BAC Information

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BAC

Clone NameB6Ng01-173H23
Chromosome12 (Build37)
Map Location 42,134,775 - 42,261,289
singlet/doubletdoublet
Overlap geneLrrn3
Upstream geneZfp277, Dock4, LOC638487, LOC100043157, LOC100043162
Downstream geneImmp2l, EG638533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173H23.bB6Ng01-173H23.g
ACCGA001828GA001829
length1,1101,154
definitionB6Ng01-173H23.b B6Ng01-173H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,134,775 - 42,135,882)(42,260,153 - 42,261,289)
sequence
gaattcttacaccatggccttgaattttgatctaagccttttttcaacct
cttgtttgtagcctccatgtttctgctcattgtccagagatcccgtgcct
tctgtgatcctctggagtaactggagaggcaagttctctttccatattgg
ccttagagtcttaccaatccatctgtctgctgtacatccacattttctga
ttagaagctttctttgatttcttggcttagttattgtgtctcctgaggga
ataaaacttacatacactatcaaagaaaacaaaaacctacttactttttc
cttttttttttcttgtttttttttctgtttccaaatgctaatctgtaaca
tgttccaaaatacaaactagcttataaatgtgttttaacaacaatatttg
agttagaataaatcatttaaaaacatgtgcacttacatttcctttatgaa
cccagattagcccacttttcaaagctaatacagaaagttccagcaggaga
aagtatcacaaacaaaaggggaccacagaagagtagaagcactagaccta
ctgatgaacagagggaaacatcgctgtgcctgtgcagtgtttggtagtgc
gctaagagaatgcgttcttatggttgaattctattgtttaaaaaacatgc
tggtgtacagaccattagtacctttgaacatgtctttgcttgggagttaa
catgaggttattaaggtaagccctaatccagtatgactgtctccttataa
aaatgaagatttagacaatgagatgcagacacagggagagcatcatctga
agattacggttatgctacttcaatgaaaggaacatcaaagattgccaaaa
aatctactagatggagaaaggtgagcaacagattgtccttggaacaaccc
acagaagaaagcagcttcccgagactccttgggtttcagatttccagctg
ccagagagatacaaacatttctgggttttaaagcactctcggtttgtaat
tgaatgtgggattgcctcaataatcaatgcagaattatcagtagctgtga
tttagactcggttaaagcataggtaactttgccttttagtgtcaagtttt
agagaaccat

gaattctacaggagttcagttgtgacagaagagtgagatggatatatata
aaaccactacaacctagtgaagcttagtgtccagggcctcccattctcac
aggtgcctacaatgctggccacacatagcccaggaaggcatagccagtag
gcatttccagtagtgtctacagaaagtccaaaatgaaagattctacatct
ctaaggcccctataatattcagatctttacttccatcctagaaaaatatt
caaccccaatctgctcttaaaagaagttattaaaattgtttaagctgcag
gatttgtaatttggttaattttcactaaaaaagaaaaaaaatgaaaaaaa
aaagccgagtgattctagtaaaggaatggatatataattaactgtagata
ctggcaaatgttgtgaggtgcttatctcagtataacgagtataaaaataa
gtaaatctcgcataaatgcgttaaagattctagttgatattaacatgggt
cattcaggaacactaacagcttcatcagcaggaagatatcagatgtggaa
aattaccagtctgaaaaacttcagttaatagtcggtgtggcaaaaatctg
atacatacttagatggggtagctattaattgaatcttttataattcagca
gtaatggagaaccgttctttttaatgagattcttgcctctgtacattttc
tcttagggcttactgatagagaccttcagagtgaggctcaggatcaacag
ctgggagtgcctcttaagtccttcacaaggcaagacaggctcctagatga
cagggactatagagaatgatggcacaatggaaaggcatactgaagaaagc
ctaaacccttcagataattgacttgccacctaaagaggaacccagaacat
gtatctgaaccaagaaaacaagagttatatgttacaagtgttgtaacgct
aatttaataagcaggggttatgaagggttagtacaacagtttctacctca
gacaagaaaagaaaacgttgctgagttcaatgtcagactgactagcagca
agagcacggtgctcaatgctgagcagttactttaccaagccaggcagcat
cgaaggaaggaaaattgatagcttgggcgcaatgtccctgcccaccatac
ctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_42134775_42135882
seq2: B6Ng01-173H23.b_40_1149

