BAC Information

Click to search

BAC

Clone NameB6Ng01-174A05
Chromosome12 (Build37)
Map Location 37,532,393 - 37,533,321
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
Downstream geneMeox2, A530016O06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174A05.bB6Ng01-174A05.g
ACCGA002206GA002207
length501932
definitionB6Ng01-174A05.b B6Ng01-174A05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
agttcccctgaaatatcagcatacactaataatcactgattcatcactct
tctatgtttacttattcaagctgcatacttttagctttcatatataaata
cttaatattcttgtgggaaatagttcagattcatttctgcttgtacatgt
attcagttgctctattttatgtggatattttttgtgtatagggtatatat
atatataggatatatatatatataggatacacaaaaaaaatatacacaaa
agagagagagagtgtatatgtgtacgcggagatatgaatgagatctctct
cacaaaaaaatatagtgtatatatatgtgagagaaaagagtgtggagcgt
gtatgtaaacatataagagagagatatctgtgtgattatgtgtgtgcgca
gatatctggggggcagagtaccgcgcggaccctctctctagagagaggcg
tgtgcgcgcgcgcatatatatgagagatatatacccacactgtgtatata
t

gaattctccttaaacttaaaaagtcttgaaaccaatgttacaattcataa
atcactcagtgcctctttgattatttattacttttaataaatgatgaata
aaggttttattgtgtcataattgaaatcttaactgcattgtgaaatttgc
atatgccatgctgtgtaagggatgaagaaatctctctacaaattgtgagt
gaagcctgaagtgctcttactatttcttcttattcatgcctaagtaatct
gcaactttgatagcgtcagtcagcctcctgcttgtcaacattcgccatgt
tcttttacttcttcgcaaattatattttggcatttagttccctttaacaa
gttagtagcatctactcttagagataatgataatagttgccacatgtctg
aaaccatatgtgaacatttattgaaaaataagttaataatacgtttcaaa
tcttgttgcaatagttctacattctgtaaataagagcaacatttgttgtt
caggaattatcagaacttgaaaataaaacaaaacaaaaaaactaaacaaa
ataaacaaaacaacaagaaaaatgcaaaagaatccatcatgtcttaggtg
gggcttaactcaaattcaaacttgtcttaatatgtggaggaaggagatgt
tagcaaatccttgagggtagtgctcactttagtgtggagacaaacactgc
caacaggaggggattcttagatcatttgacttaacatgttaactcaacga
gtgtataaacacatgtgatacttttcagaagttgaagggattgtacagat
ctttttttattcagagcagccagtttcgtgtttagggtttttgctgtagg
tttttaggttttccctgatgcattcatctctggcagtttatctagttcgg
ttgtgttcatgtgggttccctacaatcatacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_37532393_37533321
seq2: B6Ng01-174A05.g_68_999

seq1  GAATTCTCCTTAAACTTAAAAAGTCTTGAAACCAATGTTACAATTCATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTAAACTTAAAAAGTCTTGAAACCAATGTTACAATTCATAA  50

seq1  ATCACTCAGTGCCTCTTTGATTATTTATTACTTTTAATAAATGATGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCAGTGCCTCTTTGATTATTTATTACTTTTAATAAATGATGAATA  100

seq1  AAGGTTTTATTGTGTCATAATTGAAATCTTAACTGCATTGTGAAATTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTATTGTGTCATAATTGAAATCTTAACTGCATTGTGAAATTTGC  150

seq1  ATATGCCATGCTGTGTAAGGGATGAAGAAATCTCTCTACAAATTGTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCATGCTGTGTAAGGGATGAAGAAATCTCTCTACAAATTGTGAGT  200

seq1  GAAGCCTGAAGTGCTCTTACTATTTCTTCTTATTCATGCCTAAGTAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTGAAGTGCTCTTACTATTTCTTCTTATTCATGCCTAAGTAATCT  250

seq1  GCAACTTTGATAGCGTCAGTCAGCCTCCTGCTTGTCAACATTCGCCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTTGATAGCGTCAGTCAGCCTCCTGCTTGTCAACATTCGCCATGT  300

seq1  TCTTTTACTTCTTCGCAAATTATATTTTGGCATTTAGTTCCCTTTAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACTTCTTCGCAAATTATATTTTGGCATTTAGTTCCCTTTAACAA  350

seq1  GTTAGTAGCATCTACTCTTAGAGATAATGATAATAGTTGCCACATGTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTAGCATCTACTCTTAGAGATAATGATAATAGTTGCCACATGTCTG  400

seq1  AAACCATATGTGAACATTTATTGAAAAATAAGTTAATAATACGTTTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATATGTGAACATTTATTGAAAAATAAGTTAATAATACGTTTCAAA  450

seq1  TCTTGTTGCAATAGTTCTACATTCTGTAAATAAGAGCAACATTTGTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTGCAATAGTTCTACATTCTGTAAATAAGAGCAACATTTGTTGTT  500

seq1  CAGGAATTATCAGAACTTGAAAATAAAACAAAACAAAAAAACTAAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATTATCAGAACTTGAAAATAAAACAAAACAAAAAAACTAAACAAA  550

seq1  ATAAACAAAACAACAAGAAAAATGCAAAAGAATCCATCATGTCTTAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAAACAACAAGAAAAATGCAAAAGAATCCATCATGTCTTAGGTG  600

seq1  GGGCTTAACTCAAATTCAAACTTGTCTTAATATGTGGAGGAAGGAGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTAACTCAAATTCAAACTTGTCTTAATATGTGGAGGAAGGAGATGT  650

seq1  TAGCAAATCCTTGAGGGTAGTGCTCACTTTAGTGTGGAGACAAACACTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAATCCTTGAGGGTAGTGCTCACTTTAGTGTGGAGACAAACACTGC  700

seq1  CAACAGGAGGGGATTCTTAGATCATTTGACTTAACATGTTAACTCAACGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGAGGGGATTCTTAGATCATTTGACTTAACATGTTAACTCAACGA  750

seq1  GTGTATAAACACATGTGATACTTTTCAGAAGTTGAAGGGATTGTACAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATAAACACATGTGATACTTTTCAGAAGTTGAAGGGATTGTACAGAT  800

seq1  C-TTTTTTATTCAGAGCAGCCAGTTTCGTGTTTA-GGTTTTTGCTGTAGG  848
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTTTTTTATTCAGAGCAGCCAGTTTCGTGTTTAGGGTTTTTGCTGTAGG  850

seq1  TTTTTAGGTTTT-CCTGATGCTTTCATCTCTGGCAGTTTTATCTAGTTCG  897
      |||||||||||| |||||||| |||||||||||||| |||||||||||||
seq2  TTTTTAGGTTTTCCCTGATGCATTCATCTCTGGCAG-TTTATCTAGTTCG  899

seq1  GTTGTGTTCATGT-GGTTCCCTACAATCATACG  929
      ||||||||||||| |||||||||||||||||||
seq2  GTTGTGTTCATGTGGGTTCCCTACAATCATACG  932


| Home | SequenceCutter | Blast | Download |