BAC Information

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BAC

Clone NameB6Ng01-175P02
Chromosome12 (Build37)
Map Location 78,699,272 - 78,829,093
singlet/doubletdoublet
Overlap geneLOC230765
Upstream geneSpnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772, Fut8
Downstream geneLOC666659, EG626215, Gphn, 4921509E07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175P02.bB6Ng01-175P02.g
ACCGA003614GA003615
length907812
definitionB6Ng01-175P02.b B6Ng01-175P02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,828,199 - 78,829,093)(78,699,272 - 78,700,082)
sequence
gaattcctttctctctgtgtaattgtgttgtagggaagggaagtagaagg
gtaggttccggtggagaggatgtctaggcagttggggaactaagccatca
gcagtctctaagggaggacagggctcaaagccaagagcagttacccaaga
ctctcaagagtctagcctgaaggtctgcctcatcgtgccagccctgaacc
cagggaactcaagtggaatccataatccataatcataaatggggattatt
tataagtaatgattaataacaaataaaaacaactttttggctcatctttt
caagttgatacatttgggatattttatacaatgcataattaattataaag
ttgtttgcataaattctggcaaattacttccaccaccaccccctctagtt
ctggggttcatcccaaggtcccctcgtacatgttgttcaaatactgcccc
aatatggttaatctctagcccaaaagacataatttgaatctcagggaagg
tgcttgtacctaatacagcatacacaatcaattcagcatctcctggcact
aggtggtcatatttaataattgcaggaaaaagatcatacaggtttttttt
aatgaatccattgatttatctgtttgttcacttttatccaatttcatgaa
gtgagagggattttaaaaatttcaagttttacttaattaattactactga
gcatctacttggtaacgggcactactagggatgtgaatgaattcaccagt
attcttggctaattttttactgtcaacttgaacccaaccttgagtaacct
ggcgttaagcattcatgctttatttaccttagcccaaggtcactggatat
ggttgtgagaaattaaatttaggccaattggggtgagtcacagcttgtgg
caatttt

gaattcctccccaagatctaaggtagtcgaggaaacagaggcccgtgagg
ttaaatagctcactcaagataatcaaaccagaaagccctagaagctggga
ggttcactcagatgcacactgttccccaggaaaagaaggctggccaggaa
ggtcaggggcagacggatgaagagctgttcccgagtgtggcctactgcag
catgtaaaaggcagagcatcaaacttggcaaacgcctctctggccagtgt
caattaaacaccgtcactccaggagcctgttagtcagaaacttaagcgaa
aaaaggagtgatgctgaagtaagcatgccttctcaaccagttacagcacc
tctgccaaacttgttaggggtgatgccccacatgtttcctgtatggtttg
tagatgaatcggccgagaaagtgccctgggtgcatgtgcacgggcgtgac
atgcacatatacacaaagtgtatatctgagtatatacatgggctatttgc
cattgcatgagcatacaaagaatggaagtagacactggtacttctctacc
ttacttattgagtcagggtttcttactgaacctgaaactcgccacttctg
ctagactggctagccagcaagtcccagggatttgtctgtctaccctctgg
aggttacacaatgttttttttttcttttttcttttacatgagtgctaggt
taatgaaaaataaataaataaaaagaagaaaaggaaaacatgactgctcc
tggctatggtggaggagatggttcattgtagataaaatggagagtgtaat
tagaggggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_78828199_78829093
seq2: B6Ng01-175P02.b_44_950 (reverse)

seq1  AAAATTGCCAC-AGCTGTGACTCA-CCCAATTGGCCT-AATTTAATTTCT  47
      ||||||||||| |||||||||||| |||||||||||| ||||||||||||
seq2  AAAATTGCCACAAGCTGTGACTCACCCCAATTGGCCTAAATTTAATTTCT  50

