BAC Information

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BAC

Clone NameB6Ng01-171K24
Chromosome12 (Build37)
Map Location 81,354,955 - 81,501,115
singlet/doubletdoublet
Overlap geneActn1, Wdr22
Upstream geneZfyve26, Rad51l1, LOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1
Downstream geneExdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171K24.bB6Ng01-171K24.g
ACCGA000503GA000504
length1,089855
definitionB6Ng01-171K24.b B6Ng01-171K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,500,020 - 81,501,115)(81,354,955 - 81,355,805)
sequence
gaattcagacttttcaagacttccacaaactgagccaatttatgattttt
tttttttttttttagaaactttaaaatcctatattgtcgggtggaaggga
tcacttgtaggaattataaaatgtctatttttttcctttgtaggaaatga
tgagcaagttatcctccatgatgttgaaaggtaaatagattgttggtgtg
tgacgatgactgaccattttttacatgaacagtggcaaatatctttttag
acatagattttaggttctgagggaactaatatggaaccaatattagtttt
ctgaagcaaacaaaccaattactataatagtttcagttttatttaaagaa
agggaagatttgcaaagttgacatacaattagaaataataagagacgcct
ttaatcccagtacttggtaggcagaagcaggcagatttctgagttcgagg
ccagcctggtctacagagtgagttccaggacagccagggctacacagaga
aatcctgtctcagaaaaacccaaaaaaaaaagagggagaaaacagttttt
cctctttatatttatatgttatacataattacataataaaaattaatagt
taataataacaaatatttattgagtttttactgtcatgtgccagacattg
ttctaagggatttttgtgttccccacttaaccattatgaccatttagtga
gggatattgttgataaccatgacaagagggaacaaaggcccagagctctt
aggtaacttaaaggtcaggtaatgctaggactttgcaccgggtcttgtta
gctcagagctgtgctgttaatccacatgctagtctcctggaggccctcta
cctctgctgctttaaacctcccctttgttttttggaaatctagtaccacc
cctccaatctccatacaactgataaatgaaacaaaaactcagctactggt
caattttaaatacgtttagtgtgaaacttagaaatttatacaagttaata
ctttaaatatacaattatatatttatgcagacattagaatactcatgttt
ttcactgaacattgccaataaattagtagcatcttgttg
gaattctttccaggagccacacagcagaacatccagggccaggtcgtatc
tcaggctggggctgccccgtctcagctctagacccataaaaagtacatct
tgtatgacaagctcttatgcccattttccagtctgtggccatcagccagg
tacccagtgccaggtctttttagagagcaactcccaaagccatcctcaga
gaagagagattccttgtgagtacccttcgggagcctgtcaacctcttcac
cccgaaaagccacctctaatgtccctcaccttggaaactctggttgtcgg
gccacaagccaggccttctcacacctgcctgagctgacacttgatggcat
cagtggcctgacagcccaactcttccctgccccccttcttcaggctttgt
ccattgctgaaccagtaaggggcacctgctcctagcctacccatgtggag
cagggattgaagaggaaggagctccattgagttctagggtgaggtaagct
tagggaaagttgctgggaggtgtgagggcagggcaaattcctgggctaga
tggcccttaaaggacattctcaggctggagagatggctcaggggttgaga
gtactgactgctcttccagaggtcctgagttcaattccctgcaaccacat
ggtggctcacaaccaactgtaataggatctgatgccctgttctggtgtgt
ctgaagacagctatggtgtactcatataaataaaataatttttttaaaaa
aggacatctactctccgtgtgttccttgcacttatgatatgatgacacaa
gtttttaagtacttttctttctggttaggtttttgttgatttggtggggt
ttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_81500020_81501115
seq2: B6Ng01-171K24.b_47_1135 (reverse)

seq1  CAACAAGATGCTAAATTAATATAATGGGCAATGTTCAAGTGAAAAACATT  50
      ||||||||||||  | |||| | || |||||||||| ||||||||||| |
seq2  CAACAAGATGCT--ACTAAT-TTATTGGCAATGTTC-AGTGAAAAACA-T  45

seq1  AAGTATCTAAAATGTCTGCATAAATATATA--TGTATATTTAAAAGTATT  98
       ||||| |  ||||||||||||||||||||  ||||||||| ||||||||
seq2  GAGTAT-TCTAATGTCTGCATAAATATATAATTGTATATTT-AAAGTATT  93