seq1  GAATTCTTACACCATGGCCTTGAATTTTGATCTAAGCCTTTTTTCAACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACACCATGGCCTTGAATTTTGATCTAAGCCTTTTTTCAACCT  50

seq1  CTTGTTTGTAGCCTCCATGTTTCTGCTCATTGTCCAGAGATCCCGTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTGTAGCCTCCATGTTTCTGCTCATTGTCCAGAGATCCCGTGCCT  100

seq1  TCTGTGATCCTCTGGAGTAACTGGAGAGGCAAGTTCTCTTTCCATATTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATCCTCTGGAGTAACTGGAGAGGCAAGTTCTCTTTCCATATTGG  150

seq1  CCTTAGAGTCTTACCAATCCATCTGTCTGCTGTACATCCACATTTTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAGTCTTACCAATCCATCTGTCTGCTGTACATCCACATTTTCTGA  200

seq1  TTAGAAGCTTTCTTTGATTTCTTGGCTTAGTTATTGTGTCTCCTGAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGCTTTCTTTGATTTCTTGGCTTAGTTATTGTGTCTCCTGAGGGA  250

seq1  ATAAAACTTACATACACTATCAAAGAAAACAAAAACCTACTTACTTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTTACATACACTATCAAAGAAAACAAAAACCTACTTACTTTTTC  300

seq1  CTTTTTTTTTTCTTGTTTTTTTTTCTGTTTCCAAATGCTAATCTGTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTCTTGTTTTTTTTTCTGTTTCCAAATGCTAATCTGTAACA  350

seq1  TGTTCCAAAATACAAACTAGCTTATAAATGTGTTTTAACAACAATATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAAAATACAAACTAGCTTATAAATGTGTTTTAACAACAATATTTG  400

seq1  AGTTAGAATAAATCATTTAAAAACATGTGCACTTACATTTCCTTTATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAATAAATCATTTAAAAACATGTGCACTTACATTTCCTTTATGAA  450

seq1  CCCAGATTAGCCCACTTTTCAAAGCTAATACAGAAAGTTCCAGCAGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATTAGCCCACTTTTCAAAGCTAATACAGAAAGTTCCAGCAGGAGA  500

seq1  AAGTATCACAAACAAAAGGGGACCACAGAAGAGTAGAAGCACTAGACCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCACAAACAAAAGGGGACCACAGAAGAGTAGAAGCACTAGACCTA  550

seq1  CTGATGAACAGAGGGAAACATCGCTGTGCCTGTGCAGTGTTTGGTAGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAACAGAGGGAAACATCGCTGTGCCTGTGCAGTGTTTGGTAGTGC  600

seq1  GCTAAGAGAATGCGTTCTTATGGTTGAATTCTATTGTTTAAAAAACATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAGAATGCGTTCTTATGGTTGAATTCTATTGTTTAAAAAACATGC  650

seq1  TGGTGTACAGACCATTAGTACCTTTGAACATGTCTTTGCTTGGGAGTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTACAGACCATTAGTACCTTTGAACATGTCTTTGCTTGGGAGTTAA  700

seq1  CATGAGGTTATTAAGGTAAGCCCTAATCCAGTATGACTGTCTCCTTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGTTATTAAGGTAAGCCCTAATCCAGTATGACTGTCTCCTTATAA  750

seq1  AAATGAAGATTTAGACAATGAGATGCAGACACAGGGAGAGCATCATCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGATTTAGACAATGAGATGCAGACACAGGGAGAGCATCATCTGA  800

