BAC Information

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BAC

Clone NameB6Ng01-176I02
Chromosome12 (Build37)
Map Location 57,138,770 - 57,299,097
singlet/doubletdoublet
Overlap geneLOC382600, LOC382601
Upstream geneLOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915
Downstream geneMbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176I02.bB6Ng01-176I02.g
ACCGA004023GA004024
length1,059976
definitionB6Ng01-176I02.b B6Ng01-176I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,298,036 - 57,299,097)(57,138,770 - 57,139,737)
sequence
gaattcttctgtcagggtctctgagggagttctacttcaaaaacagattg
ttcactcaaatgggctatgtctagtcaattaaactctgggttgttatcaa
aacacagtgggaataaatagtatggcaggtgatgctatgctgaacagaat
acaaaaaaaatagcaattgtgagccccagaaaacttataattcaaatata
cggaatacatgactactctagtgtataacgtctcagggattgagcaggta
aaaggacggggcatgcatgtttcactctcagggagcatatgaaaatctgc
ctcagaagaactggctggatgggttgtaaagctaaatgagttctctttca
gagtagtgagtagctgctcctctttcttattgctactgagaaattgggct
gaactcaagcgatcaagcattcactatgtattcagggccttgtatttgca
agaagagaattcacgcaaaagtgacacaggcatgaatactgcccttcctc
ccctggcataagacaaggcctagatatttcaagatacacaaagctgctga
aaaatctcaaaccacactattcatgcctatgcacacaacaccatttctag
gcacagttcaacactggacaactcgtgattctagattttttaaatataca
tttatattatagtgcttactgaataaaatgctaaatatcacttagaaatc
taataactccacttgacaatgtgttcttaacaaaccagagctctttactt
acttttgcatctcagtgctctgcaaagtgtaagataatgatgctttgctc
cagcctctgacatctccttccgtgagcagggggctctgccatccataaca
ctcctatcttggcccttctattgtatgtcttattttataaagaaactatg
agaagcaaggggtcttcccttttgctctgcaaaacccaaccagatctgta
cgtgaaatgaccgatagaattttaaaaattaacatgtctcacattagtac
tgcctgtttaacttgtcatattctatatcaccaactagggaaaagatcaa
atacatcta
gaattcagtaggaggcacaggggtgagaaacatgggaggtagggctgcgt
attcattgcttctaattgctgggtctgctgtaggttgccaaagtcttctt
gtcaaattagttcaaatcattgtagtgatccccccttgcccccatggacg
atggattcaacttgttataattgcttcaaagggcagaactgaggacacac
tgtagaagttaaggggaaatcaattttgcttagaattttatgataactaa
agttgttcagtgccacaaaaatacagctttttaaacagctttgattcata
atatgggaattaagggaataaaaacagaatgaccacaactcgtggatgct
cacataaggatcttccactgagaaagagtttggtcccttctactacagag
cttagtattatctctggtgttgttctatggaaaaatttaaaatgcaggca
gcatagcacaagtaagccaggaaaggagatatagagacagtattgaaaag
gacaatagctaaaaagatctccatgtatctttttgttaatatttgtatat
atttgtcatatatttaatgtatttatttatataaattattaaatattaat
ttaaatataataaatggcataaattaattatataaataaattatatttta
tatatttattgataaaataagacatgtcaatattttagtattaacatatt
gatattaaacatatattaacacaataattaacatgataattaaacataac
aatttgttaatatcaagatattaacatatccttatgttaatatcaaaata
tgaacatatctttatgttcatattttttgtttgagatgccagaaaaacat
cccaggctgctttcattttataatgtaccaggcagcagagcacattttga
ggaagagagaattaggagagggtttgaaacgtctcccatttcattaattg
gctctttaccaggccctcagatgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_57298036_57299097
seq2: B6Ng01-176I02.b_43_1101 (reverse)

seq1  TAGATGTATTTGATCTTTTCCCCTAGTTGGTGATTATAGAATTAATGACA  50
      ||||||||||||||||||| ||||||||||||| ||||||||  ||||||
seq2  TAGATGTATTTGATCTTTT-CCCTAGTTGGTGA-TATAGAAT--ATGACA  46

seq1  AGTTAAACAGGCAGTACTAATGTGAGACATGTTAATTTTTAAAATTCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAACAGGCAGTACTAATGTGAGACATGTTAATTTTTAAAATTCTAT  96

