BAC Information

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BAC

Clone NameB6Ng01-172H01
Chromosome12 (Build37)
Map Location 113,529,356 - 113,661,453
singlet/doubletdoublet
Overlap geneA730018C14Rik
Upstream geneCdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a
Downstream geneA530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172H01.bB6Ng01-172H01.g
ACCGA001053GA001054
length832464
definitionB6Ng01-172H01.b B6Ng01-172H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,660,625 - 113,661,453)(113,529,356 - 113,529,825)
sequence
gaattcaacgcaggagctggtgataggttgggagaagggagggccatctt
gggtgatgaggctcggagcaagagatgacttctgctccaagcttggctag
aggagttacaaccacggacagagctcctcaggcctgccaggggtcaagga
gaaaagggctttgagtgagagctgcagccaccaagggtcctcactgctgc
cagaggtaatactgggaagtctgggggcgcaggggagggacagggaggag
gagtccctgccttgcctggattccttcccattggctgaggggtgtgtgag
gacctgcagagctcagtggggaccctagggagacttttccaagcacagac
aggggccgggcacagggttccatgcctgtcaatcatccctgagtagttta
tgattttctcaatactcattttccctcattttccatttttattatttgaa
acagatgatatattgatttctgtataattatatgacacactctcagccta
ccatgctttcttgttaattctaattttaaatacaatatctggatgtgtaa
gaaaccaagcctttgaggtccgtgtgcagctcagtagcaatgtgcttgcc
cggagcgtctcaggctctgagtttgacgattccgaacagtacaaaacaat
aaagaagaaagacctactagtttcctggcttccaaatttcatgttttgtt
ttctcgtctattcgtgcctgtcagaaccctgaacaccatgttaaatcgtg
tccgtagtgtccctgactaattctgattttgcactgtcgtagctccgtgt
ttttgtgagtgggggttttgtttctgcccact
atcaggctctcgaactttaaagttcagggagggaaaaaaaaaggatttca
aattagtggaagctttttacaggggacgcttgtcaaggataatctttaat
tgcaaataaaaagatatgggaggtggcgctggggatagggacatcttgaa
ggccagccgtgtggaggtcaacctgcccgcacctgcttcaacaggagaag
ggtggagatgtggggcagtcctcagtccccactcccacacttcctttctt
ctgtatggctaacccgcagcttctacaggtcccagcccaccactgcccag
accactgctccatccttaggaacagagggctggagcatgggaggcaagtc
ttgtaggtaagaggtgagaactggggaactccccagattcccctgagaaa
gaacggagggtaggttcccgtctctgaggatgttagctgcggccgggatg
gaagggggtgagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_113660625_113661453
seq2: B6Ng01-172H01.b_45_876 (reverse)

seq1  ACTGGGCAGAAACAAAA-CCCCACTCAC-AAAACACGGAGCTACGACAGT  48
      | ||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  AGTGGGCAGAAACAAAACCCCCACTCACAAAAACACGGAGCTACGACAGT  50

seq1  GC-AAATCAGAATTAGTCAGGGACACTACGGACACGATTTAACATGGTGT  97
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATCAGAATTAGTCAGGGACACTACGGACACGATTTAACATGGTGT  100

seq1  TCAGGGTTCTGACAGGCACGAATAGACGAGAAAACAAAACATGAAATTTG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTTCTGACAGGCACGAATAGACGAGAAAACAAAACATGAAATTTG  150

seq1  GAAGCCAGGAAACTAGTAGGTCTTTCTTCTTTATTGTTTTGTACTGTTCG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGGAAACTAGTAGGTCTTTCTTCTTTATTGTTTTGTACTGTTCG  200

seq1  GAATCGTCAAACTCAGAGCCTGAGACGCTCCGGGCAAGCACATTGCTACT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGTCAAACTCAGAGCCTGAGACGCTCCGGGCAAGCACATTGCTACT  250

seq1  GAGCTGCACACGGACCTCAAAGGCTTGGTTTCTTACACATCCAGATATTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCACACGGACCTCAAAGGCTTGGTTTCTTACACATCCAGATATTG  300

seq1  TATTTAAAATTAGAATTAACAAGAAAGCATGGTAGGCTGAGAGTGTGTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAATTAGAATTAACAAGAAAGCATGGTAGGCTGAGAGTGTGTCA  350

seq1  TATAATTATACAGAAATCAATATATCATCTGTTTCAAATAATAAAAATGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTATACAGAAATCAATATATCATCTGTTTCAAATAATAAAAATGG  400

