BAC Information

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BAC

Clone NameB6Ng01-175N07
Chromosome12 (Build37)
Map Location 86,266,743 - 86,392,289
singlet/doubletdoublet
Overlap gene1110018G07Rik, Fcf1, Ylpm1
Upstream gene2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2
Downstream geneProx2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175N07.bB6Ng01-175N07.g
ACCGA003532GA003533
length1,189376
definitionB6Ng01-175N07.b B6Ng01-175N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,266,743 - 86,267,934)(86,391,908 - 86,392,289)
sequence
gaattctgggtcatccgtttcaaagtactgcggagataggaagacacaaa
gcacatggacaccctttgccatgaatggaactaacttcttgacaccattt
acaccttcaaccttaaaaataatcagctcagggggctggagagacggctc
agaggttaagaacactggctactcttccagaggttctgggaacagaaccc
aaatggaggctcacaaccatctgtaactccagttccaggagactccatgc
tttctactcagtgggcactggatgtatctggtgtacgtacatataagcag
gcaaaacacacatacacacaatacaaataaatctttaaaaataaataaat
aaaaggggaaaaaggacgttagaaaatcagctcatgtggaacaatcccaa
gctagtctgtctttagtgaaattgcatacccaccatgttaccttgtaatg
catacggagtcctatgatttgggccaggaaagaccgagtgaaccgggcac
ggaccaactgcttgtaggctccccctagagaggattcatacaaacacttg
cccaccagccgccctgcaaactcatacatcttcaagcgcaggtgagccgg
gcggttagggttaggatgcacctgtcaaagaaacgaaaacgtctttgacc
atttttcatccattctagctaattctggaaagactcccaaatcctatgca
attaggacctagaatgtcccccaaaggtgtatatatttaaaaagttttgg
tccccaacccagagcaccgtctgtagcgttcaggctactgaggtatgtcc
tggaaagagaacttccaggtctctctctgtctttcatgccctagccctga
ggtgagtatctctccatactctgccactatgatgtgctgcctcaccacaa
acccaaaagcaagaaggctgggccagccataacggaagcctctaaagtct
gtgggttaagtgacatgttctctttataagctggctctctcgggcactta
ttacagtaacagaagctgactcataccatgctagggaataaaatttcagg
tttaagggtcacagagcagacaactggagtgattaagtgactggagacag
cgggcaccgggaggacttagatctggttgtgtgtcctagttgattggagt
acaggggatctgatgctggtcctaaacagagaacttttc
cccaaagtcccagctgtgagtcagccctgcaaattttagagaaactgcca
acagccctaatgacattactagtcaatgtgtaacagggctttttcttttt
tcttttgttttcaagaagaataaaagatagggggttatctgtcagggatc
agacagagggttggaggccttccacccacaccaagcggtgggtggtcttg
gccagaggatatcaattgctacttccctgtgtctgatcctttaggacaga
gcaaactgaaagtaagagagaggagagaggagagaggagagagagagaga
aggaacagattagtcctagacaaggaggtgtaagacaggtggggcagatt
gatgtcgaaacgggggtggggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_86266743_86267934
seq2: B6Ng01-175N07.b_47_1235

seq1  GAATTCTGGGTCATCCGTTTCAAAGTACTGCGGAGATAGGAAGACACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGTCATCCGTTTCAAAGTACTGCGGAGATAGGAAGACACAAA  50

seq1  GCACATGGACACCCTTTGCCATGAATGGAACTAACTTCTTGACACCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGGACACCCTTTGCCATGAATGGAACTAACTTCTTGACACCATTT  100

seq1  ACACCTTCAACCTTAAAAATAATCAGCTCAGGGGGCTGGAGAGACGGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTCAACCTTAAAAATAATCAGCTCAGGGGGCTGGAGAGACGGCTC  150

seq1  AGAGGTTAAGAACACTGGCTACTCTTCCAGAGGTTCTGGGAACAGAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTAAGAACACTGGCTACTCTTCCAGAGGTTCTGGGAACAGAACCC  200

seq1  AAATGGAGGCTCACAACCATCTGTAACTCCAGTTCCAGGAGACTCCATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGGCTCACAACCATCTGTAACTCCAGTTCCAGGAGACTCCATGC  250

seq1  TTTCTACTCAGTGGGCACTGGATGTATCTGGTGTACGTACATATAAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTCAGTGGGCACTGGATGTATCTGGTGTACGTACATATAAGCAG  300

seq1  GCAAAACACACATACACACAATACAAATAAATCTTTAAAAATAAATAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACACACATACACACAATACAAATAAATCTTTAAAAATAAATAAAT  350

seq1  AAAAGGGGAAAAAGGACGTTAGAAAATCAGCTCATGTGGAACAATCCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGGAAAAAGGACGTTAGAAAATCAGCTCATGTGGAACAATCCCAA  400

seq1  GCTAGTCTGTCTTTAGTGAAATTGCATACCCACCATGTTACCTTGTAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTCTGTCTTTAGTGAAATTGCATACCCACCATGTTACCTTGTAATG  450

seq1  CATACGGAGTCCTATGATTTGGGCCAGGAAAGACCGAGTGAACCGGGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGGAGTCCTATGATTTGGGCCAGGAAAGACCGAGTGAACCGGGCAC  500

seq1  GGACCAACTGCTTGTAGGCTCCCCCTAGAGAGGATTCATACAAACACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAACTGCTTGTAGGCTCCCCCTAGAGAGGATTCATACAAACACTTG  550

