLOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik, Rtn1, Lrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170E20.bB6Ng01-170E20.g
ACCDH961049DH961050
length9981,079
definitionDH961049|Mus musculus domesticus DNA, BAC clone: B6Ng01-170E20, 5' end.DH961050|Mus musculus domesticus DNA, BAC clone: B6Ng01-170E20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(73,105,052 - 73,105,204)(48,766,871 - 48,767,636)
sequence
gaattctcaactgaggagccacgtatggcagaggagcacgtaaaaaaatg
ttcaacatccttagtcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagaatggctaagatcaaaaactcaggtgacagcagat
gctggtgaggatgtggagaaagaggaacactcctccattgctggtgggat
tataaactggtacaaccactctggaaatcagtctggtggttcctcagaaa
attggacatagtactactacctgaggacacagctataccactcctgggca
tatacccagaagatgctcaaacatgtaataaggacacaagctccactatg
ttcataccagccatatttataatagccaaaaactggaaagaacccagatg
tccctcaacagaggaatggatacagaaaatgtggtacatttacacaatgg
agtactactcaactattaaaaataatgacttcatgaaattcacagggaaa
ttgatggaacttgaaattatcatcctgagtgaggtaactcagtcacaaaa
aaacagacatggtatacacttactgataagtggatattagccatctgata
tacagttgctattgtggatgctgggaagtgcttgttgaagggagtctgat
agggctgtctcctgagaggctctgccagagcctgacaaatacagaggtgg
atgtgtgcagccaaccattggactgagctcagggtcccagatggaggagt
tggagaagggactgaaggagctgagggggtttgtagccccatggaaaggt
gcaacagtgtcaactggctagatatccccactcccccccccccccccgag
ctcccagggactggaccaccaaccaaagagtacacatggagggacccata
gctccagcctcacatgtggcagagcatgggcttgttggacatcagtggaa
gagagggccttgggtctgaggctgttcgaagcccagtgtaggggaatg
gaattcaagtgattcacatatgcatggtgaattctctttttgaccagagt
caattttcttagctttagctgataatttttatggatgatttaaatctgat
ttaccttgtaaggtatgacatatattgcgtagctcttaagtatttaatcc
aattatgggccacagacaattaaaatctcccagtaatttttgaaagccat
taagagtttgtaacttatctctcctaatgtttgtttcctatttatgtctt
ctccctaaatctatctcttatcctagatatttgagagaatcttatctttg
cattttcaaaggagcaatttgtaatcccacacaaggattttttttttttc
aatgaacatttttttcctaagaatcagcaagcagccaggcagtgatggtg
catgcctttaatctaagcacttgggaggcagaggcaggcagatttctgag
ttcgaggccagcctggtctacagagtgagttccaggactccaggactata
cagagaaaccctgtctcgaaaaaaaaacaaaacaaacaaaagaacaaaaa
agaatcagcaagtaaaatagtatccatctaatgacaaagtataaattgaa
gaattgtttattaattatttctaatggctgttatgcaaagtattgatgca
aagtgggggtgtttaacattccctgtggctagaccttttactggtatctt
cccattggcgtttcactgttaaatgtgggcaaagttaaagcaaacttttc
ttacaggggattgggaaaaaagcaatctcttaaaaaaatcactgtaataa
accatgccttaggtaacaaatgaatcttgttctcgtgcctaaggttgtat
ctctagcctaagctggatctcagagccaaacctgcatttcagctttatgt
ttgtacatcaatattgggagaattttgcgatcccatttgaggtaattaag
acatggggacatcaatatattttaaactgtcgcccttctgctggggtagt
ctctcagctagctactaacttaaaaagacttcccaacgtttatctttcca
gggattctcactacgaaaccctactccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_73105052_73105204
seq2: B6Ng01-170E20.b_895_1045 (reverse)

seq1  CATTCCTCTACACTGGGGCATCGAGTCTTCACAGGACCAAGGACCTCTCC  50
      |||||| ||||||| |||| ||||     | |||  |||||| |||||| 
seq2  CATTCCCCTACACT-GGGCTTCGAACAGCCTCAGACCCAAGGCCCTCTCT  49

