BAC Information

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BAC

Clone NameB6Ng01-174G19
Chromosome12 (Build37)
Map Location 36,260,768 - 36,385,167
singlet/doubletdoublet
Overlap geneLOC100043575
Upstream gene4921508M14Rik, Prps1l1, Snx13, Ahr
Downstream geneLOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174G19.bB6Ng01-174G19.g
ACCGA002510GA002511
length1,015754
definitionB6Ng01-174G19.b B6Ng01-174G19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,260,768 - 36,261,768)(36,384,556 - 36,385,167)
sequence
gaattctcttgttttgtttaaaaaatatagatgatatctcattgtgctct
caattgtttttttttttttgttttgttttgttttttggttttgttttttt
tttttttgtttttttttttttttttaagttacgtggtttggcaccagcaa
cttctgcttggtcacttatctcatgagcagcttatctgactcagcttcac
atgtcaatctctatctgctcccacccccaccgcaagggctgaaactaaga
gagcactgatagggatacataagcaaaggaggaacaggttggaaatgaag
atgaatgacagcagaggacaatcatgtaaaaattgcataatgcataattc
caacacgcacatgcacacactagtatgcatgcacacacacacacacacac
acgtacaatagattagtctcctcctttaaacacatatcctcaagtatctg
gaaatacattggagacaacctatcatttcctctatattttgatttatata
catagaaggaaaggggttcatcacaacaagagatgcaataaacatacctt
cacaatttacaaatttgaacacacacacactttcaagaatgtttagagtg
tgagtgaaacactatttggatactcagggagagatctgggccacagaaga
aggcacttagtggcttcaacatacaagtgatgtgaaaagtgatgtgataa
atacatgtatcattgcctgaggacttaaaggaataataaagtgttagtca
aaaaacctaaggagaggccacatggttgaagtaaatcaggatctatgggg
gagggaggttggccataagtcttgaccagattacaagtaggtgttccgaa
ggccgttcttgatgaatgaaattgccatgatttgactggggcatgcagga
ccttaaatggtgcaattggctccatgttacatgggaagagaggccctttg
gtattgtcaaactttatataccccatacatggggaatgctcagggccaag
aaagttggaagtgtg
gaattcatcacaatagacattttttttcttcttatgacagcacagatata
agtgtcaggtatccactcggtatccatggttacatataaacattcacacc
ttcttcagctttatgtgggttttcctatttgtcagtagccttctgcctat
catgtctttagatcctgccatttcttccactggatgctcttctttttctg
ggatcaaactcctagtttcttgcttagtctgacatggtgacttcctgact
gacttcacttctttaatctcttggtgataaactttggaaccatctatatt
agtttggcttttctgtaaactcttgaaaccactcctcctcacttcactaa
tagacaccctgctttgataacttctgttttagaaatggtttgtaaactga
attatataatattgaactttgtagtcttttcgtccaagatttttctaaag
acttaaccaaattgttatgtgtgttagtcagtaattccttgttgttgctg
actatgattctgctcagtttgtttaatctttcatgcgctgaaaggcatct
gggttatgtccagttttgtgttattacaaacaatgctgctataagcatct
gtgtacatgttttgcatgaacataaatctgtattgcccagacagacagtt
gctatttcatggagtacttcatgtgctttgtttataaaccatgaagctct
ttcccaaatcggcttttgcagtcatccattcccaaccaagtctcagaggt
gtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_36260768_36261768
seq2: B6Ng01-174G19.b_44_1058

seq1  GAATTCTCTTGTTTTGTTTAAAAAATATAGATGATATCTCATTGTGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGTTTTGTTTAAAAAATATAGATGATATCTCATTGTGCTCT  50

seq1  CAATTGTTTTTTTTTTTTTGTTTTGTTTTGTTTTTTGGTTTTGTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTTTTTTTTTTTTTGTTTTGTTTTGTTTTTTGGTTTTGTTTTTTT  100

seq1  TTTTTTTGTTTTTTTTTTTTTTTTTAAGTTACGTGGTTTGGCACCAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTTTTTTTTTTTTTTTTTAAGTTACGTGGTTTGGCACCAGCAA  150

seq1  CTTCTGCTTGGTCACTTATCTCATGAGCAGCTTATCTGACTCAGCTTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTTGGTCACTTATCTCATGAGCAGCTTATCTGACTCAGCTTCAC  200

seq1  ATGTCAATCTCTATCTGCTCCCACCCCCACCGCAAGGGCTGAAACTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAATCTCTATCTGCTCCCACCCCCACCGCAAGGGCTGAAACTAAGA  250

seq1  GAGCACTGATAGGGATACATAAGCAAAGGAGGAACAGGTTGGAAATGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGATAGGGATACATAAGCAAAGGAGGAACAGGTTGGAAATGAAG  300

seq1  ATGAATGACAGCAGAGGACAATCATGTAAAAATTGCATAATGCATAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGACAGCAGAGGACAATCATGTAAAAATTGCATAATGCATAATTC  350

seq1  CAACACGCACATGCACACACTAGTATGCATGCACACACACACACACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACGCACATGCACACACTAGTATGCATGCACACACACACACACACAC  400

seq1  ACGTACAATAGATTAGTCTCCTCCTTTAAACACATATCCTCAAGTATCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTACAATAGATTAGTCTCCTCCTTTAAACACATATCCTCAAGTATCTG  450

seq1  GAAATACATTGGAGACAACCTATCATTTCCTCTATATTTTGATTTATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACATTGGAGACAACCTATCATTTCCTCTATATTTTGATTTATATA  500

