BAC Information

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BAC

Clone NameB6Ng01-177D15
Chromosome12 (Build37)15 (Build37)
Map Location 96,287,487 - 96,288,424101,765,343 - 101,765,532
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC217786
Downstream geneLOC100039603, LOC667688, Flrt2, 1700019M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177D15.bB6Ng01-177D15.g
ACCGA004554GA004555
length938176
definitionB6Ng01-177D15.b B6Ng01-177D15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,287,487 - 96,288,424)(101,765,343 - 101,765,532)
sequence
gaattcaaatatgcttcataatattcagtctcaagaataagaagtgaatg
ctgtaactaatatatatatatatatatatatatatatatatatatatata
tatatatatatttacatttactttatattaaatatatagtgaagcatagg
tgtgtttgtggacttttttatttcttttatccaaacacagcagtttttcc
ttagagacttgttttcaggccacgcatgctggtaaatctcagtggacagc
catgctaggctcctgcctgtaagcacaacgtggtatcagtatagtgtcag
ggtttggtacctgtgcatgggatggatcccaagttgggccaatcactgga
tagcctttccttcagtctttgctccattttggtaggaccctgtctttacc
aacaaatgtggtctttctgtttcgaaattatggataccaaaccatttagg
ttaacttttatttataacaaagtaaaatgtgtataagtgtatgtatttat
tcgtgtgtgtgtgtatgaaaaaaaaaagatgaaataatactaggcgtggt
ggcacacgcctttaattccagcactcgggaggcagaggcaggaggatttc
tgaggtcgaggccagcctggtctacaaagtgaattccaggacatccaggg
ctatacagaaaaaaaccctgtctcgaaaaaaacgacaacaaaaaaaaaag
tgccttcaaaatatgaacaaatagatgtatgtaattctaccatcttcaaa
gaaaatcttctctttctcttttgttcattacttgaactatctaagaaagc
tcatgtgaaaattatcctaatataattttcttgtatattaggcaccagtc
aaacctttatattaatttaatttggcttgactctaaattaaattatattt
gcatctgaaccatcaaagccggataacttcacgtccag
actgcaggaagtccaggtaatacctcctatgttttgctcagaatatttgt
agttgacaaatgtgtgtgtatgtttgtgcatgtgtgtgtgcgtgtgtgcg
tgcgtgtgtgcgtgcatgtgtgtgtgtgtgtgtgcgtgtgtgtgtttgtg
tatgtgtgtgtgtgtgtatgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_96287487_96288424
seq2: B6Ng01-177D15.b_48_985

seq1  GAATTCAAATATGCTTCATAATATTCAGTCTCAAGAATAAGAAGTGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATATGCTTCATAATATTCAGTCTCAAGAATAAGAAGTGAATG  50

seq1  CTGTAACTAATATATATATATATATATATATATATATATATATATATATA  100
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACTA--ATATATATATATATATATATATATATATATATATATATA  98

seq1  TATATATATATATTTACATTTACTTTATATTAAATATATAGTGAAGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATTTACATTTACTTTATATTAAATATATAGTGAAGCATA  148

seq1  GGTGTGTTTGTGGACTTTTTTATTTCTTTTATCCAAACACAGCAGTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTTTGTGGACTTTTTTATTTCTTTTATCCAAACACAGCAGTTTTT  198

seq1  CCTTAGAGACTTGTTTTCAGGCCACGCATGCTGGTAAATCTCAGTGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAGACTTGTTTTCAGGCCACGCATGCTGGTAAATCTCAGTGGACA  248

seq1  GCCATGCTAGGCTCCTGCCTGTAAGCACAACGTGGTATCAGTATAGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCTAGGCTCCTGCCTGTAAGCACAACGTGGTATCAGTATAGTGTC  298

seq1  AGGGTTTGGTACCTGTGCATGGGATGGATCCCAAGTTGGGCCAATCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTGGTACCTGTGCATGGGATGGATCCCAAGTTGGGCCAATCACTG  348