seq1  TCTCACTGATGCCCAACAGGGCCATTCTCTGCTACATATTCAGCTGGAGC  100
      || |||||||| |||||| | |||| |||||| |||| |   ||||||||
seq2  TC-CACTGATGTCCAACAAGCCCATGCTCTGCCACATGTGAGGCTGGAGC  98

seq1  CATGGGTCCCTCCATGTGTATTCTTTGGTTGGTGGTTTAGTCCCTGGGAG  150
       ||||||||||||||||||| |||||||||||||||  ||||||||||||
seq2  TATGGGTCCCTCCATGTGTACTCTTTGGTTGGTGGTCCAGTCCCTGGGAG  148

seq1  CTC  153
      |||
seq2  CTC  151

seq1: chr7_48766871_48767636
seq2: B6Ng01-170E20.g_388_1143

seq1  ATCCCACACAAGGATTTTTTTTTTTTCAATGAACATTTTTTTCCTAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACACAAGGATTTTTTTTTTTTCAATGAACATTTTTTTCCTAAGAA  50

seq1  TCAGCAAGCAGCCAGGCAGTGATGGTGCATGCCTTTAATCTAAGCACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAGCAGCCAGGCAGTGATGGTGCATGCCTTTAATCTAAGCACTTG  100

seq1  GGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAG  150

seq1  AGTGAGTTCCAGGACTCCAGGACTATACAGAGAAACCCTGTCTCGAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTCCAGGACTCCAGGACTATACAGAGAAACCCTGTCTCGAAAAA  200

seq1  AAAACAAAACAAACAAAAGAACAAAAAAGAATCAGCAAGTAAAATAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAAACAAAAGAACAAAAAAGAATCAGCAAGTAAAATAGTAT  250

seq1  CCATCTAATGACAAAGTATAAATTGAAGAATTGTTTATTAATTATTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTAATGACAAAGTATAAATTGAAGAATTGTTTATTAATTATTTCTA  300

seq1  ATGGCTGTTATGCAAAGTATTGATGCAAAGTGGGGGTGTTTAACATTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGTTATGCAAAGTATTGATGCAAAGTGGGGGTGTTTAACATTCCC  350

seq1  TGTGGCTAGACCTTTTACTGGTATCTTCCCATTGGCGTTTCACTGTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTAGACCTTTTACTGGTATCTTCCCATTGGCGTTTCACTGTTAAA  400

seq1  TGTGGGCAAAGTTAAAGCAAACTTTTCTTACAGGGGATTGGGAAAAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCAAAGTTAAAGCAAACTTTTCTTACAGGGGATTGGGAAAAAAGC  450

seq1  AATCTCTTAAAAAAATCACTGTAATAAACCATGCCTTAGGTAACAAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTTAAAAAAATCACTGTAATAAACCATGCCTTAGGTAACAAATGA  500

seq1  ATCTTGTTCTCGTGCCTAAGGTTGTATCTCTAGCCTAAGCTGGATCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTTCTCGTGCCTAAGGTTGTATCTCTAGCCTAAGCTGGATCTCAG  550

seq1  AGCCAAACCTGCATTTCAGGCTTTATGTTTGTACATCAAATATTGGGAGA  600
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  AGCCAAACCTGCATTTCA-GCTTTATGTTTGTACATC-AATATTGGGAGA  598

seq1  ATTTTGCGATCCCATTTGAGGGTAAATTAAGACATGGGGACATCAATATA  650
      |||||||||||||||||||||   ||||||||||||||||||||||||||
seq2  ATTTTGCGATCCCATTTGAGG--TAATTAAGACATGGGGACATCAATATA  646

seq1  TTTTAAAACTGTCGCCCTTCTGCTGGGGTAGTCTCTCAGCTAGCTACTAA  700
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTT-AAACTGTCGCCCTTCTGCTGGGGTAGTCTCTCAGCTAGCTACTAA  695

seq1  CTTAAAATGACTTCTCAAACGTTTTATCTTTCCATGTGATTCTCACTACC  750
      ||||||| |||||| | |||| |||||||||||| | |||||||||||| 
seq2  CTTAAAAAGACTTC-CCAACG-TTTATCTTTCCA-GGGATTCTCACTAC-  741

seq1  TAACACCCTACTCCAT  766
        | ||||||||||||
seq2  -GAAACCCTACTCCAT  756