BAC Information

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BAC

Clone NameB6Ng01-178K15
Chromosome12 (Build37)
Map Location 67,158,864 - 67,305,156
singlet/doubletdoublet
Overlap genenone
Upstream genePrpf39, Fkbp3, Fancm, C79407, Wdr20b
Downstream geneLOC100040700, EG238217, Mdga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178K15.bB6Ng01-178K15.g
ACCGA005586GA005587
length1,0031,149
definitionB6Ng01-178K15.b B6Ng01-178K15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,304,621 - 67,305,156)(67,158,864 - 67,160,007)
sequence
gaattccctgaaaagcaaactggaccacagatctctgtgattcaggatat
atctcactgcgttcaagttatgcatcccattagaaacaaacgtaaaaact
cttaggttgtaattattacacataatacattttgaaaatgtggatctatg
ttattatttgaaagcagaagtagattacaataataaaaaaaaacctcggc
agattcaagaagagctggtgagatggctcagtgctaccaacccagactga
gcgtcacttgttactcagcctgacaaatgggtttgaaaatgaaaagaaag
aaccacttccttcccgaaagttctccattgacctctatgtattcgcctgc
acacactgacatatgtacacacaagcgcgcacacacacacactaatcaag
gtgaaaataagtcaaggtctcaaattgaaaactcaaagtaatctaagata
aacattagtgtcgtcaaagaaagggctgatacacaatgcaaagtttatat
aagcttgacttagctcaggctgacagcgcaataccagggactgggtgctg
cctataaaagtaatgtattttttcataattctggcatctgcaaagtccaa
agccaaggttcatttcttgttaaaagccttctgtccagctttcagaactt
tttactctatttatattggaagagagatactcctgttcacttgaatgtct
ctcattcctaattaaactccactggcccatctccaaataccatcacattg
aggactatgtctcaacatatgtgaggagcgggtgtggcggcagtcccaaa
ggcaccagggactgcagctaagtcgtatgacttgcacctgacttcctcat
ataagccacaaacatcttgagagctgtgcaggtgtaccaggataccaata
cctgtgaatccattttgatggagatatgcccctgctgccctgattagctg
aagctgtgtgcctggtgaggtggcgtggcctgctgtgcatggatgggaac
tga

gaattcccaacttctccagtcatcaccatcactgtgtcaagtgtttttat
acaagaagagcaacattaaaattaaatgtaatctaaaaatgcaaggataa
ttaaagcacttcaaatacctcacattcataggggtttttaattgatactc
tcatttcaagattttagctaactaaatgtgccaataattaaattattgtt
gtttagctgcaaagccactgtccttgccctagactctgcaacttgacttc
tacaaattccattttccttggatacttggaatcctatgtgtacacacaag
gtcactgagtggtgacagttagaaagacacacagagagagagagagagag
agagagacagagacagaggcagaggcagagccagagacagacagagaggg
acagagatactacttgcacatacatagcatcagcgccctcatagctacca
tagttgcttgtttgtttggctttcaccatccacatttattgcattccctg
taaatctctgccacactccacaggaactttgttggtttcctcatgaggca
ggagcagaatctcttaccaacttctgtctgcagaaatgtgctgtttcatc
tctgtagtctttggctgctctttgctccattagaattaacagatatacgc
gtttacttttctttataataattgaataattactcaactagcattttttc
ttttgaacttatgtgtaaagagataaattatcacataagatattataaat
agaaattaaggctacaatggcattctaattaattttaaataaatgcagca
ttcaaaaccagagacaatttccactacactctcccattttatgctgggtt
gattgtttcccttatttaagccaacagctgcatttggtatttgctgatac
tccacataaataaggcggatcttaagactgttttcaaggcattgggtttg
tggagagtgaattctttccatcagtaatctcttatgataattagctgaat
atgtgtgtcttatggtttagatcaacattggtagaagaaaataaatgcat
tatcttctaaagccttaatgacatttctggtgagtttggataggaagaaa
ggctggagttcacttatggtagaaaaattaaatgaaggaggggactgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_67304621_67305156
seq2: B6Ng01-178K15.b_44_579 (reverse)

