BAC Information

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BAC

Clone NameB6Ng01-175F13
Chromosome12 (Build37)
Map Location 47,639,168 - 47,786,004
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC664952
Downstream geneNova1, LOC100039190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175F13.bB6Ng01-175F13.g
ACCGA003175GA003176
length1,024931
definitionB6Ng01-175F13.b B6Ng01-175F13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,639,168 - 47,640,183)(47,785,078 - 47,786,004)
sequence
gaattcttcatagggcaagtctgtatacaggaaatataaaaggtatatgt
cccaattcatgataaatatgcacagctgactgcaatgagctttgattctg
attccccagagaaaggtggccaggatgacacttaaaaccaaccctacagt
taaaagtcaaaatatatcaggctttccaataagtaaacctagtggccttg
tcaattcatatcatcgattgatatctcaactagccatttgtaaagaaaag
tatgggggaaacctatgcttttatgaaaaacaaaacaaaacaacaaaaca
aaacaaaaaaacaaaactgaaaaaagtgactggaaaacaggtacatccaa
cggtagaatactaaggtccccaaaatgactaaaataaatttgaaatacta
ctggagcagtttcttgaagcacttatatagtaagtaacttgaaatgaggc
taaccacacgtatttacatgattttacacgaattgacataaactgtcatg
gatagtgtcaaatttgttcttggaacttctggtcctaataaatactgaaa
taaatgttcctggggcagatttgaaaccattgtctaagttcagtcaggac
caaaatgaaaagaaacaacctgtgttaggacaggctatccttacagagga
taaaaatgcattccatacatagcaaactcctatgtcgtgtgtgtgtgtgt
gtgtgcgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgcgtgtgtgt
gtgtgtgtgtgtcggaatatcaccagcaagtttcttagctaaatttacaa
ttttcacattttttctcttgggatttttttctcttcagttttatttttta
gaaccatctttatattcatgggaaattggcagaagattcagagctcttga
agaactagtttgtgtccattttagatttaaaaactattttataggaaaag
acaatcacggcttgttctggtttatgatacaatcctttatatctcaaaac
tggggctattccccttacttgtac

gaattcattgtgtatatttagaatgcgatcaatttaaaatgtacaaccct
tctgtaaactcaagaacattgtatccttcaataaccgtttgccttctatt
tttaataggcaaaaaattaaatcattcaaagtgagtccttgtattttacc
tacatttctgacagtgtttgtgctgaatacttacaattaagaacaaacct
atgaatgtcacttagtttttaatgtttgaatacttcacataattcattaa
caattgtggtcatatctgagttataatgtatcaaaaatttaacctatctg
atacctatccagattagcatctctcagaaatcagtccaaatgtaagaagg
taagttaagatgtgctgtttatgtagtaaaattgaatggatcagacctac
ttttcaagtaataaatactcaccatgagaataataaaaatgtaagtggat
atgtaatatatgttccttgtaggttggtgaaataaaataagatacaatga
gaaattacactatgatatgatgtacctgttataaaaatcttaaagtattt
tgtttcttccttctttgtttttattacaccatgagggtatttcagctaat
ttcaagaaatctgattgaagattgttccgagcccagccctctcacatttg
aaatattgaatattggaatattgatgtatatacagtagggtaaatttttt
gtgaccactcttcaatgactagtgcatagtcaaacccacagttaaaaatg
acatcttttcactgacaagaaataccagacgttgcttgtttatggcacat
aaaagtcagtagattaaagaaaataacatacactacacaactgtcttcaa
atgttgggtaagacttcagtatacaaaagcaaatggcatggtgcttccat
tactaaattaatatacatttaaattgtcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_47639168_47640183
seq2: B6Ng01-175F13.b_45_1068

seq1  GAATTCTTCATAGGGCAAGTCTGTATACAGGAAATATAAAAGGTATATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATAGGGCAAGTCTGTATACAGGAAATATAAAAGGTATATGT  50

seq1  CCCAATTCATGATAAATATGCACAGCTGACTGCAATGAGCTTTGATTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTCATGATAAATATGCACAGCTGACTGCAATGAGCTTTGATTCTG  100

seq1  ATTCCCCAGAGAAAGGTGGCCAGGATGACACTTAAAACCAACCCTACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCAGAGAAAGGTGGCCAGGATGACACTTAAAACCAACCCTACAGT  150

