BAC Information

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BAC

Clone NameB6Ng01-172G01
Chromosome12 (Build37)
Map Location 114,092,420 - 114,312,258
singlet/doubletdoublet
Overlap geneGpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2
Upstream genePpp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4
Downstream geneTex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172G01.bB6Ng01-172G01.g
ACCGA001008GA001009
length1,078512
definitionB6Ng01-172G01.b B6Ng01-172G01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,092,420 - 114,093,480)(114,311,741 - 114,312,258)
sequence
gaattcactctgtagaccaggctggcaatgaactcagaaatccacctgac
tctgcctcccaagtgctgggattaaaggcgtgcaccaccatgctcggctc
caggcctcctttttaatctctatggaacacacatagcacagaacgttctc
tccgagtccttcattcccctgcatgcagctgaccgtcactaactaactgg
ctgctgtgtggagtggagccagttcccacctctagaatcttctcagcctg
cagaccaaagctcttctagaaatacacacacacacacacacacatacaca
cacacatacatatacatacacatatacatgtacaaacacacacatacaca
ctcatacaaacacatatacacacatacacatacatacacatacacacata
tacacacatacacacatatgcacacatgcacacacacatatacacacatg
cacatacacacacacacacacacacacacacacacacacacacacacaca
cacactttcctcccttgcattctccctgcctctgtagagcagcctcaccc
aaacggattcatcatcggtgcagatttagtctactgagcatagcatcttc
cgggttcatccacatcatagggtgtgtcagaacatgtcttctttttgaga
caggctagcatcccatcaagacactccatgcacaggaacactccccagtg
aacacagagacactctgacacttgtcacgtgtgcatggaacctaggctgc
ttgccacatgaacaatatgagcattggtgtccctgacttctgtccctgct
gtctcctttttgggtacacctaaaaagtgagcttgctgggtcacgtggcc
actgtgttttactctgaggaaagcctgtgctacttttcaagtgtctgctc
tgctttgcagccctatctgcagagatcagagctcaggcatagccagccag
cttctgctttatgttttttcctttttaacagtgtgttgtgaggcaccctt
ccctcccacaatctgggtgccctggggtcatccgcctcagaaggccatcc
tattatcacatctgaataagagaaagtg
atttgagatggaggctagaggaagaagtgaggcttgcaggataaggctag
ggcaagccattgcttcagggctgagcctcccgcctccccacgcctcccca
cccccacctcccagcactggtacctttacagtgatactgagctgcgtact
cagagggtggtggcaggaaccaacttgaaggtagaggcagggcccccaac
tgacagcaatgagcaatggcaactggtgttgcttgacagggacctctaag
actggcaggctctgagggtgatgcctcagagcttcggatgcaaacacact
ctgcggttcgtaccactgcactgcctgtcaggggggctttggtgtcatcc
ttcaaagggacaaagtgcttctccatgacttctcattacagctccatgag
gtaggcaaggaaaatggaccatctctctaaccactgggggagtgaggcac
agggaggaaggactgctgtctaggtctgcacctagcactgccatggtggg
ggttggggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_114092420_114093480
seq2: B6Ng01-172G01.b_43_1120

seq1  GAATTCACTCTGTAGACCAGGCTGGCAATGAACTCAGAAATCCACCTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCAATGAACTCAGAAATCCACCTGAC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCATGCTCGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCATGCTCGGCTC  100

seq1  CAGGCCTCCTTTTTAATCTCTATGGAACACACATAGCACAGAACGTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTCCTTTTTAATCTCTATGGAACACACATAGCACAGAACGTTCTC  150

seq1  TCCGAGTCCTTCATTCCCCTGCATGCAGCTGACCGTCACTAACTAACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGTCCTTCATTCCCCTGCATGCAGCTGACCGTCACTAACTAACTGG  200

seq1  CTGCTGTGTGGAGTGGAGCCAGTTCCCACCTCTAGAATCTTCTCAGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGTGGAGTGGAGCCAGTTCCCACCTCTAGAATCTTCTCAGCCTG  250

seq1  CAGACCAAAGCTCTTCTAGAAATACACACACACACACACACACATACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAAAGCTCTTCTAGAAATACACACACACACACACACACATACACA  300

seq1  CACACATACATATACATACACATATACATGTACAAACACACACATACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACATATACATACACATATACATGTACAAACACACACATACACA  350

seq1  CTCATACAAACACATATACACACATACACATACATACACATACACACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACAAACACATATACACACATACACATACATACACATACACACATA  400

seq1  TACACACATACACACATATGCACACATGCACACACACATATACACACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACATACACACATATGCACACATGCACACACACATATACACACATG  450

seq1  CACAT----ACACACACACACACACACACACACACACACACACACACACA  496
      |||||    |||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACACACACACACACACACACACACACACACACACACACACACA  500

seq1  CACACTTTCCTCCCTTGCATTCTCCCTGCCTCTGTAGAGCAGCCTCACCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTTCCTCCCTTGCATTCTCCCTGCCTCTGTAGAGCAGCCTCACCC  550

seq1  AAACGGATTCATCATCGGTGCAGATTTAGTCTACTGAGCATAGCATCTTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGATTCATCATCGGTGCAGATTTAGTCTACTGAGCATAGCATCTTC  600

