BAC Information

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BAC

Clone NameB6Ng01-174N11
Chromosome12 (Build37)
Map Location 76,826,155 - 76,942,697
singlet/doubletdoublet
Overlap geneSgpp1, Syne2
Upstream geneKcnh5, Rhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931
Downstream geneEsr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174N11.bB6Ng01-174N11.g
ACCGA002808GA002809
length862861
definitionB6Ng01-174N11.b B6Ng01-174N11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,941,840 - 76,942,697)(76,826,155 - 76,827,015)
sequence
gaattcttggggcggcaacctgactccaaattcctctgcatctttcaggt
ataaaacagactctcttctgtgtggagtgtgtccagcttgcagggcatca
gcctcacagacctcaggcagccaaagacagctaggaatatatgcccaaga
aagaatcacatacgtgcttagaacaatgtgagatttgtttgtgttccccc
ctcccctcccgccactccccacccaacacagtcgagtgtcttctgaagct
tgcatttcacaggtgacagtgtcacgctgcaatgacgaaggtgacaggcc
tgccactgagcacctccctcgctcttccaccccattcttatgaacaagga
cccacactactctgagctgtctgtcacttctcagtatgacatcaggactc
ccattcctctagaaggtaaagaatcactaaagccctgtggcacacagctg
taggcagacacatctttttgcttaatgctgcttcccggggatcttcaaga
gcaggaagcagaaacccagggagactggcgtcagaagatcattattttaa
ttctcggtgccccaataaagaagacgttagccaacatttctacacaatcg
accaatcccccctcccaacataatcacccacccttgagagcaggccagtc
agaaggctgccggaccctcgggttgtacggacaggcgtctcaagcacagg
ctacggaaatccagactcaccagggcagagtcacagtcttgtttcccatg
ttgtcatcccacccactcattactcaaagaactccaccaagcttagcggc
ccaggctattacatgaccggaagtcacacctgagacagagtcacgaaaca
ccagaaaacaga
gaattcacaggtgcaggagacttacgcattcacccttaccctgactagct
gactccgagaagagagctcccaaagagtcgaggtggggtttacagggctg
taagctaggctgattctgtttctgtttcttcaactgtgggaccctagggt
ggccacgcaatgcccttctatttcaggttccgccgggcgtggtggcgcat
tgcctttaatctcagcacttgggaggcagaggcaggcggatttctgagtt
cgaggccagcctggtctacagagtgagttccaggacagccaggggtacac
agagaaaccctgtctcagaaaaaaaaaatctatttcaggttcctcctatc
taaaaggaggtaattagtatttaggacagtaatacgcctgcagtgtaaaa
aaacatctacttgagaagctgaggcgggaagattggtagtcaaagtaagt
gtggtccacacagtaaggaaattaccaagaacttgtcttaaaaaggagga
aaaaaggaggccacagtggtagagcgcttgtggagccacagagcgcttgt
ggagcacatgtggggcccggctcagtctcacggcactgtgcatgaattaa
agagtggaatgacatggttcctcagagaaataacctagagagcatgtctg
tccattatatgaagaaatttacactgaggagctaattcatgccatggtag
aggctcacatgagccaaaccctcaggctgaagatccagggaaggacgtag
gtgtagctcaaatctctctcctggggcaaacctgtctacccaaggtcagt
gcatggacagatgtagagaactgactccccaccaagttgtcccttgactc
ctcagagagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_76941840_76942697
seq2: B6Ng01-174N11.b_37_898 (reverse)

seq1  TCTGTTTTCTGGTGTTTCGTGACTCTGTCTCAGGTGTGACTTCCGGTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCTGGTGTTTCGTGACTCTGTCTCAGGTGTGACTTCCGGTCAT  50

seq1  GT-ATAGCCTGGGCCGCT-AGCTTGGTGGAGTTCTTTGAGTAATGAGTGG  98
      || ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTAATAGCCTGGGCCGCTAAGCTTGGTGGAGTTCTTTGAGTAATGAGTGG  100

seq1  GTGGGATGAC-ACATGGG-AACAAGACTGTGACTCTGCCCTGGTGAGTCT  146
      |||||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  GTGGGATGACAACATGGGAAACAAGACTGTGACTCTGCCCTGGTGAGTCT  150

seq1  GGATTTCCGTAGCCTGTGCTTGAGACGCCTGTCCGTACAACCCGAGGGTC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCCGTAGCCTGTGCTTGAGACGCCTGTCCGTACAACCCGAGGGTC  200

seq1  CGGCAGCCTTCTGACTGGCCTGCTCTCAAGGGTGGGTGATTATGTTGGGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGCCTTCTGACTGGCCTGCTCTCAAGGGTGGGTGATTATGTTGGGA  250

seq1  GGGGGGATTGGTCGATTGTGTAGAAATGTTGGCTAACGTCTTCTTTATTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGATTGGTCGATTGTGTAGAAATGTTGGCTAACGTCTTCTTTATTG  300

seq1  GGGCACCGAGAATTAAAATAATGATCTTCTGACGCCAGTCTCCCTGGGTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCGAGAATTAAAATAATGATCTTCTGACGCCAGTCTCCCTGGGTT  350

seq1  TCTGCTTCCTGCTCTTGAAGATCCCCGGGAAGCAGCATTAAGCAAAAAGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCCTGCTCTTGAAGATCCCCGGGAAGCAGCATTAAGCAAAAAGA  400

seq1  TGTGTCTGCCTACAGCTGTGTGCCACAGGGCTTTAGTGATTCTTTACCTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGCCTACAGCTGTGTGCCACAGGGCTTTAGTGATTCTTTACCTT  450

