BAC Information

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BAC

Clone NameB6Ng01-178A13
Chromosome12 (Build37)
Map Location 104,495,445 - 104,648,646
singlet/doubletdoublet
Overlap geneEG544888, Asb2, Otub2, Ddx24
Upstream geneSlc24a4, Rin3, Lgmn, Golga5, Chga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1
Downstream geneD12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178A13.bB6Ng01-178A13.g
ACCGA005139GA005140
length1,1211,047
definitionB6Ng01-178A13.b B6Ng01-178A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,647,526 - 104,648,646)(104,495,445 - 104,496,488)
sequence
gaattcctgttaaggctgctgggagcaactccattttcgtgcttattccc
attgcacatgctctctccatgtcaggatgagcagggcattgtgtcactgc
agagtgacctcaagacccacgagaaagaggagacaagatcactctgggcc
acatagaagttagcacctgagacagagctgtaaggagattcggtcaggct
tctgtggctgtgatggtcacctgggctgttagcaggaacctgggcaaggg
tttcagtagaatctgcattgtttctcactcgtcactgatcacattacagc
ttaagaactgcttcagtaaagtttgctgagaggcccagactcttgatcag
atgaatattttgtgttactgcccccttaggagcggatccgtctagcccga
cagattgaaaaagctgaataccggaacttccaggcttgtctgcacaactc
atggattgagcaggcggcagcagccctagagattgagctagaagaagaga
tgtacaaaggtgcgcctgggcagggcgattgctttcttttagcttttacc
tggttgagaccatccttatttctgtgatcccagcaggagcagcaaggttc
ccttttcttgtcctatggctgctgcttctgtatgggccagataccttggg
cctttcttgtctgtctgacagcctcatggacagcccttggactccatgac
taggaacagatcacaagcagggtatccttgttaatgcagcctgtccttta
ctgtatgattagccgcctgctgtgcctttttcgttcatgtataagacagg
taataaactccgtacctcccaacaaggttgagtaaaggagactaaactcg
atccacttatgcttgaaaactaaaagtatatggcactgctaagtcgtcat
ttatcatggtagttaatgttgaacagcacagcaccttcatgtctcattta
taacttctccaggttctgggcatgagttgagtgggagcgattgtcctttt
acatgaggataaagagatagaggagtgcacagagccaggcagtgtagact
tgcctttattcccaggagggacaggttagatttctgtggagttcaagcca
gccttgtctacgaagctagtt
gaattctacagcttcttgtttacagtgggattttctgggaatggctgctg
cctggaaacctgtctggctctgggctttgtagatctttcagggagggagg
gctttgccatttactttagttagaaatgtcagaagcacccaggagcttgg
agacctaccgctcacaccagcaccagccagccgggcacacagcttgttcc
tgatgactttcggaagtgcacagctttctcggggtctgatgtagaaagat
cagttggggttcacagctctttaaatactgttacgaacctccctcacttg
gctttcaaaaagcatgtctgccttgaaggctctgtaccaccaggcctcca
gccctgggggtcagaatggttaaacaaggtccctgccttccttctaatga
gcctatggtgctgttcatggtcaaaccaccacagcctggaacccattatg
caaatgagggggtggggtggatcatgtaccatacccaggggcaggcattg
gctcctcaaggggacgtcacaatggattgtcttagcagcagccatataca
tcatttgggtggctctctagtttcttttttgctttttttttattaatatt
ttctattacatactttcctcaattacatttccaatgctatcccaaaagtc
ccccataccctcccccccacttccctactagtttctaagaaaccttgtgg
tgccttggactgagttctaatctgataggtgaaactggagtcgctaggtt
tacacaggggttgtcaaatgtccttttccctgcaaatgggatttctggtg
agattcctagaagaatacagatttcctgttgaggaggaagatgggccttt
gtttcgttgtgctacagctcttccttcgagccagatgcctgaatgagggc
tcctttccctttctcgggtccccagattctccctgcctttctcagccatg
tccagaggagaattaaggatgtaagtgagactggtggcctgagtgtgccc
tggtccttgatggacagcttgacccagaagcctcatagttcaggact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_104647526_104648646
seq2: B6Ng01-178A13.b_31_1151 (reverse)

seq1  AACTAGCTCTGTAGACAAGGCTGGCCTTGAACT-CACAGAAATCT-ACCT  48
      ||||||||  |||||||||||||| |||||||| ||||||||||| ||||
seq2  AACTAGCTTCGTAGACAAGGCTGG-CTTGAACTCCACAGAAATCTAACCT  49

seq1  GTCCCTCCTGGGATTAAAGGCAAGTCTACCACTGCCTGGCTCTGTGCACT  98
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  GTCCCTCCTGGGAATAAAGGCAAGTCTA-CACTGCCTGGCTCTGTGCACT  98