seq1  TAAAAGTCAAAATATATCAGGCTTTCCAATAAGTAAACCTAGTGGCCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTCAAAATATATCAGGCTTTCCAATAAGTAAACCTAGTGGCCTTG  200

seq1  TCAATTCATATCATCGATTGATATCTCAACTAGCCATTTGTAAAGAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCATATCATCGATTGATATCTCAACTAGCCATTTGTAAAGAAAAG  250

seq1  TATGGGGGAAACCTATGCTTTTATGAAAAACAAAACAAAACAACAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGGGAAACCTATGCTTTTATGAAAAACAAAACAAAACAACAAAACA  300

seq1  AAACAAAAAAACAAAACTGAAAAAAGTGACTGGAAAACAGGTACATCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAAACAAAACTGAAAAAAGTGACTGGAAAACAGGTACATCCAA  350

seq1  CGGTAGAATACTAAGGTCCCCAAAATGACTAAAATAAATTTGAAATACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAGAATACTAAGGTCCCCAAAATGACTAAAATAAATTTGAAATACTA  400

seq1  CTGGAGCAGTTTCTTGAAGCACTTATATAGTAAGTAACTTGAAATGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCAGTTTCTTGAAGCACTTATATAGTAAGTAACTTGAAATGAGGC  450

seq1  TAACCACACGTATTTACATGATTTTACACGAATTGACATAAACTGTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACACGTATTTACATGATTTTACACGAATTGACATAAACTGTCATG  500

seq1  GATAGTGTCAAATTTGTTCTTGGAACTTCTGGTCCTAATAAATACTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGTCAAATTTGTTCTTGGAACTTCTGGTCCTAATAAATACTGAAA  550

seq1  TAAATGTTCCTGGGGCAGATTTGAAACCATTGTCTAAGTTCAGTCAGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTCCTGGGGCAGATTTGAAACCATTGTCTAAGTTCAGTCAGGAC  600

seq1  CAAAATGAAAAGAAACAACCTGTGTTAGGACAGGCTATCCTTACAGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAAAAGAAACAACCTGTGTTAGGACAGGCTATCCTTACAGAGGA  650

seq1  TAAAAATGCATTCCATACATAGCAAACTCCTATGTCGTGTGTGTGTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGCATTCCATACATAGCAAACTCCTATGTCGTGTGTGTGTGTGT  700

seq1  GTGTGCGTGTGTGTGTGTGTGTGTGTGTGCGTGTGCGTGTGCGTGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCGTGTGTGTGTGTGTGTGTGTGTGCGTGTGCGTGTGCGTGTGTGT  750

seq1  GTGTGTGTGTGTCGGAATATCACCAGCAAGTTTCTTAGCTAAATTTACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTCGGAATATCACCAGCAAGTTTCTTAGCTAAATTTACAA  800

seq1  -TTTCACA-TTTTTCTCTTTGGA-TTTTTTCTCTTCAGTTTTATTTTTTA  847
       ||||||| |||||||||| ||| ||||||||||||||||||||||||||
seq2  TTTTCACATTTTTTCTCTTGGGATTTTTTTCTCTTCAGTTTTATTTTTTA  850

seq1  GAAC--ACTTTATATTCATGGGAAATTGGGCAGAAGATACAGAGCTCTTG  895
      ||||   |||||||||||||||||||| |||||||||| |||||||||||
seq2  GAACCATCTTTATATTCATGGGAAATT-GGCAGAAGATTCAGAGCTCTTG  899

seq1  AAGAACTAGCTTGTGTCCATTTTAGGATTAAAAACTATTTTATAGG-AAA  944
      ||||||||| |||||||||||||||  ||||||||||||||||||| |||
seq2  AAGAACTAGTTTGTGTCCATTTTAGATTTAAAAACTATTTTATAGGAAAA  949

seq1  GACAAACTAGGCTTGTTCCTGTTTATGATACAAT-CTTTATTTCTCAAAA  993
      ||||| |  |||||||||  |||||||||||||| |||||| ||||||||
seq2  GACAATCACGGCTTGTTCTGGTTTATGATACAATCCTTTATATCTCAAAA  999

seq1  CTGGGGCTAT--CCCCTACTTGTAC  1016
      ||||||||||  ||| |||||||||
seq2  CTGGGGCTATTCCCCTTACTTGTAC  1024


seq1: chr12_47785078_47786004
seq2: B6Ng01-175F13.g_68_998 (reverse)