seq1  CGGTCATTTCACGTACAGATCTGGTTGGGTTTTGCAGAGCAAAAGGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCATTTCACGTACAGATCTGGTTGGGTTTTGCAGAGCAAAAGGGAAG  146

seq1  ACCCCTTGCTTCTCATAGTTTCTTTATAAAATAAGACATACAATAGAA-G  199
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACCCCTTGCTTCTCATAGTTTCTTTATAAAATAAGACATACAATAGAAGG  196

seq1  GCCAAGATAGGAGTGTTATGGATGGCAGAGCCCCCTGCTCACGGAAGGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGATAGGAGTGTTATGGATGGCAGAGCCCCCTGCTCACGGAAGGAG  246

seq1  ATGTCAGAGGCTGGAGCAAAGCATCATTATCTTACACTTTGCAGAGCACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGAGGCTGGAGCAAAGCATCATTATCTTACACTTTGCAGAGCACT  296

seq1  GAGATGCAAAAGTAAGTAAAGAGCTCTGGTTTGTTAAGAACACATTGTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCAAAAGTAAGTAAAGAGCTCTGGTTTGTTAAGAACACATTGTCA  346

seq1  AGTGGAGTTATTAGATTTCTAAGTGATATTTAGCATTTTATTCAGTAAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGTTATTAGATTTCTAAGTGATATTTAGCATTTTATTCAGTAAGC  396

seq1  ACTATAATATAAATGTATATTTAAAAAATCTAGAATCACGAGTTGTCCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATATAAATGTATATTTAAAAAATCTAGAATCACGAGTTGTCCAG  446

seq1  TGTTGAACTGTGCCTAGAAATGGTGTTGTGTGCATAGGCATGAATAGTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAACTGTGCCTAGAAATGGTGTTGTGTGCATAGGCATGAATAGTGT  496

seq1  GGTTTGAGATTTTTCAGCAGCTTTGTGTATCTTGAAATATCTAGGCCTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAGATTTTTCAGCAGCTTTGTGTATCTTGAAATATCTAGGCCTTG  546

seq1  TCTTATGCCAGGGGAGGAAGGGCAGTATTCATGCCTGTGTCACTTTTGCG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGCCAGGGGAGGAAGGGCAGTATTCATGCCTGTGTCACTTTTGCG  596

seq1  TGAATTCTCTTCTTGCAAATACAAGGCCCTGAATACATAGTGAATGCTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTCTTCTTGCAAATACAAGGCCCTGAATACATAGTGAATGCTTG  646

seq1  ATCGCTTGAGTTCAGCCCAATTTCTCAGTAGCAATAAGAAAGAGGAGCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTTGAGTTCAGCCCAATTTCTCAGTAGCAATAAGAAAGAGGAGCAG  696

seq1  CTACTCACTACTCTGAAAGAGAACTCATTTAGCTTTACAACCCATCCAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCACTACTCTGAAAGAGAACTCATTTAGCTTTACAACCCATCCAGC  746

seq1  CAGTTCTTCTGAGGCAGATTTTCATATGCTCCCTGAGAGTGAAACATGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTTCTGAGGCAGATTTTCATATGCTCCCTGAGAGTGAAACATGCA  796

seq1  TGCCCCGTCCTTTTACCTGCTCAATCCCTGAGACGTTATACACTAGAGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCGTCCTTTTACCTGCTCAATCCCTGAGACGTTATACACTAGAGTA  846

seq1  GTCATGTATTCCGTATATTTGAATTATAAGTTTTCTGGGGCTCACAATTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTATTCCGTATATTTGAATTATAAGTTTTCTGGGGCTCACAATTG  896

seq1  CTATTTTTTTTGTATTCTGTTCAGCATAGCATCACCTGCCATACTATTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTTTTGTATTCTGTTCAGCATAGCATCACCTGCCATACTATTTA  946

seq1  TTCCCACTGTGTTTTGATAACAACCCAGAGTTTAATTGACTAGACATAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACTGTGTTTTGATAACAACCCAGAGTTTAATTGACTAGACATAGC  996

seq1  CCATTTGAGTGAACAATCTGTTTTTGAAGTAGAACTCCCTCAGAGACCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGAGTGAACAATCTGTTTTTGAAGTAGAACTCCCTCAGAGACCCT  1046

seq1  GACAGAAGAATTC  1062
      |||||||||||||
seq2  GACAGAAGAATTC  1059

seq1: chr12_57138770_57139737
seq2: B6Ng01-176I02.g_64_1039

seq1  GAATTCAGTAGGAGGCACAGGGGTGAGAAACATGGGAGGTAGGGCTGCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGGAGGCACAGGGGTGAGAAACATGGGAGGTAGGGCTGCGT  50