seq1  GATAGCCTTTCCTTCAGTCTTTGCTCCATTTTGGTAGGACCCTGTCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCTTTCCTTCAGTCTTTGCTCCATTTTGGTAGGACCCTGTCTTTA  398

seq1  CCAACAAATGTGGTCTTTCTGTTTCGAAATTATGGATACCAAACCATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAATGTGGTCTTTCTGTTTCGAAATTATGGATACCAAACCATTTA  448

seq1  GGTTAACTTTTATTTATAACAAAGTAAAATGTGTATAAGTGTATGTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAACTTTTATTTATAACAAAGTAAAATGTGTATAAGTGTATGTATTT  498

seq1  ATTCGTGTGTGTGTGTATGAAAAAAAAAAGATGAAATAATACTAGGCGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTGTGTGTGTGTATGAAAAAAAAAAGATGAAATAATACTAGGCGTG  548

seq1  GTGGCACACGCCTTTAATTCCAGCACTCGGGAGGCAGAGGCAGGAGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACACGCCTTTAATTCCAGCACTCGGGAGGCAGAGGCAGGAGGATT  598

seq1  TCTGAGGTCGAGGCCAGCCTGGTCTACAAAGTGAATTCCAGGACATCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTCGAGGCCAGCCTGGTCTACAAAGTGAATTCCAGGACATCCAG  648

seq1  GGCTATACAGAAAAAAACCCTGTCTCGAAAAAAACGACAACAAAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATACAGAAAAAAACCCTGTCTCGAAAAAAACGACAACAAAAAAAAA  698

seq1  AGTGCCTTCAAAATATGAACAAATAGATGTATGTAATTCTACCATCTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTTCAAAATATGAACAAATAGATGTATGTAATTCTACCATCTTCA  748

seq1  AAGAAAATCTTCTC-TTCTCTTTTG-TCATTAC-TGAACTATCTAAGAAA  797
      |||||||||||||| |||||||||| ||||||| ||||||||||||||||
seq2  AAGAAAATCTTCTCTTTCTCTTTTGTTCATTACTTGAACTATCTAAGAAA  798

seq1  GCTCATGTGAAAATTATCCTAATATAA-TTTCTTGTATATTAGGCACCAG  846
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCTCATGTGAAAATTATCCTAATATAATTTTCTTGTATATTAGGCACCAG  848

seq1  TCAAAACTTTTATATTAATTTAATTTGGCTTGACTCTAAATTAAAATATA  896
      || |||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  TC-AAACCTTTATATTAATTTAATTTGGCTTGACTCTAAATTAAATTATA  897

seq1  TTTGCATCTGAACCAATCAAAGCCGGATAACTTCACGTCCAG  938
      |||||||||||||| |||||||||||||||||||||||||||
seq2  TTTGCATCTGAACC-ATCAAAGCCGGATAACTTCACGTCCAG  938

seq1: chr15_101765343_101765532
seq2: B6Ng01-177D15.g_119_246 (reverse)

seq1  CACACACATACATACACACATACATGCACTCATGTACACAAACACACACA  50
      |||||||||||| ||||||| |||          ||||||||||||||| 
seq2  CACACACATACACACACACACACA----------TACACAAACACACAC-  39

seq1  TACGAACACACACATACAAGCATGCACACACATACATGCATGCACACATG  100
           || ||||||          |||||||| ||||||| ||||||| |
seq2  -----ACGCACACA----------CACACACACACATGCACGCACACACG  74

seq1  CATGCACACACACATATACATGCATGAACACATGCACACACCTATGCAAG  150
      || ||||||||                      ||||||||  ||||   
seq2  CACGCACACAC----------------------GCACACACACATGC---  99

seq1  CACGCATGTATACACACACACACACACTTTTTTCAACTAC  190
                 ||| ||| |||||||| ||| ||||||||
seq2  -----------ACAAACATACACACACATTTGTCAACTAC  128