seq1  TATGACA--TTTAATGTATTATTACTTAGTAATGGAAGCACCATGCC-TT  47
      |||||||  || |||||||  | | |||||||||||||||||||||| ||
seq2  TATGACAATTTAAATGTATATTAATTTAGTAATGGAAGCACCATGCCATT  50

seq1  TGCTTTTGTATACTGAAGTCTTTACCCAACATTTGGAGACAGTTGTGTAG  97
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  TGCTTTTGTATACTGAAGTC-TTACCCAACATTTGAAGACAGTTGTGTAG  99

seq1  TGTATGTTATTTTCTTTAATCTACTGAC-TTTATGTGCCATAAACAAGCA  146
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGTATGTTATTTTCTTTAATCTACTGACTTTTATGTGCCATAAACAAGCA  149

seq1  ACGTCTGGTATTTCTTGTCAGTGAAAAGATGTCATTTTTAACTGTGGGTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTGGTATTTCTTGTCAGTGAAAAGATGTCATTTTTAACTGTGGGTT  199

seq1  TGACTATGCACTAGTCATTGAAGAGTGGTCAC-AAAAATTTACCCTACTG  245
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGACTATGCACTAGTCATTGAAGAGTGGTCACAAAAAATTTACCCTACTG  249

seq1  TATATACATCAATATTCCAATATTCAATATTTCAAATGTGAGAGGGCTGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACATCAATATTCCAATATTCAATATTTCAAATGTGAGAGGGCTGG  299

seq1  GCTCGGAACAATCTTCAATCAGATTTCTTGAAATTAGCTGAAATACCCTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGAACAATCTTCAATCAGATTTCTTGAAATTAGCTGAAATACCCTC  349

seq1  ATGGTGTAATAAAAACAAAGAAGGAAGAAACAAAATACTTTAAGATTTTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTAATAAAAACAAAGAAGGAAGAAACAAAATACTTTAAGATTTTT  399

seq1  ATAACAGGTACATCATATCATAGTGTAATTTCTCATTGTATCTTATTTTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGGTACATCATATCATAGTGTAATTTCTCATTGTATCTTATTTTA  449

seq1  TTTCACCAACCTACAAGGAACATATATTACATATCCACTTACATTTTTAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCAACCTACAAGGAACATATATTACATATCCACTTACATTTTTAT  499

seq1  TATTCTCATGGTGAGTATTTATTACTTGAAAAGTAGGTCTGATCCATTCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCATGGTGAGTATTTATTACTTGAAAAGTAGGTCTGATCCATTCA  549

seq1  ATTTTACTACATAAACAGCACATCTTAACTTACCTTCTTACATTTGGACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTACATAAACAGCACATCTTAACTTACCTTCTTACATTTGGACT  599

seq1  GATTTCTGAGAGATGCTAATCTGGATAGGTATCAGATAGGTTAAATTTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGAGAGATGCTAATCTGGATAGGTATCAGATAGGTTAAATTTTT  649

seq1  GATACATTATAACTCAGATATGACCACAATTGTTAATGAATTATGTGAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATTATAACTCAGATATGACCACAATTGTTAATGAATTATGTGAAG  699

seq1  TATTCAAACATTAAAAACTAAGTGACATTCATAGGTTTGTTCTTAATTGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAACATTAAAAACTAAGTGACATTCATAGGTTTGTTCTTAATTGT  749

seq1  AAGTATTCAGCACAAACACTGTCAGAAATGTAGGTAAAATACAAGGACTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTCAGCACAAACACTGTCAGAAATGTAGGTAAAATACAAGGACTC  799

seq1  ACTTTGAATGATTTAATTTTTTGCCTATTAAAAATAGAAGGCAAACGGTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAATGATTTAATTTTTTGCCTATTAAAAATAGAAGGCAAACGGTT  849

seq1  ATTGAAGGATACAATGTTCTTGAGTTTACAGAAGGGTTGTACATTTTAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGGATACAATGTTCTTGAGTTTACAGAAGGGTTGTACATTTTAAA  899

seq1  TTGATCGCATTCTAAATATACACAATGAATTC  927
      ||||||||||||||||||||||||||||||||
seq2  TTGATCGCATTCTAAATATACACAATGAATTC  931


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