BAC Information

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BAC

Clone NameB6Ng01-178P11
Chromosome12 (Build37)
Map Location 77,220,516 - 77,221,707
singlet/doubletsinglet
Overlap geneEsr2
Upstream geneKcnh5, Rhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2
Downstream geneLOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178P11.bB6Ng01-178P11.g
ACCGA005812GA005813
length1,2081,155
definitionB6Ng01-178P11.b B6Ng01-178P11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctccacatttttggaagataggtgggaaacagggagaaggagtg
accggctcttgtagtacaaggccaattggcttttttatttgggtgggagg
cagtgaagggcttgccctttcaatagtacgtctccaatctctctcccccc
tattaattaagttaaataaggcaacgcttaactgaggtgatcaaatgatt
ttctcatccgtagatgagtgggcttttaaccttggcttgggtggacatgg
acccgattcctcccgtgggtaaaacccacacatgtggctcttggtacctt
ttggggaggcgaggtagagccggagaatattttttatttttaaccaaaat
ttggtaccaacctctttcaaaccgggtttatctcacaggaaactcagaaa
tggtcaagccggaccttcccttgcagtaagtatctctgcaccaagcggtg
cccatactgaatttgtacaatcacaaaccagtatgcacagttctgagtgc
tgtgcagctcctaaaggagaattatcaacctcagaattagcaaagcctaa
gcaagaattatgtcgttagtaacaccacgatttgtggctaaaataggagc
tggaagtcgttcctcctcatccctgttttttccacagcctattgagctaa
ggacaccttgcagtaacagcaagggtgaaaagccagaggtcagctaaggg
gctaagcctgtctatcaaaataaaaaccaatctttattaatatggaaata
tctactcttctagccctctaggtaaacctaaatttttaactcagactgaa
aaccacgtgctggaaatgtcctgagactgggggtaacagctgccacctgt
gtgctctagggggggcagggatgcacatccactggtccgcctcgggaatg
ttgatttacctgcttgaagacaaaatcttgaaagacagtgagaaagtaag
gaagcagaactttctttcggggaagtctaggtactttattcaatgcaatg
taaagctgagctagtctcctgcctctgtcggagctggttcagagagtagc
tgggagacctacagcttggagagctgttgcctctcagctgaatttaaagc
tcaaaggaatttagttcttaaatgataccttaacagaagagttcgaactg
gatctactggaccgataactcttctgggcaggcaccggcgcttcaatctt
catctcta
gaattcaaggctaactaatggccactggaacatacacttatctgagtata
cataggacttggcacagaatggtgcttgaccacccgggttcaaatggata
ccttcctaagctatccaaatccaaccaagaacttcattgtgtgctaacta
gacaatagcttagagctaattcgagttgttttgttattcctatctggcag
tctctttaaaaaacaaaatttttcaaggctgcctttgcgtcccacttcct
gccctccaacccttgacctgtgtctatagtggagtgctttctgcacggat
acactcgggttataacactgaactaatagtttccaactgcctctgaaccg
ccagcacctgtgtgttcccatgcccgtgtgtgtctgagacagctgctaga
gtcagctttagcaacagcgtatcaatatcaaaattaagacatattcaagt
tctctctcgttaactgtaatcttcctaatgaatgactcagtaaatacagg
atgtactgaccaaaaaacaaaaaacctctattttcaaaggaaagtatcct
gagtactgtatccccaggttttatttaaaaacatccaatcggcatgatcg
tttaattgcttacttccaaagtagagctattacacattttgtgaatttgc
catgttcctataaatgtgtctgaaaactccagtttctaaaatgtgcatta
gagtcaccacttcaaagggctttcgccttagctcccattatattccatta
gaaagaactaatgtgtttaccaagcttcttcttcacccagcccatctcac
gaacgttctgataagaaaatattttaagagacttataggttagaggagaa
aatttttgctataaatgattacccctaaataactctttttgaaggtgctt
ttttttttttaatgtgttcaagtgcatggtggttgaatatgcttgggcca
tgggaagtgcactcttagagtatggccttgttagaaataggtatggctat
tggagagtgtgtcactgtgtcgatgggctttgaagctctcttgctgctgt
gagaacaaagccatctctgctgcttcgatcaaaatgtagatctcaggctc
tcagcacaatctcgattcgcagcttctgctaatgagactgaacctctgaa
cctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_77220516_77221707
seq2: B6Ng01-178P11.g_66_1220

seq1  GAATTCAAGGCTAACTAATGGCCACTGGAACATACACTTATCTGAGTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCTAACTAATGGCCACTGGAACATACACTTATCTGAGTATA  50

seq1  CATAGGACTTGGCACAGAATGGTGCTTGACCACCCGGGTTCAAATGGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGACTTGGCACAGAATGGTGCTTGACCACCCGGGTTCAAATGGATA  100

seq1  CCTTCCTAAGCTATCCAAATCCAACCAAGAACTTCATTGTGTGCTAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTAAGCTATCCAAATCCAACCAAGAACTTCATTGTGTGCTAACTA  150

