BAC Information

Click to search

BAC

Clone NameB6Ng01-177N16
Chromosome12 (Build37)
Map Location 120,104,750 - 120,105,541
singlet/doubletsinglet
Overlap geneAbcb5
Upstream geneCdca7l, Dnahc11, Sp4, LOC100042993, LOC668611, EG668615, LOC620665, Sp8
Downstream geneItgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177N16.bB6Ng01-177N16.g
ACCGA005011GA005012
length801570
definitionB6Ng01-177N16.b B6Ng01-177N16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgttcagtcccttatcttagttttggattttcttttattaatct
ccttcttgtggccctggcacattcaaactgtcaaaagctttcacatctga
gatctgtcccatcaacattctgatataggagaacgtttcataagttgctg
ctgctttctgagggttgataggcagtaagtggttgctgtgtgtgtgtgac
attttttttgttagtgggtaagttgcccatgttcttgtaacccctcactt
gagtttctgaaaacaaccccttattaaagtcactgtataacacacaaagg
gacatggaagcagaaaggggactggttgggaagcgggtcagcataagtgg
gtggacaaacgagggtgacacgtgatgaatgtgatcaaagtatgtatgaa
gtgaaaatgtcatgtatgaagatgtcacaatgacatccactactacatat
aactaatatatcttagcaaaataatcttaaaaagagggggactaaagatg
acattatgtactcaagtaagtggaaaccatgactcagttaactaatattg
ctgtttatgtagaatttttaaatcatatattacatattattaagtacata
tgaatttaaataaattgtttgatccaatacagggaagcaattttcactcg
cagaagaaaggatctcttattttaagttagcattcatactttcagtaagc
ggatgcttcataccgaacaccccaaagcttgggattggaatcttcaggaa
gggacttagtcatgtaaaggctctgtactaactgttaggaatcaggagcc
c

ctgatcttcccaagacttttatcatgaatgagtgttgattttgtcaaatg
ctctctccacatctaaggagatgatcatgtggtttttggctttgagtttg
tttatataatggattatgttgatggatttccgtatactaaccatccctgc
atccctggaatcaaacctacttggtcaggatgaatgattgttttgatgtg
ttcttggattcggttagtgagaattttattgagtatttttgcatcgatat
tcataagggaaattggtcttaagttctctatctttgttgggtctttctgt
ggtttaagtatcagagtaattgtggcttcatagaatgaattgggtagggt
accttctgcttctattttgtggaatagtttgtggagaactggaattagat
cttctttgaaggcctgatagaactctgcactaaaccaatctggtcctggg
cttttttgggttgggagactattaatgactgcttctatttctttagggga
tataggactgtttagatcattaacctgatcctgatttaactttggtacct
ggtatctgtctagaaatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_120104750_120105541
seq2: B6Ng01-177N16.b_48_847

seq1  GAATTCTGTTCAGTCCCTTATCTTAGTTTTGGATTTTCTTTTATTAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCAGTCCCTTATCTTAGTTTTGGATTTTCTTTTATTAATCT  50

seq1  CCTTCTTGTGGCCCTGGCACATTCAAACTGTCAAAAGCTTTCACATCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTGTGGCCCTGGCACATTCAAACTGTCAAAAGCTTTCACATCTGA  100

seq1  GATCTGTCCCATCAACATTCTGATATAGGAGAACGTTTCATAAGTTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTCCCATCAACATTCTGATATAGGAGAACGTTTCATAAGTTGCTG  150

seq1  CTGCTTTCTGAGGGTTGATAGGCAGTAAGTGGTTGCTGTGTGTGTGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCTGAGGGTTGATAGGCAGTAAGTGGTTGCTGTGTGTGTGTGAC  200

seq1  ATTTTTTTTGTTAGTGGGTAAGTTGCCCATGTTCTTGTAACCCCTCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTGTTAGTGGGTAAGTTGCCCATGTTCTTGTAACCCCTCACTT  250

seq1  GAGTTTCTGAAAACAACCCCTTATTAAAGTCACTGTATAACACACAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCTGAAAACAACCCCTTATTAAAGTCACTGTATAACACACAAAGG  300

seq1  GACATGGAAGCAGAAAGGGGACTGGTTGGGAAGCGGGTCAGCATAAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGAAGCAGAAAGGGGACTGGTTGGGAAGCGGGTCAGCATAAGTGG  350

seq1  GTGGACAAACGAGGGTGACACGTGATGAATGTGATCAAAGTATGTATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAAACGAGGGTGACACGTGATGAATGTGATCAAAGTATGTATGAA  400

seq1  GTGAAAATGTCATGTATGAAGATGTCACAATGACATCCACTACTACATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATGTCATGTATGAAGATGTCACAATGACATCCACTACTACATAT  450

seq1  AACTAATATATCTTAGCAAAATAATCTTAAAAAGAGGGGGACTAAAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATATATCTTAGCAAAATAATCTTAAAAAGAGGGGGACTAAAGATG  500

seq1  ACATTATGTACTCAAGTAAGTGGAAACCATGACTCAGTTAACTAATATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATGTACTCAAGTAAGTGGAAACCATGACTCAGTTAACTAATATTG  550

seq1  CTGTTTATGTAGAATTTTTAAATCATATATTACATATTATTAAGTACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTATGTAGAATTTTTAAATCATATATTACATATTATTAAGTACATA  600

seq1  TGAATTTAAATAAATTGTTTGATCCAATACAGGGAAGCAATTTTCACTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTAAATAAATTGTTTGATCCAATACAGGGAAGCAATTTTCACTCG  650

seq1  CAGAAG-AAGGATCTCTTATTTTAAGTTAGCATTCATAC-TTCAGTAAGC  698
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGAAGAAAGGATCTCTTATTTTAAGTTAGCATTCATACTTTCAGTAAGC  700

seq1  GGATGCTTCATACCGAACA-CCCAAAGCTTGGGA-TGGAATCTTCAGGAA  746
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  GGATGCTTCATACCGAACACCCCAAAGCTTGGGATTGGAATCTTCAGGAA  750

seq1  -GGAC-TAGTCATGT-AAGGCTCTGTACTAGCTG-TAGGAATCAGGAGCC  792
       |||| ||||||||| |||||||||||||| ||| |||||||||||||||
seq2  GGGACTTAGTCATGTAAAGGCTCTGTACTAACTGTTAGGAATCAGGAGCC  800


| Home | SequenceCutter | Blast | Download |