BAC Information

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BAC

Clone NameB6Ng01-170G05
Chromosome12 (Build37)3 (Build37)
Map Location 45,673,487 - 45,674,59064,431,954 - 64,432,087
singlet/doubletsingletsinglet
Overlap geneNrcam
Upstream geneLOC100039059, ENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8
Downstream geneEG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170G05.bB6Ng01-170G05.g
ACCDH961111DH961112
length1,098835
definitionDH961111|Mus musculus domesticus DNA, BAC clone: B6Ng01-170G05, 5' end.DH961112|Mus musculus domesticus DNA, BAC clone: B6Ng01-170G05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,673,487 - 45,674,590)(64,431,954 - 64,432,087)
sequence
gaattctcactttaaaaaaaaaacaacgtgataaaacgatgtttcctctg
tatttcacaggtttcccacctttttagaaccttctgatgactggacagta
tatgtgaaataaggcagacagattttttttaagaattaaaatgtaaccat
ttgcacctagtttaacaataatgagaacactaataaatcagattatactt
taagactctatagtacataactgagtcatccttatgatcattaattatat
ttatttaaaaaaacccacagaaacattatttgctagagatatttttattc
atatagccaaaaaaaccccacgatcacttacatcactacttcggtttgac
actgacccctagaggattctttatgtactgcactgtactccctttttttc
cccccaatagtgaccagactctgcatatgctaatttatcttggaaaactg
cctttaaattcctaagaaaccgtcaagaaaatgtaatatacaaaaaaaac
tcacattttgaccaaagttaggcaacacctttttatctttctaaaatctg
tgcctaaaatgtaaaagtacttttgatgagatggtagtgtgacttaataa
actaacctgagacctgcagtacagggtcattatagctttggaagaatccc
tcactagcccatgagctcagtgatactacaaaaagagtaataataaaagc
ctccctagggtgaggattcaattaacccaacaagaacatataaacaatgg
gcagcaaaatttatacaagtaaaattctggaatatttattatggttattt
tttttattctggaaataagagaaccaagtgaatcgcattctctttcactc
atttcttttatcgtcctccaacacaataagaaagcacagctttattgtgt
ggacctaagttttgttattttctgtgggcttctgtctcacttgctagaac
cagtttcccctgtttactaatattcatgtaaaacgcacagatatttatct
gaaatcagcatttcaacttaaaaagcgtatgggtggctcaccaccctttt
tgcactcctcacagttcataggatgagtgagaagggagaggcccgacc
gaattccttgataaaatatataattattgtttaaattctctgtcctggga
ttcacctaggtaattctcattagagaatacttctacagggctaggaaatt
tggtaggagatgtgatgtcttgaccattcatattgatttttttatgtttg
acatagacatgtagatttcttttgttggttatggttcagatatgagaatc
tgaccagccttagattagaccagtgcaagagcctcatgactggaacatgg
gcagttatagctggtaaatgactctaaatccttgttttgtctcctcagat
gaagggatgaaatgagagccctacctaagctttatgaatactcggtttgg
gctgagcccagagcattttttcctctgttctaactatccctaggccttag
tcctggaagcttctagcctccataaaatctttttgtttgtttgtttgttt
ttttttattaggtatttatttcatttacatttccaatgctatcccaaaag
tcccccacccgcttccccacccactcccctacccacccactcccctaccc
acccactcccacttcttggccctggcgttaccctgtactgaggcagataa
agtttgcatgaccaatgggcctctctttccactgatggccaactaggcca
tcttctgatacatatgcagctagagacatgagctctggggggtactgggt
agttcatattgttgttctacctatagggttgcagatccctttaattcctt
ggttactttctctagctcctccattgggggccctgtgatccatccaatag
ctgactgtaagcatccacttctgtgtttgctaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_45673487_45674590
seq2: B6Ng01-170G05.b_46_1143

seq1  GAATTCTCACTTTAAAAAAAAAACAACGTGATAAAACGATGTTTCCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTTTAAAAAAAAAACAACGTGATAAAACGATGTTTCCTCTG  50

seq1  TATTTCACAGGTTTCCCACCTTTTTAGAACCTTCTGATGACTGGACAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCACAGGTTTCCCACCTTTTTAGAACCTTCTGATGACTGGACAGTA  100

seq1  TATGTGAAATAAGGCAGACAGATTTTTTTTAAGAATTAAAATGTAACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAAATAAGGCAGACAGATTTTTTTTAAGAATTAAAATGTAACCAT  150

seq1  TTGCACCTAGTTTAACAATAATGAGAACACTAATAAATCAGATTATACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCTAGTTTAACAATAATGAGAACACTAATAAATCAGATTATACTT  200

seq1  TAAGACTCTATAGTACATAACTGAGTCATCCTTATGATCATTAATTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTCTATAGTACATAACTGAGTCATCCTTATGATCATTAATTATAT  250

seq1  TTATTTAAAAAAACCCACAGAAACATTATTTGCTAGAGATATTTTTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAAAAAACCCACAGAAACATTATTTGCTAGAGATATTTTTATTC  300

