BAC Information

Click to search

BAC

Clone NameB6Ng01-175L06
Chromosome12 (Build37)
Map Location 38,681,408 - 38,682,543
singlet/doubletsinglet
Overlap geneDgkb
Upstream geneMeox2, A530016O06Rik, LOC100043139
Downstream geneLOC668824, LOC100043142, Etv1, LOC100043145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175L06.bB6Ng01-175L06.g
ACCGA003439GA003440
length1,138283
definitionB6Ng01-175L06.b B6Ng01-175L06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattttggatattacaaggccatgaaaggccattcgtgaaggtac
agccttagttgtagttgacagcccaggactaaggggtcatgcaaaggatt
tgaggcttggcatcatgaagagagcctatgagaggccattgatgaagcct
agttgcagctaaagacccccctgtattggagatgttggtaccattggatg
atgatcaagaacagcagtggcagtggagtggatcaacctggccttagagt
gccattgagggcacagttggagaagtgatgcaaaccctttggagaagcac
agaagatcatgtgtggatcccagacattgaaacaagaagttgcaacatcg
agtctgccttgaagaccttaagattttagagatgccagagccgtgggata
tctactaggaaagctgctaacagggagtgtgaacagttcaggaaagaagt
ttgttgcagtcactgaagatgaaaaaggagttggagatcttaaaactact
ttgacattatacatggagattcagcgtttaatttgcccagctggtttcct
ttctttatttaggggttacagttaagtgattggatggatctctgaagaga
tttttgactatagggacttggaagttggacgaaatgtactttttaattat
gttatgactacatatggcccccatagtccttgaacaagcctatgggggcc
agggagtagaatgccatggtttgaatatgcttgctccagggagtggcaca
acttggaagtgtggcctcattgtaataaatgtgtcattgtgggcatgggt
ttttcttcctagtcttccaatagaagccttcagatgaagatatagaattc
tcagttctgcctacaccatgcctgcctagatgctgccatgatgataatga
acttgaactctgaaacctgtaagccctgccccagaaaaattgtcctttgt
aagacttgcccttagtcatggtgtctgttcacagcagttaaaccctagac
ataggcttagaggatattgttgctgtcttcaccgccttgtagaaaaatga
agaagaaatgtatacattttaattatccagtatggtattaagacaaacca
acattctgggctctttccatctcagctctctccttttt

ccaggacacaatccacagaactcaaaaaggttaacaagccaaagggccca
aatgaggatgatttaatcccacttaggagggagaaaaaagaaatcactgg
aggcagacagagggaaggacctgggtgggagaggggacagggaggggaag
tggagaacatgatctggtattggggggaaaaggactaaagccctgtgatc
ctgcagaaataatgcaaacaggcaactttggaaagtaggaggtgggggga
gtgacttttattatccttttttttttttttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_38681408_38682543
seq2: B6Ng01-175L06.b_43_1180

seq1  GAATTCATTTTGGATATTACAAGGCCATGAAAGGCCATTCGTGAAGGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGGATATTACAAGGCCATGAAAGGCCATTCGTGAAGGTAC  50

seq1  AGCCTTAGTTGTAGTTGACAGCCCAGGACTAAGGGGTCATGCAAAGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTAGTTGTAGTTGACAGCCCAGGACTAAGGGGTCATGCAAAGGATT  100

seq1  TGAGGCTTGGCATCATGAAGAGAGCCTATGAGAGGCCATTGATGAAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTTGGCATCATGAAGAGAGCCTATGAGAGGCCATTGATGAAGCCT  150

seq1  AGTTGCAGCTAAAGACCCCCCTGTATTGGAGATGTTGGTACCATTGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCAGCTAAAGACCCCCCTGTATTGGAGATGTTGGTACCATTGGATG  200

seq1  ATGATCAAGAACAGCAGTGGCAGTGGAGTGGATCAACCTGGCCTTAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCAAGAACAGCAGTGGCAGTGGAGTGGATCAACCTGGCCTTAGAGT  250

seq1  GCCATTGAGGGCACAGTTGGAGAAGTGATGCAAACCCTTTGGAGAAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGAGGGCACAGTTGGAGAAGTGATGCAAACCCTTTGGAGAAGCAC  300