seq1  CATAGAAGGAAAGGGGTTCATCACAACAAGAGATGCAATAAACATACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAGGAAAGGGGTTCATCACAACAAGAGATGCAATAAACATACCTT  550

seq1  CACAATTTACAAATTTGAACACACACACACTTTCAAGAATGTTTAGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTTACAAATTTGAACACACACACACTTTCAAGAATGTTTAGAGTG  600

seq1  TGAGTGAAACACTATTTGGATACTCAGGGAGAGATCTGGGCCACAGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAAACACTATTTGGATACTCAGGGAGAGATCTGGGCCACAGAAGA  650

seq1  AGGCACTTAGTGGCTTCAACATACAAGTGATGTGAAAAGTGATGTGATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTTAGTGGCTTCAACATACAAGTGATGTGAAAAGTGATGTGATAA  700

seq1  ATACATGTATCATTGCCTGAGGACTTAAAGGAATAATAAAGTGTTAGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTATCATTGCCTGAGGACTTAAAGGAATAATAAAGTGTTAGTCA  750

seq1  AAAAACCTAAGGAGAGGCCACATGGTTGAAGTAAATCAGGATCTATGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCTAAGGAGAGGCCACATGGTTGAAGTAAATCAGGATCTATGGGG  800

seq1  GA-GGAGGTTGGCCATAAGTCTTGACCAGATTAC-AGTAGGTGTT-CGAA  847
      || ||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  GAGGGAGGTTGGCCATAAGTCTTGACCAGATTACAAGTAGGTGTTCCGAA  850

seq1  GGCCGTTC-TGATGAAGGAAATTG-CATGA-TTGACT-GGGCATGCAGGA  893
      |||||||| ||||||| ||||||| ||||| |||||| ||||||||||||
seq2  GGCCGTTCTTGATGAATGAAATTGCCATGATTTGACTGGGGCATGCAGGA  900

seq1  -CTTAAATGGTGC-AGTGGCT-CATGTTACATGGGAAGAGAGGCCCTTTG  940
       |||||||||||| | ||||| ||||||||||||||||||||||||||||
seq2  CCTTAAATGGTGCAATTGGCTCCATGTTACATGGGAAGAGAGGCCCTTTG  950

seq1  GTATTG-CAAACTTTATATACCCCAGTACA-GGGGAATGC-CAGGGCCAA  987
      |||||| |||||||||||||||||| |||| ||||||||| |||||||||
seq2  GTATTGTCAAACTTTATATACCCCA-TACATGGGGAATGCTCAGGGCCAA  999

seq1  GAA--GTGGAAGTGGG  1001
      |||   |||||||| |
seq2  GAAAGTTGGAAGTGTG  1015

seq1: chr12_36384556_36385167
seq2: B6Ng01-174G19.g_69_680 (reverse)

seq1  AAACATGTACACAGATGCTTATAGCAGCATTGTTTGTAATAACACAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTACACAGATGCTTATAGCAGCATTGTTTGTAATAACACAAAAC  50

seq1  TGGACATAACCCAGATGCCTTTCAGCGCATGAAAGATTAAACAAACTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATAACCCAGATGCCTTTCAGCGCATGAAAGATTAAACAAACTGAG  100

seq1  CAGAATCATAGTCAGCAACAACAAGGAATTACTGACTAACACACATAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCATAGTCAGCAACAACAAGGAATTACTGACTAACACACATAACA  150

seq1  ATTTGGTTAAGTCTTTAGAAAAATCTTGGACGAAAAGACTACAAAGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTTAAGTCTTTAGAAAAATCTTGGACGAAAAGACTACAAAGTTCA  200

seq1  ATATTATATAATTCAGTTTACAAACCATTTCTAAAACAGAAGTTATCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATATAATTCAGTTTACAAACCATTTCTAAAACAGAAGTTATCAAA  250

seq1  GCAGGGTGTCTATTAGTGAAGTGAGGAGGAGTGGTTTCAAGAGTTTACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTGTCTATTAGTGAAGTGAGGAGGAGTGGTTTCAAGAGTTTACAG  300

seq1  AAAAGCCAAACTAATATAGATGGTTCCAAAGTTTATCACCAAGAGATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCAAACTAATATAGATGGTTCCAAAGTTTATCACCAAGAGATTAA  350

seq1  AGAAGTGAAGTCAGTCAGGAAGTCACCATGTCAGACTAAGCAAGAAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGAAGTCAGTCAGGAAGTCACCATGTCAGACTAAGCAAGAAACTA  400

seq1  GGAGTTTGATCCCAGAAAAAGAAGAGCATCCAGTGGAAGAAATGGCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTGATCCCAGAAAAAGAAGAGCATCCAGTGGAAGAAATGGCAGGA  450

seq1  TCTAAAGACATGATAGGCAGAAGGCTACTGACAAATAGGAAAACCCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGACATGATAGGCAGAAGGCTACTGACAAATAGGAAAACCCACAT  500

seq1  AAAGCTGAAGAAGGTGTGAATGTTTATATGTAACCATGGATACCGAGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGAAGAAGGTGTGAATGTTTATATGTAACCATGGATACCGAGTGG  550

seq1  ATACCTGACACTTATATCTGTGCTGTCATAAGAAGAAAAAAAATGTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGACACTTATATCTGTGCTGTCATAAGAAGAAAAAAAATGTCTAT  600

seq1  TGTGATGAATTC  612
      ||||||||||||
seq2  TGTGATGAATTC  612