seq1  TGGTATTGCGCTGTCAGCCTGAGCTAAGTCAAGCTTATATAAACTTTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTGCGCTGTCAGCCTGAGCTAAGTCAAGCTTATATAAACTTTGCA  50

seq1  TTGTGTATCAGCCCTTTCTTTGACGACACTAATGTTTATCTTAGATTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATCAGCCCTTTCTTTGACGACACTAATGTTTATCTTAGATTACT  100

seq1  TTGAGTTTTCAATTTGAGACCTTGACTTATTTTCACCTTGATTAGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTTCAATTTGAGACCTTGACTTATTTTCACCTTGATTAGTGTGT  150

seq1  GTGTGTGCGCGCTTGTGTGTACATATGTCAGTGTGTGCAGGCGAATACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCGCGCTTGTGTGTACATATGTCAGTGTGTGCAGGCGAATACAT  200

seq1  AGAGGTCAATGGAGAACTTTCGGGAAGGAAGTGGTTCTTTCTTTTCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCAATGGAGAACTTTCGGGAAGGAAGTGGTTCTTTCTTTTCATTT  250

seq1  TCAAACCCATTTGTCAGGCTGAGTAACAAGTGACGCTCAGTCTGGGTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCCATTTGTCAGGCTGAGTAACAAGTGACGCTCAGTCTGGGTTGG  300

seq1  TAGCACTGAGCCATCTCACCAGCTCTTCTTGAATCTGCCGAGGTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTGAGCCATCTCACCAGCTCTTCTTGAATCTGCCGAGGTTTTTTT  350

seq1  TTATTATTGTAATCTACTTCTGCTTTCAAATAATAACATAGATCCACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTGTAATCTACTTCTGCTTTCAAATAATAACATAGATCCACATT  400

seq1  TTCAAAATGTATTATGTGTAATAATTACAACCTAAGAGTTTTTACGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATGTATTATGTGTAATAATTACAACCTAAGAGTTTTTACGTTTG  450

seq1  TTTCTAATGGGATGCATAACTTGAACGCAGTGAGATATATCCTGAATCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATGGGATGCATAACTTGAACGCAGTGAGATATATCCTGAATCAC  500

seq1  AGAGATCTGTGGTCCAGTTTGCTTTTCAGGGAATTC  536
      ||||||||||||||||||||||||||||||||||||
seq2  AGAGATCTGTGGTCCAGTTTGCTTTTCAGGGAATTC  536


seq1: chr12_67158864_67160007
seq2: B6Ng01-178K15.g_67_1215

seq1  GAATTCCCAACTTCTCCAGTCATCACCATCACTGTGTCAAGTGTTTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAACTTCTCCAGTCATCACCATCACTGTGTCAAGTGTTTTTAT  50

seq1  ACAAGAAGAGCAACATTAAAATTAAATGTAATCTAAAAATGCAAGGATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGAGCAACATTAAAATTAAATGTAATCTAAAAATGCAAGGATAA  100

seq1  TTAAAGCACTTCAAATACCTCACATTCATAGGGGTTTTTAATTGATACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCACTTCAAATACCTCACATTCATAGGGGTTTTTAATTGATACTC  150

seq1  TCATTTCAAGATTTTAGCTAACTAAATGTGCCAATAATTAAATTATTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCAAGATTTTAGCTAACTAAATGTGCCAATAATTAAATTATTGTT  200

seq1  GTTTAGCTGCAAAGCCACTGTCCTTGCCCTAGACTCTGCAACTTGACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCTGCAAAGCCACTGTCCTTGCCCTAGACTCTGCAACTTGACTTC  250

seq1  TACAAATTCCATTTTCCTTGGATACTTGGAATCCTATGTGTACACACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATTCCATTTTCCTTGGATACTTGGAATCCTATGTGTACACACAAG  300

seq1  GTCACTGAGTGGTGACAGTTAGAAAGACACACAGAGAGAGAGAGAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGAGTGGTGACAGTTAGAAAGACACACAGAGAGAGAGAGAGAGAG  350