seq1  CTAGAGGAATGGGAGTCCTGATGTCATACTGAGAAGTGACAGACAGCTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGAATGGGAGTCCTGATGTCATACTGAGAAGTGACAGACAGCTCA  500

seq1  GAGTAGTGTGGGTCCTTGTTCATAAGAATGGGGTGGAAGAGCGAGGGAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTGTGGGTCCTTGTTCATAAGAATGGGGTGGAAGAGCGAGGGAGG  550

seq1  TGCTCAGTGGCAGGCCTGTCACCTTCGTCATTGCAGCGTGACACTGTCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTGGCAGGCCTGTCACCTTCGTCATTGCAGCGTGACACTGTCAC  600

seq1  CTGTGAAATGCAAGCTTCAGAAGACACTCGACTGTGTTGGGTGGGGAGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAATGCAAGCTTCAGAAGACACTCGACTGTGTTGGGTGGGGAGTG  650

seq1  GCGGGAGGGGAGGGGGGAACACAAACAAATCTCACATTGTTCTAAGCACG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGAGGGGAGGGGGGAACACAAACAAATCTCACATTGTTCTAAGCACG  700

seq1  TATGTGATTCTTTCTTGGGCATATATTCCTAGCTGTCTTTGGCTGCCTGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGATTCTTTCTTGGGCATATATTCCTAGCTGTCTTTGGCTGCCTGA  750

seq1  GGTCTGTGAGGCTGATGCCCTGCAAGCTGGACACACTCCACACAGAAGAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTGAGGCTGATGCCCTGCAAGCTGGACACACTCCACACAGAAGAG  800

seq1  AGTCTGTTTTATACCTGAAAGATGCAGAGGAATTTGGAGTCAGGTTGCCG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTTTTATACCTGAAAGATGCAGAGGAATTTGGAGTCAGGTTGCCG  850

seq1  CCCCAAGAATTC  858
      ||||||||||||
seq2  CCCCAAGAATTC  862

seq1: chr12_76826155_76827015
seq2: B6Ng01-174N11.g_71_931

seq1  GAATTCACAGGTGCAGGAGACTTACGCATTCACCCTTACCCTGACTAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGTGCAGGAGACTTACGCATTCACCCTTACCCTGACTAGCT  50

seq1  GACTCCGAGAAGAGAGCTCCCAAAGAGTCGAGGTGGGGTTTACAGGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCGAGAAGAGAGCTCCCAAAGAGTCGAGGTGGGGTTTACAGGGCTG  100

seq1  TAAGCTAGGCTGATTCTGTTTCTGTTTCTTCAACTGTGGGACCCTAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAGGCTGATTCTGTTTCTGTTTCTTCAACTGTGGGACCCTAGGGT  150

seq1  GGCCACGCAATGCCCTTCTATTTCAGGTTCCGCCGGGCGTGGTGGCGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACGCAATGCCCTTCTATTTCAGGTTCCGCCGGGCGTGGTGGCGCAT  200

seq1  TGCCTTTAATCTCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTAATCTCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTT  250

seq1  CGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGGTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGGTACAC  300

seq1  AGAGAAACCCTGTCTCAGAAAAAAAAAATCTATTTCAGGTTCCTCCTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCCTGTCTCAGAAAAAAAAAATCTATTTCAGGTTCCTCCTATC  350

seq1  TAAAAGGAGGTAATTAGTATTTAGGACAGTAATACGCCTGCAGTGTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAGGTAATTAGTATTTAGGACAGTAATACGCCTGCAGTGTAAAA  400

seq1  AAACATCTACTTGAGAAGCTGAGGCGGGAAGATTGGTAGTCAAAGTAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCTACTTGAGAAGCTGAGGCGGGAAGATTGGTAGTCAAAGTAAGT  450

seq1  GTGGTCCACACAGTAAGGAAATTACCAAGAACTTGTCTTAAAAAGGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCACACAGTAAGGAAATTACCAAGAACTTGTCTTAAAAAGGAGGA  500

seq1  AAAAAGGAGGCCACAGTGGTAGAGCGCTTGTGGAGCCACAGAGCGCTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAGGCCACAGTGGTAGAGCGCTTGTGGAGCCACAGAGCGCTTGT  550

seq1  GGAGCACATGTGGGGCCCGGCTCAGTCTCACGGCACTGTGCATGAATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACATGTGGGGCCCGGCTCAGTCTCACGGCACTGTGCATGAATTAA  600

seq1  AGAGTGGAATGACATGGTTCCTCAGAGAAATAACCTAGAGAGCATGTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGAATGACATGGTTCCTCAGAGAAATAACCTAGAGAGCATGTCTG  650

seq1  TCCATTATATGAAGAAATTTACACTGAGGAGCTAATTCATGCCATGGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTATATGAAGAAATTTACACTGAGGAGCTAATTCATGCCATGGTAG  700

seq1  AGGCTCACAAGAGCCAAACCCTCAGGCTGAAGATCCAGGGAAGGACGTAG  750
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCACATGAGCCAAACCCTCAGGCTGAAGATCCAGGGAAGGACGTAG  750

seq1  GTGTAGCTCAAATCTCTCTCCTGGGGCAAACCTGTCTACCCAAGGTCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCTCAAATCTCTCTCCTGGGGCAAACCTGTCTACCCAAGGTCAGT  800

seq1  GCATGGACAGATGTAGAGAACTGACT-CCCACCAAGTTGTCCCCTGACTC  849
      |||||||||||||||||||||||||| |||||||||||||||| ||||| 
seq2  GCATGGACAGATGTAGAGAACTGACTCCCCACCAAGTTGTCCCTTGACT-  849

seq1  CCACAGAGAGAC  861
      || |||||||||
seq2  CCTCAGAGAGAC  861