seq1  AGAAGATCATGTGTGGATCCCAGACATTGAAACAAGAAGTTGCAACATCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATCATGTGTGGATCCCAGACATTGAAACAAGAAGTTGCAACATCG  350

seq1  AGTCTGCCTTGAAGACCTTAAGATTTTAGAGATGCCAGAGCCGTGGGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCCTTGAAGACCTTAAGATTTTAGAGATGCCAGAGCCGTGGGATA  400

seq1  TCTACTAGGAAAGCTGCTAACAGGGAGTGTGAACAGTTCAGGAAAGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTAGGAAAGCTGCTAACAGGGAGTGTGAACAGTTCAGGAAAGAAGT  450

seq1  TTGTTGCAGTCACTGAAGATGAAAAAGGAGTTGGAGATCTTAAAACTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCAGTCACTGAAGATGAAAAAGGAGTTGGAGATCTTAAAACTACT  500

seq1  TTGACATTATACATGGAGATTCAGCGTTTAATTTGCCCAGCTGGTTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTATACATGGAGATTCAGCGTTTAATTTGCCCAGCTGGTTTCCT  550

seq1  TTCTTTATTTAGGGGTTACAGTTAAGTGATTGGATGGATCTCTGAAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTTAGGGGTTACAGTTAAGTGATTGGATGGATCTCTGAAGAGA  600

seq1  TTTTTGACTATAGGGACTTGGAAGTTGGACGAAATGTACTTTTTAATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGACTATAGGGACTTGGAAGTTGGACGAAATGTACTTTTTAATTAT  650

seq1  GTTATGACTACATATGGCCCCCATAGTCCTTGAACAAGCCTATGGGGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGACTACATATGGCCCCCATAGTCCTTGAACAAGCCTATGGGGGCC  700

seq1  AGGGAGTAGAATGCCATGGTTTGAATATGCTTGCTCCAGGGAGTGGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTAGAATGCCATGGTTTGAATATGCTTGCTCCAGGGAGTGGCACA  750

seq1  ACTTGGAAGTGTGGCCTCATTGTAATAAATGTGTCATTGTGGGCATGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAAGTGTGGCCTCATTGTAATAAATGTGTCATTGTGGGCATGGGT  800

seq1  TTTTCTTCCTAGTCTTCCAATAGAAGCCTTCAGATGAAGATATAGAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCTAGTCTTCCAATAGAAGCCTTCAGATGAAGATATAGAATTC  850

seq1  TCAGTTCTGCCTACACCATGCCTGCCTAGATGCTGCCATGATGATAATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCTGCCTACACCATGCCTGCCTAGATGCTGCCATGATGATAATGA  900

seq1  AC-TGAACTCTG-AACCTGTAAG-CCTGCCCCAGAAAAA-TGTCCTTTGT  946
      || ||||||||| |||||||||| ||||||||||||||| ||||||||||
seq2  ACTTGAACTCTGAAACCTGTAAGCCCTGCCCCAGAAAAATTGTCCTTTGT  950

seq1  AAGACTTG-CCTTAGTCATGGTGTCTGTTCACAGCAGTAAAACCCTAAGA  995
      |||||||| ||||||||||||||||||||||||||||| ||||||| |||
seq2  AAGACTTGCCCTTAGTCATGGTGTCTGTTCACAGCAGTTAAACCCT-AGA  999

seq1  CATAGGCTTAAGAGAATATAGTGCTTGTCTTCAACCGCCTTGTAGAAAAA  1045
      ||||||||| |||| |||| ||   ||||||| |||||||||||||||||
seq2  CATAGGCTT-AGAGGATATTGTTGCTGTCTTC-ACCGCCTTGTAGAAAAA  1047

seq1  TGAAGAAGAAAATGTATACATTTTAA-TAT-CAGTAATGGATATAAGACA  1093
      |||||||| ||||||||||||||||| ||| |||| ||||   |||||||
seq2  TGAAGAAG-AAATGTATACATTTTAATTATCCAGT-ATGGTATTAAGACA  1095

seq1  AACCCAACATTTCTGGGCTCTTTCATTCTCAGCTCT-TCTTTTT-  1136
      || |||||| ||||||||||||||  |||||||||| || |||| 
seq2  AA-CCAACA-TTCTGGGCTCTTTCCATCTCAGCTCTCTCCTTTTT  1138


| Home | SequenceCutter | Blast | Download |