seq1  GACAATAGCTTAGAGCTAATTCGAGTTGTTTTGTTATTCCTATCTGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAGCTTAGAGCTAATTCGAGTTGTTTTGTTATTCCTATCTGGCAG  200

seq1  TCTCTTTAAAAAACAAAATTTTTCAAGGCTGCCTTTGCGTCCCACTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTAAAAAACAAAATTTTTCAAGGCTGCCTTTGCGTCCCACTTCCT  250

seq1  GCCCTCCAACCCTTGACCTGTGTCTATAGTGGAGTGCTTTCTGCACGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCAACCCTTGACCTGTGTCTATAGTGGAGTGCTTTCTGCACGGAT  300

seq1  ACACTCGGGTTATAACACTGAACTAATAGTTTCCAACTGCCTCTGAACCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCGGGTTATAACACTGAACTAATAGTTTCCAACTGCCTCTGAACCG  350

seq1  CCAGCACCTGTGTGTTCCCATGCCCGTGTGTGTCTGAGACAGCTGCTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACCTGTGTGTTCCCATGCCCGTGTGTGTCTGAGACAGCTGCTAGA  400

seq1  GTCAGCTTTAGCAACAGCGTATCAATATCAAAATTAAGACATATTCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTTTAGCAACAGCGTATCAATATCAAAATTAAGACATATTCAAGT  450

seq1  TCTCTCTCGTTAACTGTAATCTTCCTAATGAATGACTCAGTAAATACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCGTTAACTGTAATCTTCCTAATGAATGACTCAGTAAATACAGG  500

seq1  ATGTACTGACCAAAAAACAAAAAACCTCTATTTTCAAAGGAAAGTATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTGACCAAAAAACAAAAAACCTCTATTTTCAAAGGAAAGTATCCT  550

seq1  GAGTACTGTATCCCCAGGTTTTATTTAAAAACATCCAATCGGCATGATCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTGTATCCCCAGGTTTTATTTAAAAACATCCAATCGGCATGATCG  600

seq1  TTTAATTGCTTACTTCCAAAGTAGAGCTATTACACATTTTGTGAATTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGCTTACTTCCAAAGTAGAGCTATTACACATTTTGTGAATTTGC  650

seq1  CATGTTCCTATAAATGTGTCTGAAAACTCCAGTTTCTAAAATGTGCATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCCTATAAATGTGTCTGAAAACTCCAGTTTCTAAAATGTGCATTA  700

seq1  GAGTCACCACTTCAAAGGGCTTTCGCCTTAGCTCCCATTATATTCCATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACCACTTCAAAGGGCTTTCGCCTTAGCTCCCATTATATTCCATTA  750

seq1  GAAAGAACTAATGTGTTTACCAAGCTTCTTCTTCACCCAGCCCATCTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACTAATGTGTTTACCAAGCTTCTTCTTCACCCAGCCCATCTCAC  800

seq1  GAACGTTCTGATAAGAAAATATTTTAAGAGACTTATAGGTTAGAGGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGTTCTGATAAGAAAATATTTTAAGAGACTTATAGGTTAGAGGAGAA  850

seq1  AATTTTTGCTATAAATGATTACCCCTAAATAACTCTTTTTGAAGGTGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGCTATAAATGATTACCCCTAAATAACTCTTTTTGAAGGTGCTT  900

seq1  TTTTTTTTTTAATGTGTTCAAGTGCATGGTGGTTTGAATATGCTTGGCCC  950
      |||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  TTTTTTTTTTAATGTGTTCAAGTGCATGGTGG-TTGAATATGCTTGGGCC  949

seq1  ATGGGAAGTGGCACTCTTAAGAGGTATGGCCTTGTTAG-AATAGGTATGG  999
      ||||||||| |||||||| ||| ||||||||||||||| |||||||||||
seq2  ATGGGAAGT-GCACTCTT-AGA-GTATGGCCTTGTTAGAAATAGGTATGG  996

seq1  CCTTATTGGAGGAAGTGTGTCACTGTGTCGATGGGCTTTTGAGAGCTTCC  1049
      |  ||||||||  ||||||||||||||||||||||| ||||| ||||  |
seq2  C--TATTGGAG--AGTGTGTCACTGTGTCGATGGGC-TTTGA-AGCT--C  1038

seq1  TCCTGGCTGCCTGTGGAAGACAAAGCCAATCTTCTGGCTGCCTTCAGATC  1099
      | || |||| |||| ||  |||||||| ||| ||| |||| |||| ||||
seq2  T-CTTGCTG-CTGT-GAGAACAAAGCC-ATC-TCT-GCTG-CTTC-GATC  1080

seq1  AAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCG  1149
      ||||||||||  |||||| ||  ||| |||||| |     ||| ||| ||
seq2  AAAATGTAGA--TCTCAG-GC--TCT-CAGCACAA-----TCTCGATTCG  1119

seq1  GCCAGGCTTCTGGCCATAATGAGGACTGAACCTCTGAAACTGT  1192
        || |||||||    |||||| ||||||||||||||| ||||
seq2  --CA-GCTTCTG---CTAATGA-GACTGAACCTCTGAACCTGT  1155