BAC Information

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BAC

Clone NameB6Ng01-170L06
Chromosome12 (Build37)
Map Location 28,856,903 - 28,936,067
singlet/doubletdoublet
Overlap genenone
Upstream geneSox11, LOC100043009, LOC669327
Downstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170L06.bB6Ng01-170L06.g
ACCDH961349DH961350
length1,0311,142
definitionDH961349|Mus musculus domesticus DNA, BAC clone: B6Ng01-170L06, 5' end.DH961350|Mus musculus domesticus DNA, BAC clone: B6Ng01-170L06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,935,032 - 28,936,067)(28,856,903 - 28,858,072)
sequence
gaattcaataaatggcataaacagaaaataatccaaaatcctgtgcgttt
aattccatttcctttcaatacccagactgctatttgagaaccagtgtact
gcaagctaagaactatgaactgacttcaaatttaaatttactacctgctc
taatggaggcagtgtttctcagagtcctagagaaataatgagagatgaac
ctggtctgactttgcttccatggtaaacatttccagaagtgttaactgga
agcttaatatatgaagctaattactgcatgaactggggcccttcaggaat
ggaactgtaggttgcattctgcccactctctgttccaggaagggttatcc
aagcaacaggatctaaaagtagcttctttggcagagaggataactgtagt
gtggtcccaaggtgtcttgctaattattcctggtgtcctgtcccagctcg
tgttgacctggataacatatggccttgccagtcacagtaggaagatttgg
ctgtggaagacacagggctgaaatagcttcaccacaggaaagatagccag
gggatgcttctcctgtcccagagtttctgctctgccttcctagtgcccac
attatttcctggcactggggatggatgtgagacccagggcagagtaatta
aaatgcactatggatctctatgtgggaatgggtagattgcttctcaatgt
ccgatggctaccaagagggagaggaaatacaaagagaggaaattaattca
cacactaatgaattttttaattagaatttaaaatccaaactttcagcagt
gcattttcctgtagggaatggtatagaatgatccaggtaattaggggcag
aggaggtattaaagtaaacttattggacttaatgtaatagaaatgtttga
aggtcaatggtggtgatccagcccaggatatgcagtcactaggagaacaa
caggcttgggcaatacttccttttccataaaagattaaaaaagcaaacct
gaatttaaaataagattacatgataaatgcc
gaattcctggtattcttactgcaacccaaagcaaaaggaaaagagcctca
gaaaacaggcatttgacaacaagcaggcaaacataaggcccatgtgcttt
cctgcatcacccaaagcagctctgcagcagactggactgacatgaaacat
actcaaaccataattagaaaattagaaaataaaaataggtttttagaact
tgtgttcaccatggctgggtatccaggaagtctgacatttaaaatgtcag
gtgaacgggaagcaacggtgactgggatgaacaagttctgtctgtatgat
tgtgcactggaaatttgctgctccaccctcatctcttctcctagcttcca
tgaaggtctcacacttgtttctcccgactcccaccttgctagaaaggcac
acttgttatgataaagggcatagtggtctccagctgtcctctcggggacc
cttaatgatgttcttgttcccaatgcccagataagtcttgtgagtctcag
tgtcagagcttcacacgaaaggctctgtgtgaagccactgtttttaatca
aagcaaatgtgttctttctcagcctcccatacctcctatccatttctatc
cctcctgccttagtggagggatgaaaatctgggtgtcctacagcacagca
tcatgatacgaggtctcagattccagaagatgattgacatttgggaaaga
gaacctcttaagggatgggaatttatccttttctttccaaagacagttct
gaggggcactgctcactgaatcccgatctcaatgtctctctggtgtccag
ggtgcaaatgtcaacctgcactgtacattaaaactgcgcaggaaagctga
gaaacaagcaagtttctttcacagatgacagtcttgaatatctgattctt
gacatgtcccataagcaagttctacatggaaccttcacaggtacatgtag
ctattacaggtgtgtcattgggaaactctgcctcaagatgttcaaactgc
tatggtactgtcagatagataccaggtttaaggtgaccctcatataaatg
tcactgcactggttctgtgagaaagcatatgcagagcagttgttgcttat
aaggacttgcagaagcccagcctggcagtgtcatgctcatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_28935032_28936067
seq2: B6Ng01-170L06.b_47_1077 (reverse)

seq1  GGCATTTTATCATGTATTCTTTATTTTAAATTCAGGGTTTTGGTTTTTTT  50
      |||| ||||||||||| || ||||||||||||||||   || | ||||||
seq2  GGCA-TTTATCATGTAATC-TTATTTTAAATTCAGG---TTTGCTTTTTT  45

seq1  TATCTTTTTATGGGAAAAGGAGTA-TGCCC-AGCCTGTGTGTTCTCCTAG  98
       ||| |||||||| ||| | |||| ||||| ||||||| |||||||||||
seq2  AATC-TTTTATGGAAAAGGAAGTATTGCCCAAGCCTGT-TGTTCTCCTAG  93