seq1  ATTCATTGCTTCTAATTGCTGGGTCTGCTGTAGGTTGCCAAAGTCTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTGCTTCTAATTGCTGGGTCTGCTGTAGGTTGCCAAAGTCTTCTT  100

seq1  GTCAAATTAGTTCAAATCATTGTAGTGATCCCCCCTTGCCCCCATGGACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATTAGTTCAAATCATTGTAGTGATCCCCCCTTGCCCCCATGGACG  150

seq1  ATGGATTCAACTTGTTATAATTGCTTCAAAGGGCAGAACTGAGGACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTCAACTTGTTATAATTGCTTCAAAGGGCAGAACTGAGGACACAC  200

seq1  TGTAGAAGTTAAGGGGAAATCAATTTTGCTTAGAATTTTATGATAACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGTTAAGGGGAAATCAATTTTGCTTAGAATTTTATGATAACTAA  250

seq1  AGTTGTTCAGTGCCACAAAAATACAGCTTTTTAAACAGCTTTGATTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTCAGTGCCACAAAAATACAGCTTTTTAAACAGCTTTGATTCATA  300

seq1  ATATGGGAATTAAGGGAATAAAAACAGAATGACCACAACTCGTGGATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGAATTAAGGGAATAAAAACAGAATGACCACAACTCGTGGATGCT  350

seq1  CACATAAGGATCTTCCACTGAGAAAGAGTTTGGTCCCTTCTACTACAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAGGATCTTCCACTGAGAAAGAGTTTGGTCCCTTCTACTACAGAG  400

seq1  CTTAGTATTATCTCTGGTGTTGTTCTATGGAAAAATTTAAAATGCAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTATTATCTCTGGTGTTGTTCTATGGAAAAATTTAAAATGCAGGCA  450

seq1  GCATAGCACAAGTAAGCCAGGAAAGGAGATATAGAGACAGTATTGAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCACAAGTAAGCCAGGAAAGGAGATATAGAGACAGTATTGAAAAG  500

seq1  GACAATAGCTAAAAAGATCTCCATGTATCTTTTTGTTAATATTTGTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAGCTAAAAAGATCTCCATGTATCTTTTTGTTAATATTTGTATAT  550

seq1  ATTTGTCATATATTTAATGTATTTATTTATATAAATTATTAAATATTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCATATATTTAATGTATTTATTTATATAAATTATTAAATATTAAT  600

seq1  TTAAATATAATAAATGGCATAAATTAATTATATAAATAAATTATATTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATAATAAATGGCATAAATTAATTATATAAATAAATTATATTTTA  650

seq1  TATATTTATTGATAAAATAAGACATGTCAATATTTTAGTATTAACATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTATTGATAAAATAAGACATGTCAATATTTTAGTATTAACATATT  700

seq1  GATATTAAACATATATTAACACAATAATTAACATGATAATTAAACATAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAAACATATATTAACACAATAATTAACATGATAATTAAACATAAC  750

seq1  AATTTGTTAATATCAAGATATTAACATATCCTTATGTTAATATCAAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTAATATCAAGATATTAACATATCCTTATGTTAATATCAAAATA  800

seq1  TGAACATATCTTTATGTTCATA-TTTTTGTTTGAGATGCCAGAAAAACAT  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGAACATATCTTTATGTTCATATTTTTTGTTTGAGATGCCAGAAAAACAT  850

seq1  -CCAGGCTGCTTTCA-TTTATAATGTACCAGGCAGCAGGAGCACA-TTTG  896
       |||||||||||||| ||||||||||||||||||||| ||||||| ||||
seq2  CCCAGGCTGCTTTCATTTTATAATGTACCAGGCAGCA-GAGCACATTTTG  899

seq1  AGGAAGAGAGAAATAGGAGA-GGTTTG-AACGTCTCC--ATTCATTAATT  942
      |||||||||||| ||||||| |||||| |||||||||   ||||||||||
seq2  AGGAAGAGAGAATTAGGAGAGGGTTTGAAACGTCTCCCATTTCATTAATT  949

seq1  GGCTCTTTAACAGGCCCTCAGA-GATT  968
      ||||||||| |||||||||||| ||||
seq2  GGCTCTTTACCAGGCCCTCAGATGATT  976