seq1  CACAACCATATCCAGTGACCTT-GGCT-AGGTAAAT-AAGCATGAATGCT  94
      |||||||||||||||||||||| |||| |||||||| |||||||||||||
seq2  CACAACCATATCCAGTGACCTTGGGCTAAGGTAAATAAAGCATGAATGCT  100

seq1  T-ACGCCAGGTTACTCAAGGTTGGG-TCAAGTTGACAGT-AAAAATTAGC  141
      | ||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  TAACGCCAGGTTACTCAAGGTTGGGTTCAAGTTGACAGTAAAAAATTAGC  150

seq1  C-AGAATACTGGTGAATTCATTCACATCCCTAGTAGTGCCCGTTACCAAG  190
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATACTGGTGAATTCATTCACATCCCTAGTAGTGCCCGTTACCAAG  200

seq1  TAGATGCTCAGTAGTAATTAATTAAGT-AAACTTG-AATTTTTAAAATCC  238
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  TAGATGCTCAGTAGTAATTAATTAAGTAAAACTTGAAATTTTTAAAATCC  250

seq1  CTCTCACTTCATGAAATTGGATAAAAGTGAACAAACAGATAAATCAATGG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACTTCATGAAATTGGATAAAAGTGAACAAACAGATAAATCAATGG  300

seq1  ATTCATTAAAAAAAACCTGTATGATCTTTTTCCTGCAATTATTAAATATG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTAAAAAAAACCTGTATGATCTTTTTCCTGCAATTATTAAATATG  350

seq1  ACCACCTAGTGCCAGGAGATGCTGAATTGATTGTGTATGCTGTATTAGGT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTAGTGCCAGGAGATGCTGAATTGATTGTGTATGCTGTATTAGGT  400

seq1  ACAAGCACCTTCCCTGAGATTCAAATTATGTCTTTTGGGCTAGAGATTAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCACCTTCCCTGAGATTCAAATTATGTCTTTTGGGCTAGAGATTAA  450

seq1  CCATATTGGGGCAGTATTTGAACAACATGTACGAGGGGACCTTGGGATGA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTGGGGCAGTATTTGAACAACATGTACGAGGGGACCTTGGGATGA  500

seq1  ACCCCAGAACTAGAGGGGGTGGTGGTGGAAGTAATTTGCCAGAATTTATG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGAACTAGAGGGGGTGGTGGTGGAAGTAATTTGCCAGAATTTATG  550

seq1  CAAACAACTTTATAATTAATTATGCATTGTATAAAATATCCCAAATGTAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACTTTATAATTAATTATGCATTGTATAAAATATCCCAAATGTAT  600

seq1  CAACTTGAAAAGATGAGCCAAAAAGTTGTTTTTATTTGTTATTAATCATT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGAAAAGATGAGCCAAAAAGTTGTTTTTATTTGTTATTAATCATT  650

seq1  ACTTATAAATAATCCCCATTTATGATTATGGATTATGGATTCCACTTGAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAAATAATCCCCATTTATGATTATGGATTATGGATTCCACTTGAG  700

seq1  TTCCCTGGGTTCAGGGCTGGCACGATGAGGCAGACCTTCAGGCTAGACTC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGGGTTCAGGGCTGGCACGATGAGGCAGACCTTCAGGCTAGACTC  750

seq1  TTGAGAGTCTTGGGTAACTGCTCTTGGCTTTGAGCCCTGTCCTCCCTTAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGTCTTGGGTAACTGCTCTTGGCTTTGAGCCCTGTCCTCCCTTAG  800

seq1  AGACTGCTGATGGCTTAGTTCCCCAACTGCCTAGACATCCTCTCCACCGG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCTGATGGCTTAGTTCCCCAACTGCCTAGACATCCTCTCCACCGG  850

seq1  AACCTACCCTTCTACTTCCCTTCCCTACAACACAATTACACAGAGAGAAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACCCTTCTACTTCCCTTCCCTACAACACAATTACACAGAGAGAAA  900