seq1  ATATAGCCAAAAAAACCCCACGATCACTTACATCACTACTTCGGTTTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCCAAAAAAACCCCACGATCACTTACATCACTACTTCGGTTTGAC  350

seq1  ACTGACCCCTAGAGGATTCTTTATGTACTGCACTGTACTCCCTTTTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCCCTAGAGGATTCTTTATGTACTGCACTGTACTCCCTTTTTTTC  400

seq1  CCCCCAATAGTGACCAGACTCTGCATATGCTAATTTATCTTGGAAAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAATAGTGACCAGACTCTGCATATGCTAATTTATCTTGGAAAACTG  450

seq1  CCTTTAAATTCCTAAGAAACCGTCAAGAAAATGTAATATACAAAAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAATTCCTAAGAAACCGTCAAGAAAATGTAATATACAAAAAAAAC  500

seq1  TCACATTTTGACCAAAGTTAGGCAACACCTTTTTATCTTTCTAAAATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTTGACCAAAGTTAGGCAACACCTTTTTATCTTTCTAAAATCTG  550

seq1  TGCCTAAAATGTAAAAGTACTTTTGATGAGATGGTAGTGTGACTTAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAAAATGTAAAAGTACTTTTGATGAGATGGTAGTGTGACTTAATAA  600

seq1  ACTAACCTGAGACCTGCAGTACAGGGTCATTATAGCTTTGGAAGAATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCTGAGACCTGCAGTACAGGGTCATTATAGCTTTGGAAGAATCCC  650

seq1  TCACTAGCCCATGAGCTCAGTGATACTACAAAAAGAGTAATAATAAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGCCCATGAGCTCAGTGATACTACAAAAAGAGTAATAATAAAAGC  700

seq1  CTCCCTAGGGTGAGGATTCAATTAACCCAACAAGAACATATAAACAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTAGGGTGAGGATTCAATTAACCCAACAAGAACATATAAACAATGG  750

seq1  GCAGCAAAATTTATACAAGTAAAATTCTGGAATATTTATTATGGTTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAAATTTATACAAGTAAAATTCTGGAATATTTATTATGGTTATTT  800

seq1  TTTTTATTCTGGAAATAAGAGAACCAAGTGAATCGCATTCTCTTTCACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCTGGAAATAAGAGAACCAAGTGAATCGCATTCTCTTTCACTC  850

seq1  ATTTCTTTTATCGTCCTCCAACACAATAAGAAAGCACAGCTTTATTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTATCGTCCTCCAACACAATAAGAAAGCACAGCTTTATTGTGT  900

seq1  GGACCTAAGTTTTGTTATTTTCTGTGGGCTTCTGTCTCACTTGCTAAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGACCTAAGTTTTGTTATTTTCTGTGGGCTTCTGTCTCACTTGCT-AGAA  949

seq1  CCAGTATCCATTAGTTTTACTAATATTCATGTAAAACGCACCAAGATATT  1000
      ||||| |||  |   ||||||||||||||||||||||||||  |||||||
seq2  CCAGTTTCCCCT--GTTTACTAATATTCATGTAAAACGCAC--AGATATT  995

seq1  TATCTGAAAATCAGCATTTCAACTTAAAAAAGCGTTATGTGT-GCTCA-C  1048
      |||||| |||||||||||||||||| |||||||| |||| || ||||| |
seq2  TATCTG-AAATCAGCATTTCAACTT-AAAAAGCG-TATGGGTGGCTCACC  1042

seq1  ACCCTTTGTGCACTCCTACAAGTCCATAGGATGAGTGAGAAGGGAGAGGC  1098
      ||||||| |||||||||   ||| ||||||||||||||||||||||||||
seq2  ACCCTTTTTGCACTCCTCACAGTTCATAGGATGAGTGAGAAGGGAGAGGC  1092

seq1  CCGACC  1104
      ||||||
seq2  CCGACC  1098

seq1: chr3_64431954_64432087
seq2: B6Ng01-170G05.g_518_728 (reverse)

seq1  TATCAGAAGATGGCCTAGT-------------------------------  19
      |||||||||||||||||||                               
seq2  TATCAGAAGATGGCCTAGTTGGCCATCAGTGGAAAGAGAGGCCCATTGGT  50

seq1  -------------------------CA-------GCCAGGGCCAAGAAGT  37
                               ||       ||||||||||||||||
seq2  CATGCAAACTTTATCTGCCTCAGTACAGGGTAACGCCAGGGCCAAGAAGT  100

seq1  GGGAGTGGGTGGGTGGGGGAGTGGGTG----GGGGA--GGGTGG------  75
      |||||||||||||| ||||||||||||    |||||  ||||||      
seq2  GGGAGTGGGTGGGTAGGGGAGTGGGTGGGTAGGGGAGTGGGTGGGGAAGC  150

seq1  ----GGGAGACTTTTGGGATAGCATTGGAAACGTAAATTAAATAAATACC  121
          ||| ||||||||||||||||||||||| |||||| |||||||||||
seq2  GGGTGGGGGACTTTTGGGATAGCATTGGAAATGTAAATGAAATAAATACC  200

seq1  TAATTTAAAAAAA  134
      |||  ||||||||
seq2  TAA--TAAAAAAA  211