seq1  AAAATGAGGGAAAATGAGTATTGAGAAAATCATAAACTACTCAGGGATGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGGGAAAATGAGTATTGAGAAAATCATAAACTACTCAGGGATGA  450

seq1  TTGACAGGCATGGAACCCTGTGCCCGGCCCCTGTCTGTGCTTGGAAAAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGGCATGGAACCCTGTGCCCGGCCCCTGTCTGTGCTTGGAAAAGT  500

seq1  CTCCCTAGGGTCCCCACTGAGCTCTGCAGGTCCTCACACACCCCTCAGCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTAGGGTCCCCACTGAGCTCTGCAGGTCCTCACACACCCCTCAGCC  550

seq1  AATGGGAAGGAATCCAGGCAAGGCAGGGACTCCTCCTCCCTGTCCCTCCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAAGGAATCCAGGCAAGGCAGGGACTCCTCCTCCCTGTCCCTCCC  600

seq1  CTGCGCCCCCAGACTTCCCAGTATTACCTCTGGCAGCAGTGAGGACCCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCCCCCAGACTTCCCAGTATTACCTCTGGCAGCAGTGAGGACCCTT  650

seq1  GGTGGCTGCAGCTCTCACTCAAAGCCCTTTTCTCCTTGACCCCTGGCAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTGCAGCTCTCACTCAAAGCCCTTTTCTCCTTGACCCCTGGCAGG  700

seq1  CCTGAGGAGCTCTGTCCGTGGTTGTAACTCCTCTAGCCAAGCTTGGAGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGAGCTCTGTCCGTGGTTGTAACTCCTCTAGCCAAGCTTGGAGCA  750

seq1  GAAGTCATCTCTTGCTCCGAGCCTCATCACCCAAGATGGCCCTCCCTTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCATCTCTTGCTCCGAGCCTCATCACCCAAGATGGCCCTCCCTTCT  800

seq1  CCCAACCTATCACCAGCTCCTGCGTTGAATTC  829
      ||||||||||||||||||||||||||||||||
seq2  CCCAACCTATCACCAGCTCCTGCGTTGAATTC  832

seq1: chr12_113529356_113529825
seq2: B6Ng01-172H01.g_67_536

seq1  GAATTCATCAGGCTCTCGAACTTTAAAGTTCAGGGAGGGAAAAAAAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGGCTCTCGAACTTTAAAGTTCAGGGAGGGAAAAAAAAAGG  50

seq1  ATTTCAAATTAGTGGAAGCTTTTTACAGGGGACGCTTGTCAAGGATAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAATTAGTGGAAGCTTTTTACAGGGGACGCTTGTCAAGGATAATC  100

seq1  TTTAATTGCAAATAAAAAGATATGGGAGGTGGCGCTGGGGATAGGGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGCAAATAAAAAGATATGGGAGGTGGCGCTGGGGATAGGGACAT  150

seq1  CTTGAAGGCCAGCCGTGTGGAGGTCAACCTGCCCGCACCTGCTTCAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGCCAGCCGTGTGGAGGTCAACCTGCCCGCACCTGCTTCAACAG  200

seq1  GAGAAGGGTGGAGATGTGGGGCAGTCCTCAGTCCCCACTCCCACACTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGTGGAGATGTGGGGCAGTCCTCAGTCCCCACTCCCACACTTCC  250

seq1  TTTCTTCTGTATGGCTAACCCGCAGCTTCTACAGGTCCCAGCCCACCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTGTATGGCTAACCCGCAGCTTCTACAGGTCCCAGCCCACCACT  300

seq1  GCCCAGACCACTGCTCCATCCTTAGGAACAGAGGGCTGGAGCATGGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGACCACTGCTCCATCCTTAGGAACAGAGGGCTGGAGCATGGGAGG  350

seq1  CAAGTCTTGTAGGTAAGAGGTGAGAACTGGGGAACTCCCCAGATTCCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTTGTAGGTAAGAGGTGAGAACTGGGGAACTCCCCAGATTCCCCT  400

seq1  GAGAAAGAACGGAGGGTAGGTTCCCGTCTCTGAGGATGTTAGCTGCGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAACGGAGGGTAGGTTCCCGTCTCTGAGGATGTTAGCTGCGGCC  450

seq1  GGGATGGAAGGGGGTGAGGA  470
      ||||||||||||||||||||
seq2  GGGATGGAAGGGGGTGAGGA  470