seq1  CCTCTATCTCTTTATCCCTCATGTAAAAGGACAATCGCTCCCACTCAACT  148
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCTCTATCTCTTTAT-CCTCATGTAAAAGGACAATCGCTCCCACTCAACT  147

seq1  CATGCCCAGAACCTGGAGAAGTTATAAATGAGACATGAAGGTGCTGTGCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCAGAACCTGGAGAAGTTATAAATGAGACATGAAGGTGCTGTGCT  197

seq1  GTTCAACATTAACTACCATGATAAATGACGACTTAGCAGTGCCATATACT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACATTAACTACCATGATAAATGACGACTTAGCAGTGCCATATACT  247

seq1  TTTAGTTTTCAAGCATAAGTGGATCGAGTTTAGTCTCCTTTACTCAACCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTTCAAGCATAAGTGGATCGAGTTTAGTCTCCTTTACTCAACCT  297

seq1  TGTTGGGAGGTACGGAGTTTATTACCTGTCTTATACATGAACG-AAAAGG  347
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTTGGGAGGTACGGAGTTTATTACCTGTCTTATACATGAACGAAAAAGG  347

seq1  CACAGCAGGCGGCTAATCATACAGTAAAGGACAGGCTGCATTAACAAGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGGCGGCTAATCATACAGTAAAGGACAGGCTGCATTAACAAGGA  397

seq1  TACCCTGCTTGTGATCTGTTCCTAGTCATGGAGTCCAAGGGCTGTCCATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGCTTGTGATCTGTTCCTAGTCATGGAGTCCAAGGGCTGTCCATG  447

seq1  AGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGAAG  497

seq1  CAGCAGCCATAGGACAAGAAAAGGGAACCTTGCTGCTCCTGCTGGGATCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCATAGGACAAGAAAAGGGAACCTTGCTGCTCCTGCTGGGATCA  547

seq1  CAGAAATAAGGATGGTCTCAACCAGGTAAAAGCTAAAAGAAAGCAATCGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAAGGATGGTCTCAACCAGGTAAAAGCTAAAAGAAAGCAATCGC  597

seq1  CCTGCCCAGGCGCACCTTTGTACATCTCTTCTTCTAGCTCAATCTCTAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCAGGCGCACCTTTGTACATCTCTTCTTCTAGCTCAATCTCTAGG  647

seq1  GCTGCTGCCGCCTGCTCAATCCATGAGTTGTGCAGACAAGCCTGGAAGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCCGCCTGCTCAATCCATGAGTTGTGCAGACAAGCCTGGAAGTT  697

seq1  CCGGTATTCAGCTTTTTCAATCTGTCGGGCTAGACGGATCCGCTCCTAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTATTCAGCTTTTTCAATCTGTCGGGCTAGACGGATCCGCTCCTAAG  747

seq1  GGGGCAGTAACACAAAATATTCATCTGATCAAGAGTCTGGGCCTCTCAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGTAACACAAAATATTCATCTGATCAAGAGTCTGGGCCTCTCAGC  797

seq1  AAACTTTACTGAAGCAGTTCTTAAGCTGTAATGTGATCAGTGACGAGTGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTACTGAAGCAGTTCTTAAGCTGTAATGTGATCAGTGACGAGTGA  847

seq1  GAAACAATGCAGATTCTACTGAAACCCTTGCCCAGGTTCCTGCTAACAGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATGCAGATTCTACTGAAACCCTTGCCCAGGTTCCTGCTAACAGC  897

seq1  CCAGGTGACCATCACAGCCACAGAAGCCTGACCGAATCTCCTTACAGCTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGACCATCACAGCCACAGAAGCCTGACCGAATCTCCTTACAGCTC  947

seq1  TGTCTCAGGTGCTAACTTCTATGTGGCCCAGAGTGATCTTGTCTCCTCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGGTGCTAACTTCTATGTGGCCCAGAGTGATCTTGTCTCCTCTT  997

seq1  TCTCGTGGGTCTTGAGGTCACTCTGCAGTGACACAATGCCCTGCTCATCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTGGGTCTTGAGGTCACTCTGCAGTGACACAATGCCCTGCTCATCC  1047

seq1  TGACATGGAGAGAGCATGTGCAATGGGAATAAGCACGAAAATGGAGTTGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGGAGAGAGCATGTGCAATGGGAATAAGCACGAAAATGGAGTTGC  1097

seq1  TCCCAGCAGCCTTAACAGGAATTC  1121
      ||||||||||||||||||||||||
seq2  TCCCAGCAGCCTTAACAGGAATTC  1121

seq1: chr12_104495445_104496488
seq2: B6Ng01-178A13.g_65_1111

seq1  GAATTCTACAGCTTCTTGTTTACAGTGGGATTTTCTGGGAATGGCTGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGCTTCTTGTTTACAGTGGGATTTTCTGGGAATGGCTGCTG  50