seq1  CCCACCAGCCGCCCTGCAAACTCATACATCTTCAAGCGCAGGTGAGCCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAGCCGCCCTGCAAACTCATACATCTTCAAGCGCAGGTGAGCCGG  600

seq1  GCGGTTAGGGTTAGGATGCACCTGTCAAAGAAACGAAAACGTCTTTGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTTAGGGTTAGGATGCACCTGTCAAAGAAACGAAAACGTCTTTGACC  650

seq1  ATTTTTCATCCATTCTAGCTAATTCTGGAAAGACTCCCAAATCCTATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCATCCATTCTAGCTAATTCTGGAAAGACTCCCAAATCCTATGCA  700

seq1  ATTAGGACCTAGAATGTCCCCCAAAGGTGTATATATTTAAAAAGTTTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGACCTAGAATGTCCCCCAAAGGTGTATATATTTAAAAAGTTTTGG  750

seq1  TCCCCAACCCAGAGCACCGTCTGTAGCGTTCAGGCTACTGAGGTATGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAACCCAGAGCACCGTCTGTAGCGTTCAGGCTACTGAGGTATGTCC  800

seq1  TGG-AAGAGAACTTCCAGGTCTCTCTCTGTCTTTCATGCCCTAGCCCTGA  849
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGAGAACTTCCAGGTCTCTCTCTGTCTTTCATGCCCTAGCCCTGA  850

seq1  GGTGAGTATCTCTCCATACTCTGCCACTATGATGTGCTGCCTCACCACAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTATCTCTCCATACTCTGCCACTATGATGTGCTGCCTCACCACAA  900

seq1  ACCCAAAAGCAAGAAGGCT-GGCCAGCCATAAACGGAAGCCTCTAAAAGT  948
      ||||||||||||||||||| |||||||||| ||||||||||||| |||||
seq2  ACCCAAAAGCAAGAAGGCTGGGCCAGCCAT-AACGGAAGCCTCT-AAAGT  948

seq1  CTGT-GGTTAAGTGACATGTTCTCTTTATAAGCTGGCTCTCTCGGGCACT  997
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTTAAGTGACATGTTCTCTTTATAAGCTGGCTCTCTCGGGCACT  998

seq1  TATTACAGTAACAGAAAGCTGACTCATACCCAATGCTAAGGGAATAAAAT  1047
      |||||||||||||| |||||||||||||||  ||||| ||||||||||||
seq2  TATTACAGTAACAG-AAGCTGACTCATACC--ATGCT-AGGGAATAAAAT  1044

seq1  TTCA-GTTTAAGGGTCACAGAGCAGACAACT-GAGTGAATTAAAGTGACT  1095
      |||| |||||||||||||||||||||||||| ||||||  | ||||||||
seq2  TTCAGGTTTAAGGGTCACAGAGCAGACAACTGGAGTGA--TTAAGTGACT  1092

seq1  GGAGGACAGCGGCCA-CGGAAGAACCTTAGATCT-GTTGTG-GTCCTTAG  1142
      ||| |||||||| || ||| || | ||||||||| |||||| |||| |||
seq2  GGA-GACAGCGGGCACCGGGAGGA-CTTAGATCTGGTTGTGTGTCC-TAG  1139

seq1  TTGATTTGAGTACAGGTGATCTGATGCCTGTCCCTAAACA-AGAACTTTT  1191
      |||||| ||||||||| ||||||||| |||  |||||||| |||||||||
seq2  TTGATTGGAGTACAGGGGATCTGATG-CTGGTCCTAAACAGAGAACTTTT  1188

seq1  C  1192
      |
seq2  C  1189

seq1: chr12_86391908_86392289
seq2: B6Ng01-175N07.g_69_450 (reverse)

seq1  CCACCCCCCACCCCCGTTTCGACATCAATCTGCCCCACCTGTCTTACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCCACCCCCGTTTCGACATCAATCTGCCCCACCTGTCTTACACC  50

seq1  TCCTTGTCTAGGACTAATCTGTTCCTTCTCTCTCTCTCTCCTCTCTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTCTAGGACTAATCTGTTCCTTCTCTCTCTCTCTCCTCTCTCCTC  100

seq1  TCTCCTCTCTCTTACTTTCAGTTTGCTCTGTCCTAAAGGATCAGACACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTCTCTTACTTTCAGTTTGCTCTGTCCTAAAGGATCAGACACAG  150

seq1  GGAAGTAGCAATTGATATCCTCTGGCCAAGACCACCCACCGCTTGGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAGCAATTGATATCCTCTGGCCAAGACCACCCACCGCTTGGTGTG  200

seq1  GGTGGAAGGCCTCCAACCCTCTGTCTGATCCCTGACAGATAACCCCCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAGGCCTCCAACCCTCTGTCTGATCCCTGACAGATAACCCCCTAT  250

seq1  CTTTTATTCTTCTTGAAAACAAAAGAAAAAAGAAAAAGCCCTGTTACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTCTTCTTGAAAACAAAAGAAAAAAGAAAAAGCCCTGTTACACA  300

seq1  TTGACTAGTAATGTCATTAGGGCTGTTGGCAGTTTCTCTAAAATTTGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTAGTAATGTCATTAGGGCTGTTGGCAGTTTCTCTAAAATTTGCAG  350

seq1  GGCTGACTCACAGCTGGGACTTTGGGGAATTC  382
      ||||||||||||||||||||||||||||||||
seq2  GGCTGACTCACAGCTGGGACTTTGGGGAATTC  382