seq1  AGATTACGGTTATGCTACTTCAATGAAAGGAACATCAAAGATTGCC-AAA  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGATTACGGTTATGCTACTTCAATGAAAGGAACATCAAAGATTGCCAAAA  850

seq1  AATCTACTAGATGGAGAAAGGTGAGCAACAGATTGTCCT--GGACAACCC  897
      |||||||||||||||||||||||||||||||||||||||  | |||||||
seq2  AATCTACTAGATGGAGAAAGGTGAGCAACAGATTGTCCTTGGAACAACCC  900

seq1  ACAGAAGAAAGCAGC-TCCCGAGACTCCTT-GGTTTCAGATTTCCAGCTG  945
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  ACAGAAGAAAGCAGCTTCCCGAGACTCCTTGGGTTTCAGATTTCCAGCTG  950

seq1  CCAGAGAGATACAAACATTTCT-GGTTTTTAAGCACTCTC-GTTTGTAAT  993
      |||||||||||||||||||||| |||||| |||||||||| |||||||||
seq2  CCAGAGAGATACAAACATTTCTGGGTTTTAAAGCACTCTCGGTTTGTAAT  1000

seq1  TGAATGTTGGGTTTGCCTCAATAAATCAATGCAGATTTAATTCAGTAGCT  1043
      |||||| |||| |||||||||| |||||||||||| |||  |||||||||
seq2  TGAATG-TGGGATTGCCTCAAT-AATCAATGCAGAATTA--TCAGTAGCT  1046

seq1  GTTGATTTAGAACTCGTTTAAAAAGCCATA-GTAACTTTG-CTTTTAGTG  1091
      | |||||||| ||||| |||||    |||| ||||||||| |||||||||
seq2  G-TGATTTAG-ACTCGGTTAAA---GCATAGGTAACTTTGCCTTTTAGTG  1091

seq1  TC-AGTTTTAGAG-ACCAT  1108
      || |||||||||| |||||
seq2  TCAAGTTTTAGAGAACCAT  1110


seq1: chr12_42260153_42261289
seq2: B6Ng01-173H23.g_65_1218 (reverse)

seq1  TAAGGTA--GT-GGCAGGGACATGGCGCC--AGCTATCTATTTTTCTTTC  45
      |||||||  || ||||||||||| |||||  ||||||| ||||| ||| |
seq2  TAAGGTATGGTGGGCAGGGACATTGCGCCCAAGCTATCAATTTTCCTTCC  50

seq1  TTCTGATGCTGC--TGCTTGGTAAAGTAACTTGCTCAGCAATGAGCA-CG  92
      ||| ||||||||   ||||||||||||||| ||||||||| |||||| ||
seq2  TTC-GATGCTGCCTGGCTTGGTAAAGTAAC-TGCTCAGCATTGAGCACCG  98

seq1  TGCTC-TGCTGCTAGCCAGTCTGACATTGAACTCAGC-ACGTTT--CTTT  138
      ||||| ||||||||| ||||||||||||||||||||| ||||||   |||
seq2  TGCTCTTGCTGCTAGTCAGTCTGACATTGAACTCAGCAACGTTTTCTTTT  148

seq1  CTTGTCCTGAGGTAG-AACTG-TGTACTA--CCCTCATAA-CCCTGCTTA  183
      ||||| ||||||||| ||||| |||||||  || |||||| |||||||||
seq2  CTTGT-CTGAGGTAGAAACTGTTGTACTAACCCTTCATAACCCCTGCTTA  197

seq1  TT-AATTAGCGTTACAACACTTGTAACATATAACTCTTTGTTTTCTTGGT  232
      || ||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTAAATTAGCGTTACAACACTTGTAACATATAACTC-TTGTTTTCTTGGT  246

seq1  TCAGATACATGTTCTGGG-TCCTCTTTAGGTGGCAAGTCAATTATCTGAA  281
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCAGATACATGTTCTGGGTTCCTCTTTAGGTGGCAAGTCAATTATCTGAA  296