seq1  CCTGGAAACCTGTCTGGCTCTGGGCTTTGTAGATCTTTCAGGGAGGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAACCTGTCTGGCTCTGGGCTTTGTAGATCTTTCAGGGAGGGAGG  100

seq1  GCTTTGCCATTTACTTTAGTTAGAAATGTCAGAAGCACCCAGGAGCTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCCATTTACTTTAGTTAGAAATGTCAGAAGCACCCAGGAGCTTGG  150

seq1  AGACCTACCGCTCACACCAGCACCAGCCAGCCGGGCACACAGCTTGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTACCGCTCACACCAGCACCAGCCAGCCGGGCACACAGCTTGTTCC  200

seq1  TGATGACTTTCGGAAGTGCACAGCTTTCTCGGGGTCTGATGTAGAAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACTTTCGGAAGTGCACAGCTTTCTCGGGGTCTGATGTAGAAAGAT  250

seq1  CAGTTGGGGTTCACAGCTCTTTAAATACTGTTACGAACCTCCCTCACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGGGTTCACAGCTCTTTAAATACTGTTACGAACCTCCCTCACTTG  300

seq1  GCTTTCAAAAAGCATGTCTGCCTTGAAGGCTCTGTACCACCAGGCCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAAAAAGCATGTCTGCCTTGAAGGCTCTGTACCACCAGGCCTCCA  350

seq1  GCCCTGGGGGTCAGAATGGTTAAACAAGGTCCCTGCCTTCCTTCTAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGGGGTCAGAATGGTTAAACAAGGTCCCTGCCTTCCTTCTAATGA  400

seq1  GCCTATGGTGCTGTTCATGGTCAAACCACCACAGCCTGGAACCCATTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATGGTGCTGTTCATGGTCAAACCACCACAGCCTGGAACCCATTATG  450

seq1  CAAATGAGGGGGTGGGGTGGATCATGTACCATACCCAGGGGCAGGCATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGGGGGTGGGGTGGATCATGTACCATACCCAGGGGCAGGCATTG  500

seq1  GCTCCTCAAGGGGACGTCACAATGGATTGTCTTAGCAGCAGCCATATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCAAGGGGACGTCACAATGGATTGTCTTAGCAGCAGCCATATACA  550

seq1  TCATTTGGGTGGCTCTCTAGTTTCTTTTTTGCTTTTTTTTTATTAATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGGGTGGCTCTCTAGTTTCTTTTTTGCTTTTTTTTTATTAATATT  600

seq1  TTCTATTACATACTTTCCTCAATTACATTTCCAATGCTATCCCAAAAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTACATACTTTCCTCAATTACATTTCCAATGCTATCCCAAAAGTC  650

seq1  CCCCATACCCTCCCCCCCACTTCCCTACTAGTTTCTAAGAAACCTTGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATACCCTCCCCCCCACTTCCCTACTAGTTTCTAAGAAACCTTGTGG  700

seq1  TGCCTTGGACTGAGTTCTAATCTGATAGGTGAAACTGGAGTCGCTAGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGGACTGAGTTCTAATCTGATAGGTGAAACTGGAGTCGCTAGGTT  750

seq1  TACACAGGGGTTGTCAAATGTCC-TTTCCCTGCAAATGGGATTTCTGGTG  799
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TACACAGGGGTTGTCAAATGTCCTTTTCCCTGCAAATGGGATTTCTGGTG  800

seq1  AGATTCCTAGAAGAATACAGATTTCCTGTTGAGGAGGAAGATGGGCCTT-  848
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGATTCCTAGAAGAATACAGATTTCCTGTTGAGGAGGAAGATGGGCCTTT  850

seq1  -GTTCGTTGTGCTACAGCTCTTCCTTCGAGCCAGATGCCTGAATGAGGGG  897
        |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTTTCGTTGTGCTACAGCTCTTCCTTCGAGCCAGATGCCTGAATGA-GGG  899

seq1  CTCCTTTCCCTTCCTCGGGTCCCCAGATTCTCCCTGCCTTTCTCAGCCAT  947
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCCCTTTCTCGGGTCCCCAGATTCTCCCTGCCTTTCTCAGCCAT  949

seq1  GTCCAGGAGGAGAATTAAGGATGTAAGTGAGACTGGTGGGCTGAGTGTGC  997
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTCCA-GAGGAGAATTAAGGATGTAAGTGAGACTGGTGGCCTGAGTGTGC  998

seq1  CCT-GTCC-TGATGGACAGCTTGACCCAAGAGCCTCATAGTTCAGGATT  1044
      ||| |||| |||||||||||||||||||  ||||||||||||||||| |
seq2  CCTGGTCCTTGATGGACAGCTTGACCCAGAAGCCTCATAGTTCAGGACT  1047