seq1  TGACTGCATATCCTGGGCTGGATCACCACCATTGACCTTCAAACATTTTC  148
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGACTGCATATCCTGGGCTGGATCACCACCATTGACCTTCAAACA-TTTC  142

seq1  TATTACATTAAGTCC-ATAAGTTTACTTTAATACCTCCTCTGCCCCTAAT  197
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATTACATTAAGTCCAATAAGTTTACTTTAATACCTCCTCTGCCCCTAAT  192

seq1  TACCTGGATCATTCTATACCATTCCCTACAGGAAAATGCACTGCTG-AAG  246
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TACCTGGATCATTCTATACCATTCCCTACAGGAAAATGCACTGCTGAAAG  242

seq1  TTTGGATTTTTAAATTCTAATTAAAAAATTCATTAGTGTGTGAATTAATT  296
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGA-TTTTAAATTCTAATTAAAAAATTCATTAGTGTGTGAATTAATT  291

seq1  TCCTCTCTTTGTATTTCCTCTCCCTCTTGGTAGCCATCGGACATTGAGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTTTGTATTTCCTCTCCCTCTTGGTAGCCATCGGACATTGAGAA  341

seq1  GCAATCTACCCATTCCCACATAGAGATCCATAGTGCATTTTAATTACTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTACCCATTCCCACATAGAGATCCATAGTGCATTTTAATTACTCT  391

seq1  GCCCTGGGTCTCACATCCATCCCCAGTGCCAGGAAATAATGTGGGCACTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGGTCTCACATCCATCCCCAGTGCCAGGAAATAATGTGGGCACTA  441

seq1  GGAAGGCAGAGCAGAAACTCTGGGACAGGAGAAGCATCCCCTGGCTATCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAGAGCAGAAACTCTGGGACAGGAGAAGCATCCCCTGGCTATCT  491

seq1  TTCCTGTGGTGAAGCTATTTCAGCCCTGTGTCTTCCACAGCCAAATCTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGGTGAAGCTATTTCAGCCCTGTGTCTTCCACAGCCAAATCTTC  541

seq1  CTACTGTGACTGGCAAGGCCATATGTTATCCAGGTCAACACGAGCTGGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGACTGGCAAGGCCATATGTTATCCAGGTCAACACGAGCTGGGA  591

seq1  CAGGACACCAGGAATAATTAGCAAGACACCTTGGGACCACACTACAGTTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACACCAGGAATAATTAGCAAGACACCTTGGGACCACACTACAGTTA  641

seq1  TCCTCTCTGCCAAAGAAGCTACTTTTAGATCCTGTTGCTTGGATAACCCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTGCCAAAGAAGCTACTTTTAGATCCTGTTGCTTGGATAACCCT  691

seq1  TCCTGGAACAGAGAGTGGGCAGAATGCAACCTACAGTTCCATTCCTGAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACAGAGAGTGGGCAGAATGCAACCTACAGTTCCATTCCTGAAG  741

seq1  GGCCCCAGTTCATGCAGTAATTAGCTTCATATATTAAGCTTCCAGTTAAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCAGTTCATGCAGTAATTAGCTTCATATATTAAGCTTCCAGTTAAC  791

seq1  ACTTCTGGAAATGTTTACCATGGAAGCAAAGTCAGACCAGGTTCATCTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGGAAATGTTTACCATGGAAGCAAAGTCAGACCAGGTTCATCTCT  841

seq1  CATTATTTCTCTAGGACTCTGAGAAACACTGCCTCCATTAGAGCAGGTAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTCTCTAGGACTCTGAGAAACACTGCCTCCATTAGAGCAGGTAG  891

seq1  TAAATTTAAATTTGAAGTCAGTTCATAGTTCTTAGCTTGCAGTACACTGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTAAATTTGAAGTCAGTTCATAGTTCTTAGCTTGCAGTACACTGG  941

seq1  TTCTCAAATAGCAGTCTGGGTATTGAAAGGAAATGGAATTAAACGCACAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAATAGCAGTCTGGGTATTGAAAGGAAATGGAATTAAACGCACAG  991

seq1  GATTTTGGATTATTTTCTGTTTATGCCATTTATTGAATTC  1036
      ||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGGATTATTTTCTGTTTATGCCATTTATTGAATTC  1031

seq1: chr12_28856903_28858072
seq2: B6Ng01-170L06.g_68_1209

seq1  GAATTCCTGGTATTCTTACTGCAACCCAAAGCAAAAGGAAAAGAGCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTATTCTTACTGCAACCCAAAGCAAAAGGAAAAGAGCCTCA  50

seq1  GAAAACAGGCATTTGACAACAAGCAGGCAAACATAAGGCCCATGTGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGGCATTTGACAACAAGCAGGCAAACATAAGGCCCATGTGCTTT  100

seq1  CCTGCATCACCCAAAGCAGCTCTGCAGCAGACTGGACTGACATGAAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATCACCCAAAGCAGCTCTGCAGCAGACTGGACTGACATGAAACAT  150

seq1  ACTCAAACCATAATTAGAAAATTAGAAAATAAAAATAGGTTTTTAGAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAACCATAATTAGAAAATTAGAAAATAAAAATAGGTTTTTAGAACT  200