seq1  CGGGTTCATCCACATCATAGGGTGTGTCAGAACATGTCTTCTTTTTGAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTCATCCACATCATAGGGTGTGTCAGAACATGTCTTCTTTTTGAGA  650

seq1  CAGGCTAGCATCCCATCAAGACACTCCATGCACAGGAACACTCCCCAGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAGCATCCCATCAAGACACTCCATGCACAGGAACACTCCCCAGTG  700

seq1  AACACAGAGACACTCTGACACTTGTCACGTGTGCATGGAACCTAGGCTGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGAGACACTCTGACACTTGTCACGTGTGCATGGAACCTAGGCTGC  750

seq1  TTGCCACATGAACAATATGAGCATTGGTGTCCCTGACTTCTGTCCCTGCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACATGAACAATATGAGCATTGGTGTCCCTGACTTCTGTCCCTGCT  800

seq1  GTCTCCTTTTTGGGTACACCT-AAAAGTGAGCTTGCTGGGTCACGTGGCC  845
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTCTCCTTTTTGGGTACACCTAAAAAGTGAGCTTGCTGGGTCACGTGGCC  850

seq1  ACTGTG-TTTACTCTGAGG-AAGCCTGTGCTAC-TTTCAAGTGTCTGCTC  892
      |||||| |||||||||||| ||||||||||||| ||||||||||||||||
seq2  ACTGTGTTTTACTCTGAGGAAAGCCTGTGCTACTTTTCAAGTGTCTGCTC  900

seq1  TGCTTTGCAGCCCTATCTGCAGAGATCAGAGCTCAGGCATAGCCAGCCAG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGCAGCCCTATCTGCAGAGATCAGAGCTCAGGCATAGCCAGCCAG  950

seq1  CTTCTGCTTTTATGTTTTTTCCTTTTTAACAGTGTG-TGTGAGGCACC--  989
      ||||||| |||||||||||||||||||||||||||| |||||||||||  
seq2  CTTCTGC-TTTATGTTTTTTCCTTTTTAACAGTGTGTTGTGAGGCACCCT  999

seq1  TTCCTCCCACAATCTGGGTGCCCT-GGGTCATC--GCTCAGA--GGCAT-  1033
      | |||||||||||||||||||||| ||||||||   ||||||  | ||| 
seq2  TCCCTCCCACAATCTGGGTGCCCTGGGGTCATCCGCCTCAGAAGGCCATC  1049

seq1  CTATTACCACATCTGAAT-AGAGAAAGTG  1061
      |||||| ||||||||||| ||||||||||
seq2  CTATTATCACATCTGAATAAGAGAAAGTG  1078

seq1: chr12_114311741_114312258
seq2: B6Ng01-172G01.g_64_581 (reverse)

seq1  TTCCCCCCAACCCCCACCATGGCAGTGCTAGGTGCAGACCTAGACAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCCAACCCCCACCATGGCAGTGCTAGGTGCAGACCTAGACAGCAG  50

seq1  TCCTTCCTCCCTGTGCCTCACTCCCCCAGTGGTTAGAGAGATGGTCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTCCCTGTGCCTCACTCCCCCAGTGGTTAGAGAGATGGTCCATT  100

seq1  TTCCTTGCCTACCTCATGGAGCTGTAATGAGAAGTCATGGAGAAGCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGCCTACCTCATGGAGCTGTAATGAGAAGTCATGGAGAAGCACTT  150

seq1  TGTCCCTTTGAAGGATGACACCAAAGCCCCCCTGACAGGCAGTGCAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTTTGAAGGATGACACCAAAGCCCCCCTGACAGGCAGTGCAGTGG  200

seq1  TACGAACCGCAGAGTGTGTTTGCATCCGAAGCTCTGAGGCATCACCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAACCGCAGAGTGTGTTTGCATCCGAAGCTCTGAGGCATCACCCTCA  250

seq1  GAGCCTGCCAGTCTTAGAGGTCCCTGTCAAGCAACACCAGTTGCCATTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGCCAGTCTTAGAGGTCCCTGTCAAGCAACACCAGTTGCCATTGC  300

seq1  TCATTGCTGTCAGTTGGGGGCCCTGCCTCTACCTTCAAGTTGGTTCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCTGTCAGTTGGGGGCCCTGCCTCTACCTTCAAGTTGGTTCCTGC  350

seq1  CACCACCCTCTGAGTACGCAGCTCAGTATCACTGTAAAGGTACCAGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCCTCTGAGTACGCAGCTCAGTATCACTGTAAAGGTACCAGTGCT  400

seq1  GGGAGGTGGGGGTGGGGAGGCGTGGGGAGGCGGGAGGCTCAGCCCTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGGGGGTGGGGAGGCGTGGGGAGGCGGGAGGCTCAGCCCTGAAG  450

seq1  CAATGGCTTGCCCTAGCCTTATCCTGCAAGCCTCACTTCTTCCTCTAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCTTGCCCTAGCCTTATCCTGCAAGCCTCACTTCTTCCTCTAGCC  500

seq1  TCCATCTCAAATGAATTC  518
      ||||||||||||||||||
seq2  TCCATCTCAAATGAATTC  518