seq1  -GGTTTAGGCTTTCTTCAGTATGCC-TTCCATTGTGCCATCATTCTCTAT  329
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGGTTTAGGCTTTCTTCAGTATGCCTTTCCATTGTGCCATCATTCTCTAT  346

seq1  AGTCCCTGTCATCTAGGAGCCTGTCTTGCCTTGTGAAGGACTTAAGAGGC  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTGTCATCTAGGAGCCTGTCTTGCCTTGTGAAGGACTTAAGAGGC  396

seq1  ACTCCCAGCTGTTGATCCTGAGCCTCACTCTGAAGGTCTCTATCAGTAAG  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAGCTGTTGATCCTGAGCCTCACTCTGAAGGTCTCTATCAGTAAG  446

seq1  CCCTAAGAGAAAATGTACAGAGGCAAGAATCTCATTAAAAAGAACGGTTC  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGAGAAAATGTACAGAGGCAAGAATCTCATTAAAAAGAACGGTTC  496

seq1  TCCATTACTGCTGAATTATAAAAGATTCAATTAATAGCTACCCCATCTAA  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTACTGCTGAATTATAAAAGATTCAATTAATAGCTACCCCATCTAA  546

seq1  GTATGTATCAGATTTTTGCCACACCGACTATTAACTGAAGTTTTTCAGAC  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATCAGATTTTTGCCACACCGACTATTAACTGAAGTTTTTCAGAC  596

seq1  TGGTAATTTTCCACATCTGATATCTTCCTGCTGATGAAGCTGTTAGTGTT  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATTTTCCACATCTGATATCTTCCTGCTGATGAAGCTGTTAGTGTT  646

seq1  CCTGAATGACCCATGTTAATATCAACTAGAATCTTTAACGCATTTATGCG  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATGACCCATGTTAATATCAACTAGAATCTTTAACGCATTTATGCG  696

seq1  AGATTTACTTATTTTTATACTCGTTATACTGAGATAAGCACCTCACAACA  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTACTTATTTTTATACTCGTTATACTGAGATAAGCACCTCACAACA  746

seq1  TTTGCCAGTATCTACAGTTAATTATATATCCATTCCTTTACTAGAATCAC  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAGTATCTACAGTTAATTATATATCCATTCCTTTACTAGAATCAC  796

seq1  TCGGCTTTTTTTTTTCATTTTTTTTCTTTTTTAGTGAAAATTAACCAAAT  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTTTTTTTTTTCATTTTTTTTCTTTTTTAGTGAAAATTAACCAAAT  846

seq1  TACAAATCCTGCAGCTTAAACAATTTTAATAACTTCTTTTAAGAGCAGAT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATCCTGCAGCTTAAACAATTTTAATAACTTCTTTTAAGAGCAGAT  896

seq1  TGGGGTTGAATATTTTTCTAGGATGGAAGTAAAGATCTGAATATTATAGG  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTGAATATTTTTCTAGGATGGAAGTAAAGATCTGAATATTATAGG  946

seq1  GGCCTTAGAGATGTAGAATCTTTCATTTTGGACTTTCTGTAGACACTACT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTAGAGATGTAGAATCTTTCATTTTGGACTTTCTGTAGACACTACT  996

seq1  GGAAATGCCTACTGGCTATGCCTTCCTGGGCTATGTGTGGCCAGCATTGT  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGCCTACTGGCTATGCCTTCCTGGGCTATGTGTGGCCAGCATTGT  1046

seq1  AGGCACCTGTGAGAATGGGAGGCCCTGGACACTAAGCTTCACTAGGTTGT  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCTGTGAGAATGGGAGGCCCTGGACACTAAGCTTCACTAGGTTGT  1096

seq1  AGTGGTTTTATATATATCCATCTCACTCTTCTGTCACAACTGAACTCCTG  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTTTATATATATCCATCTCACTCTTCTGTCACAACTGAACTCCTG  1146

seq1  TAGAATTC  1137
      ||||||||
seq2  TAGAATTC  1154


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