seq1  GGAATTC  895
      |||||||
seq2  GGAATTC  907


seq1: chr12_78699272_78700082
seq2: B6Ng01-175P02.g_65_876

seq1  GAATTCCTCCCCAAGATCTAAGGTAGTCGAGGAAACAGAGGCCCGTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCCAAGATCTAAGGTAGTCGAGGAAACAGAGGCCCGTGAGG  50

seq1  TTAAATAGCTCACTCAAGATAATCAAACCAGAAAGCCCTAGAAGCTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGCTCACTCAAGATAATCAAACCAGAAAGCCCTAGAAGCTGGGA  100

seq1  GGTTCACTCAGATGCACACTGTTCCCCAGGAAAAGAAGGCTGGCCAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACTCAGATGCACACTGTTCCCCAGGAAAAGAAGGCTGGCCAGGAA  150

seq1  GGTCAGGGGCAGACGGATGAAGAGCTGTTCCCGAGTGTGGCCTACTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGGGCAGACGGATGAAGAGCTGTTCCCGAGTGTGGCCTACTGCAG  200

seq1  CATGTAAAAGGCAGAGCATCAAACTTGGCAAACGCCTCTCTGGCCAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAAAGGCAGAGCATCAAACTTGGCAAACGCCTCTCTGGCCAGTGT  250

seq1  CAATTAAACACCGTCACTCCAGGAGCCTGTTAGTCAGAAACTTAAGCGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAACACCGTCACTCCAGGAGCCTGTTAGTCAGAAACTTAAGCGAA  300

seq1  AAAAGGAGTGATGCTGAAGTAAGCATGCCTTCTCAACCAGTTACAGCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGTGATGCTGAAGTAAGCATGCCTTCTCAACCAGTTACAGCACC  350

seq1  TCTGCCAAACTTGTTAGGGGTGATGCCCCACATGTTTCCTGTATGGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAAACTTGTTAGGGGTGATGCCCCACATGTTTCCTGTATGGTTTG  400

seq1  TAGATGAATCGGCCGAGAAAGTGCCCTGGGTGCATGTGCACGGGCGTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAATCGGCCGAGAAAGTGCCCTGGGTGCATGTGCACGGGCGTGAC  450

seq1  ATGCACATATACACAAAGTGTATATCTGAGTATATACATGGGCTATTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATATACACAAAGTGTATATCTGAGTATATACATGGGCTATTTGC  500

seq1  CATTGCATGAGCATACAAAGAATGGAAGTAGACACTGGTACTTCTCTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCATGAGCATACAAAGAATGGAAGTAGACACTGGTACTTCTCTACC  550

seq1  TTACTTATTGAGTCAGGGTTTCTTACTGAACCTGAAACTCGCCACTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTATTGAGTCAGGGTTTCTTACTGAACCTGAAACTCGCCACTTCTG  600

seq1  CTAGACTGGCTAGCCAGCAAGTCCCAGGGATTTGTCTGTCTACCCTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTGGCTAGCCAGCAAGTCCCAGGGATTTGTCTGTCTACCCTCTGG  650

seq1  AGGTTACACAATGTTTTTTTTTTCTTTTTTCTTTTACATGAGTGCTAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACACAATGTTTTTTTTTTCTTTTTTCTTTTACATGAGTGCTAGGT  700

seq1  TAATGAAAAATAAATAAATAAAAAGAAGAAAAGGAAAACATGACTGCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAAAATAAATAAATAAAAAGAAGAAAAGGAAAACATGACTGCTCC  750

seq1  TGGCTATGGTGGAGGAGATGGTTCATTGTAGATAAAATGGAGAGTGTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATGGTGGAGGAGATGGTTCATTGTAGATAAAATGGAGAGTGTAAT  800

seq1  TAGA-GGGAGGG  811
      |||| |||||||
seq2  TAGAGGGGAGGG  812


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