seq1  -ACTTGTATAAATTTCCTAATTTTCACACTAAACGTATTTAAAAATGACC  147
       |||||||||||||| |||| ||||||||||||||||||||||| ||| |
seq2  AACTTGTATAAATTT-CTAAGTTTCACACTAAACGTATTTAAAATTGA-C  141

seq1  CAGTAGCTGAGTTTTTTGTTTTCATTTATCAGTTGTATGGAGATTTGA-G  196
      ||||||||||||||||   |||||||||||||||||||||||||| || |
seq2  CAGTAGCTGAGTTTTT--GTTTCATTTATCAGTTGTATGGAGATTGGAGG  189

seq1  GGTGGTACTAGATTTCC-AAAAACAAAGGGGAGGTTTTAAAGCAGCAGAG  245
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  GGTGGTACTAGATTTCCAAAAAACAAAGGGGAGG-TTTAAAGCAGCAGAG  238

seq1  GTAGAGGGCCTCCCAGGAGACTAGCATGTGGATTAACAGCACAGCTCTGA  295
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGGCCT-CCAGGAGACTAGCATGTGGATTAACAGCACAGCTCTGA  287

seq1  GCTAACAAGACCCGGTGCAAAGTCCTAGCATTACCTGACC-TTAAGTTAC  344
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCTAACAAGACCCGGTGCAAAGTCCTAGCATTACCTGACCTTTAAGTTAC  337

seq1  CTAAGAGCTCTGGGCCTTTGTTCCCTCTTGTCATGGTTATCAACAATATC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGCTCTGGGCCTTTGTTCCCTCTTGTCATGGTTATCAACAATATC  387

seq1  CCTCACTAAATGGTCATAATGGTTAAGTGGGGAACACAAAAATCCCTTAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTAAATGGTCATAATGGTTAAGTGGGGAACACAAAAATCCCTTAG  437

seq1  AACAATGTCTGGCACATGACAGTAAAAACTCAATAAATATTTGTTATTAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGTCTGGCACATGACAGTAAAAACTCAATAAATATTTGTTATTAT  487

seq1  TAACTATTAATTTTTATTATGTAATTATGTATAACATATAAATATAAAGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATTAATTTTTATTATGTAATTATGTATAACATATAAATATAAAGA  537

seq1  GGAAAAACTGTTTTCTCCCTCTTTTTTTTTTGGGTTTTTCTGAGACAGGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAACTGTTTTCTCCCTCTTTTTTTTTTGGGTTTTTCTGAGACAGGA  587

seq1  TTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCT  637

seq1  GGCCTCGAACTCAGAAATCTGCCTGCTTCTGCCTACCAAGTACTGGGATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCGAACTCAGAAATCTGCCTGCTTCTGCCTACCAAGTACTGGGATT  687

seq1  AAAGGCGTCTCTTATTATTTCTAATTGTATGTCAACTTTGCAAATCTTCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCGTCTCTTATTATTTCTAATTGTATGTCAACTTTGCAAATCTTCC  737

seq1  CTTTCTTTAAATAAAACTGAAACTATTATAGTAATTGGTTTGTTTGCTTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTAAATAAAACTGAAACTATTATAGTAATTGGTTTGTTTGCTTC  787

seq1  AGAAAACTAATATTGGTTCCATATTAGTTCCCTCAGAACCTAAAATCTAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTAATATTGGTTCCATATTAGTTCCCTCAGAACCTAAAATCTAT  837

seq1  GTCTAAAAAGATATTTGCCACTGTTCATGTAAAAAATGGTCAGTCATCGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAAAAGATATTTGCCACTGTTCATGTAAAAAATGGTCAGTCATCGT  887

seq1  CACACACCAACAATCTATTTACCTTTCAACATCATGGAGGATAACTTGCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCAACAATCTATTTACCTTTCAACATCATGGAGGATAACTTGCT  937

seq1  CATCATTTCCTACAAAGGAAAAAAATAGACATTTTATAATTCCTACAAGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTCCTACAAAGGAAAAAAATAGACATTTTATAATTCCTACAAGT  987

seq1  GATCCCTTCCACCCGACAATATAGGATTTTAAAGTTTCTAAAAAAAAAAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTTCCACCCGACAATATAGGATTTTAAAGTTTCTAAAAAAAAAAA  1037