seq1  AGAGAGACAGAGACAGAGGCAGAGGCAGAGCCAGAGACAGACAGAGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAGAGACAGAGGCAGAGGCAGAGCCAGAGACAGACAGAGAGGG  400

seq1  ACAGAGATACTACTTGCACATACATAGCATCAGCGCCCTCATAGCTACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATACTACTTGCACATACATAGCATCAGCGCCCTCATAGCTACCA  450

seq1  TAGTTGCTTGTTTGTTTGGCTTTCACCATCCACATTTATTGCATTCCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGCTTGTTTGTTTGGCTTTCACCATCCACATTTATTGCATTCCCTG  500

seq1  TAAATCTCTGCCACACTCCACAGGAACTTTGTTGGTTTCCTCATGAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTCTGCCACACTCCACAGGAACTTTGTTGGTTTCCTCATGAGGCA  550

seq1  GGAGCAGAATCTCTTACCAACTTCTGTCTGCAGAAATGTGCTGTTTCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGAATCTCTTACCAACTTCTGTCTGCAGAAATGTGCTGTTTCATC  600

seq1  TCTGTAGTCTTTGGCTGCTCTTTGCTCCATTAGAATTAACAGATATACGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGTCTTTGGCTGCTCTTTGCTCCATTAGAATTAACAGATATACGC  650

seq1  GTTTACTTTTCTTTATAATAATTGAATAATTACTCAACTAGCATTTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTTTTCTTTATAATAATTGAATAATTACTCAACTAGCATTTTTTC  700

seq1  TTTTGAACTTATGTGTAAAGAGATAAATTATCACATAAGATATTATAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAACTTATGTGTAAAGAGATAAATTATCACATAAGATATTATAAAT  750

seq1  AGAAATTAAGGCTACAATGGCATTCTAATTAATTTTAAATAAATGCAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTAAGGCTACAATGGCATTCTAATTAATTTTAAATAAATGCAGCA  800

seq1  TTCAAAACCAGAGACAATTTCCACTACACTCTCCCATTTTATGCT-GGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCAAAACCAGAGACAATTTCCACTACACTCTCCCATTTTATGCTGGGTT  850

seq1  GATTGTTTCCCTTATTTAAGCCAACAGCTGCATTTGGTATTTGCTGATAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTTCCCTTATTTAAGCCAACAGCTGCATTTGGTATTTGCTGATAC  900

seq1  TCCACATAAATAAGGCGGATCTTAAGACTG-TTTCAAGGCATT-GGTTTG  947
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  TCCACATAAATAAGGCGGATCTTAAGACTGTTTTCAAGGCATTGGGTTTG  950

seq1  TGGAGAGTTGATTCTTTCCATCAGTAATCTCTTATGATAATTAGCTGATA  997
      ||||||||  ||||||||||||||||||||||||||||||||||||||  
seq2  TGGAGAGTGAATTCTTTCCATCAGTAATCTCTTATGATAATTAGCTGAAT  1000

seq1  TTGTGTTGTCTTATGTTTTAGATC-ACATT-GTAGAAG-AAATAAATGCA  1044
       |||| ||||||||| |||||||| ||||| ||||||| |||||||||||
seq2  ATGTG-TGTCTTATGGTTTAGATCAACATTGGTAGAAGAAAATAAATGCA  1049

seq1  TTATCTTCTAAAG-CTTAATGACATTTCTGTTGAGTTTTGATAGGAA-AG  1092
      ||||||||||||| |||||||||||||||| ||||||| |||||||| | 
seq2  TTATCTTCTAAAGCCTTAATGACATTTCTGGTGAGTTTGGATAGGAAGAA  1099

seq1  AAGCTGGAGTTCACTTTATGGTAGAAAAAAATAAAAGGAGGGAGGGACTG  1142
      | |||||||||||| ||||||||| ||||| |||| | |||  |||||||
seq2  AGGCTGGAGTTCAC-TTATGGTAG-AAAAATTAAATGAAGGAGGGGACTG  1147

seq1  TG  1144
      ||
seq2  TG  1149


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