seq1  TGTGTTCACCATGGCTGGGTATCCAGGAAGTCTGACATTTAAAATGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCACCATGGCTGGGTATCCAGGAAGTCTGACATTTAAAATGTCAG  250

seq1  GTGAACGGGAAGCAACGGTGACTGGGATGAACAAGTTCTGTCTGTATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACGGGAAGCAACGGTGACTGGGATGAACAAGTTCTGTCTGTATGAT  300

seq1  TGTGCACTGGAAATTTGCTGCTCCACCCTCATCTCTTCTCCTAGCTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACTGGAAATTTGCTGCTCCACCCTCATCTCTTCTCCTAGCTTCCA  350

seq1  TGAAGGTCTCACACTTGTTTCTCCCGACTCCCACCTTGCTAGAAAGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTCTCACACTTGTTTCTCCCGACTCCCACCTTGCTAGAAAGGCAC  400

seq1  ACTTGTTATGATAAAGGGCATAGTGGTCTCCAGCTGTCCTCTCGGGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTATGATAAAGGGCATAGTGGTCTCCAGCTGTCCTCTCGGGGACC  450

seq1  CTTAATGATGTTCTTGTTCCCAATGCCCAGATAAGTCTTGTGAGTCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGATGTTCTTGTTCCCAATGCCCAGATAAGTCTTGTGAGTCTCAG  500

seq1  TGTCAGAGCTTCACACGAAAGGCTCTGTGTGAAGCCACTGTTTTTAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAGCTTCACACGAAAGGCTCTGTGTGAAGCCACTGTTTTTAATCA  550

seq1  AAGCAAATGTGTTCTTTCTCAGCCTCCCATACCTCCTATCCATTTCTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATGTGTTCTTTCTCAGCCTCCCATACCTCCTATCCATTTCTATC  600

seq1  CCTCCTGCCTTAGTGGAGGGATGAAAATCTGGGTGTCCTACAGCACAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGCCTTAGTGGAGGGATGAAAATCTGGGTGTCCTACAGCACAGCA  650

seq1  TCATGATACGAGGTCTCAGATTCCAGAAGATGATTGACATTTGGGAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATACGAGGTCTCAGATTCCAGAAGATGATTGACATTTGGGAAAGA  700

seq1  GAACCTCTTAAGGGATGGGAATTTATCCTTTTCTTTCCAAAGACAGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCTTAAGGGATGGGAATTTATCCTTTTCTTTCCAAAGACAGTTCT  750

seq1  GAGGGGCACTGCTCACTGAATCCCGATCTCAATGTCTCTCTGGTGTCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCACTGCTCACTGAATCCCGATCTCAATGTCTCTCTGGTGTCCAG  800

seq1  GGTGCAAATGTCAACCTGCACTGTACATTAAAACTGCGCAGGAAAGCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAAATGTCAACCTGCACTGTACATTAAAACTGCGCAGGAAAGCTGA  850

seq1  GAAACAAGCAAGTTTCCTTCACAGATGACAGTCTTGAATATCTGATTCCT  900
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  GAAACAAGCAAGTTTCTTTCACAGATGACAGTCTTGAATATCTGATT-CT  899

seq1  TGACATGTCCCATAAGCAAGTCCTACATTGAACCTTCACAGGTAACAGTG  950
      ||||||||||||||||||||| |||||| |||||||||||||| ||| ||
seq2  TGACATGTCCCATAAGCAAGTTCTACATGGAACCTTCACAGGT-ACA-TG  947

seq1  TAGCTATTACAGGTTGTGTCCATTGGGAAACCTCTGCCTCAAGGAATAGT  1000
      ||||||||||||| ||||| |||||||||| ||||||||||||    |  
seq2  TAGCTATTACAGG-TGTGT-CATTGGGAAA-CTCTGCCTCAAG----ATG  990

seq1  TTCAAAACTGCTATGGTAACTGTCAAGATAGATACCAGGTTTAAGGTGAC  1050
      ||| ||||||||||||| |||||| |||||||||||||||||||||||||
seq2  TTC-AAACTGCTATGGT-ACTGTC-AGATAGATACCAGGTTTAAGGTGAC  1037

seq1  CCTCATATAAAATGTCACTGCACTGGTTCTGTGGAAGGAGAGCAATATGC  1100
      |||||||| ||||||||||||||||||||||||    || ||| ||||||
seq2  CCTCATAT-AAATGTCACTGCACTGGTTCTGTG---AGAAAGC-ATATGC  1082

seq1  AGAGCATGTTGGTTTGCTTTATAAAGGACATGGCCAGAAGCTCAGCCTGG  1150
      |||||| ||||  |||| |||| |||||| ||  ||||||| ||||||||
seq2  AGAGCA-GTTG--TTGC-TTAT-AAGGACTTG--CAGAAGCCCAGCCTGG  1125

seq1  CAGTGTTCTATGCCTCATGC  1170
      ||||||   ||| |||||||
seq2  CAGTGT--CATG-CTCATGC  1142