seq1  AAAAAAATCATAAATTGGCTCAGTTTGTGGAAGTCTTGAAAAGTCTGAAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCATAAATTGGCTCAGTTTGTGGAAGTCTTGAAAAGTCTGAAT  1087

seq1  TC  1096
      ||
seq2  TC  1089

seq1: chr12_81354955_81355805
seq2: B6Ng01-171K24.g_66_920

seq1  GAATTCTTTCCAGGAGCCACACAGCAGAACATCCAGGGCCAGGTCGTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCAGGAGCCACACAGCAGAACATCCAGGGCCAGGTCGTATC  50

seq1  TCAGGCTGGGGCTGCCCCGTCTCAGCTCTAGACCCATAAAAAGTACATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTGGGGCTGCCCCGTCTCAGCTCTAGACCCATAAAAAGTACATCT  100

seq1  TGTATGACAAGCTCTTATGCCCATTTTCCAGTCTGTGGCCATCAGCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGACAAGCTCTTATGCCCATTTTCCAGTCTGTGGCCATCAGCCAGG  150

seq1  TACCCAGTGCCAGGTCTTTTTAGAGAGCAACTCCCAAAGCCATCCTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGTGCCAGGTCTTTTTAGAGAGCAACTCCCAAAGCCATCCTCAGA  200

seq1  GAAGAGAGATTCCTTGTGAGTACCCTTCGGGAGCCTGTCAACCTCTTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGATTCCTTGTGAGTACCCTTCGGGAGCCTGTCAACCTCTTCAC  250

seq1  CCCGAAAAGCCACCTCTAATGTCCCTCACCTTGGAAACTCTGGTTGTCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAAAAGCCACCTCTAATGTCCCTCACCTTGGAAACTCTGGTTGTCGG  300

seq1  GCCACAAGCCAGGCCTTCTCACACCTGCCTGAGCTGACACTTGATGGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAAGCCAGGCCTTCTCACACCTGCCTGAGCTGACACTTGATGGCAT  350

seq1  CAGTGGCCTGACAGCCCAACTCTTCCCTGCCCCCCTTCTTCAGGCTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCCTGACAGCCCAACTCTTCCCTGCCCCCCTTCTTCAGGCTTTGT  400

seq1  CCATTGCTGAACCAGTAAGGGGCACCTGCTCCTAGCCTACCCATGTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCTGAACCAGTAAGGGGCACCTGCTCCTAGCCTACCCATGTGGAG  450

seq1  CAGGGATTGAAGAGGAAGGAGCTCCATTGAGTTCTAGGGTGAGGTAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATTGAAGAGGAAGGAGCTCCATTGAGTTCTAGGGTGAGGTAAGCT  500

seq1  TAGGGAAAGTTGCTGGGAGGTGTGAGGGCAGGGCAAATTCCTGGGCTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAAGTTGCTGGGAGGTGTGAGGGCAGGGCAAATTCCTGGGCTAGA  550

seq1  TGGCCCTTAAAGGACATTCTCAGGCTGGAGAGATGGCTCAGGGGTTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTTAAAGGACATTCTCAGGCTGGAGAGATGGCTCAGGGGTTGAGA  600

seq1  GTACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCTGCAACCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCTGCAACCACAT  650

seq1  GGTGGCTCACAACCAACTGTAATAGGATCTGATGCCCTGTTCTGGTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCACAACCAACTGTAATAGGATCTGATGCCCTGTTCTGGTGTGT  700

seq1  CTGAAGACAGCTATGGTGTACTCATATAAATAAAATAA-TTTTTTAAAAA  749
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTGAAGACAGCTATGGTGTACTCATATAAATAAAATAATTTTTTTAAAAA  750

seq1  AGGACATCTACTCTCCGTGTGTTTCTTGCAC-TATGATATGATGACACAA  798
      ||||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  AGGACATCTACTCTCCGTGTGTTCCTTGCACTTATGATATGATGACACAA  800

seq1  G-TTTTAAGTAC-TTTCTTTCTGGTTAGGTTTTTGTTGATTTGGTGGGGT  846
      | |||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAAGTACTTTTCTTTCTGGTTAGGTTTTTGTTGATTTGGTGGGGT  850

seq1  TTTTT  851
      |||||
seq2  TTTTT  855