BAC Information

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BAC

Clone NameB6Ng01-179P11
Chromosome12 (Build37)
Map Location 91,122,990 - 91,258,228
singlet/doubletdoublet
Overlap geneNrxn3
Upstream genenone
Downstream geneLOC100039498, LOC100039287, Dio2, LOC100039295, 4930544I03Rik, 4930534B04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179P11.bB6Ng01-179P11.g
ACCGA006536GA006537
length1,0091,066
definitionB6Ng01-179P11.b B6Ng01-179P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,122,990 - 91,123,994)(91,257,177 - 91,258,228)
sequence
ggaattcccctacttgccattcaaagatctccaagttccccatgcttata
aatcataatgtctgcattcttcatcaatctacggtcttagctattttatt
ataaaatgtagaacaggctatgtttttgacagagtgtaaaaaaaatgttt
catccaaaaaagaattctactccaatatttatagtagcaaaggaaaagga
cagatggtctgtagggggattatgtctgtggggtgcttcctatgatggga
ttgacctaggtagtgaagaactctgagatccattgactaggacaatggat
ttcttattgttctccttagtgtctttctttctagaagtcacaagatactt
atgcagactgagtagagaatagagagagggagaggaaaattacaacattt
ctccttggccaagttcacaggaaagtgcacagaagataagattgcctttg
gaacaaagctaacgtttgtttgtttgtttgttttcatcttctccccatgt
atgatatctgctgaatcattaagtacaatgcattttgcttttcaactttg
cacttgctccacttgtatttgtaagaattttatttgtgaaagagtctaat
gtagatagatattgaatatatagatagtagatttttttcctttatttgag
tatgtatgggacacaggtgacactgtgtttatatgaagatcagagaacaa
attttaaggtcagttcctttcctctagcatgtggctgctgaggttggaac
taaggtcttccttaggcactggatggcaagtacctttaccggctgagtca
tctcaccaacaccataaaatatttttacaatttgtcttccaaatggcata
tttaatactgatatttcttcaagggagactaagattgggtgggttttctg
ggttacatagatcaaatggaattttgtccaataattgtttattaggcatt
tattataagacagcttctacagtctataaaaatgggtttcattgaatcag
acaagggcc
gaattcaattacctgaaaatttaatcaaacaagcaatggatctaatggcc
agaacactgaggcgatgataaaacagaagtctgggtttttttttttttaa
atcccttttgaataaaattgaagagtaatgggtatgtctcctgaaagtga
gttatcattttataaagaatagataggattcatttcttattaaaatatcc
ctagatgaccatgaagctgatgtcgtggaagtcatgggatattgcagtgt
gtaagagtaataatggctatcgtaatagcttacatttacagagggaacag
tgggtaccaagtccagccttgaatacttcacatacattacttcattaaca
cctgctggcagccagatgaattagataagatcagttccatataatagagt
ataaagatggagtgtggagacatttttcctcactttgctcaaagtcataa
agttccaaagtgacacacacagaccaaaagcaagctcaaacagggttgac
tttaaatccagggctcttaattaattcctaagacaagtggatgggaaagc
atttacttatttcagtgctgtttgacaaaagataagaatcagaaacgaag
tgattatgagtgagcccaggtaccctaatagtgggagaatgaggaatcag
tcaagggatcacacttgctttgttactactctataaataccatctgcctg
ctggtctgctactttttggaatgaaaactctggggtatcatgtgcagaag
gcatattgtgctctaccaccaaacaaagactcaatcttccaatccaatga
tgcagagcacccctagggcatggtgtggagttttagctgaaccaaggtca
gctaaagtcgttgaagtcgcagaaagttgtgtagttggataccaagaaag
agaaaggtctgcctaattaagaagaatcctccatctcgcattgtatttaa
ggaaggaatggcccatggtctattcataggaaacagtcttgctctcgttc
taaaggtcttgtgagaaggaactatatttttaagccagaacttttttttt
tattcctgtgttgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_91122990_91123994
seq2: B6Ng01-179P11.b_47_1054

seq1  GAATTCCCCTACTTGCCATTCAAAGATCTCCAAGTTCCCCATGCTTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTACTTGCCATTCAAAGATCTCCAAGTTCCCCATGCTTATAA  50

seq1  ATCATAATGTCTGCATTCTTCATCAATCTACGGTCTTAGCTATTTTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAATGTCTGCATTCTTCATCAATCTACGGTCTTAGCTATTTTATTA  100

seq1  TAAAATGTAGAACAGGCTATGTTTTTGACAGAGTGTAAAAAAAATGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTAGAACAGGCTATGTTTTTGACAGAGTGTAAAAAAAATGTTTC  150

seq1  ATCCAAAAAAGAATTCTACTCCAATATTTATAGTAGCAAAGGAAAAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAAAAGAATTCTACTCCAATATTTATAGTAGCAAAGGAAAAGGAC  200

seq1  AGATGGTCTGTAGGGGGATTATGTCTGTGGGGTGCTTCCTATGATGGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTCTGTAGGGGGATTATGTCTGTGGGGTGCTTCCTATGATGGGAT  250

seq1  TGACCTAGGTAGTGAAGAACTCTGAGATCCATTGACTAGGACAATGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAGGTAGTGAAGAACTCTGAGATCCATTGACTAGGACAATGGATT  300

seq1  TCTTATTGTTCTCCTTAGTGTCTTTCTTTCTAGAAGTCACAAGATACTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTGTTCTCCTTAGTGTCTTTCTTTCTAGAAGTCACAAGATACTTA  350

seq1  TGCAGACTGAGTAGAGAATAGAGAGAGGGAGAGGAAAATTACAACATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACTGAGTAGAGAATAGAGAGAGGGAGAGGAAAATTACAACATTTC  400

seq1  TCCTTGGCCAAGTTCACAGGAAAGTGCACAGAAGATAAGATTGCCTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGCCAAGTTCACAGGAAAGTGCACAGAAGATAAGATTGCCTTTGG  450

seq1  AACAAAGCTAACGTTTGTTTGTTTGTTTGTTTTCATCTTCTCCCCATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCTAACGTTTGTTTGTTTGTTTGTTTTCATCTTCTCCCCATGTA  500

seq1  TGATATCTGCTGAATCATTAAGTACAATGCATTTTGCTTTTCAACTTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCTGCTGAATCATTAAGTACAATGCATTTTGCTTTTCAACTTTGC  550

seq1  ACTTGCTCCACTTGTATTTGTAAGAATTTTATTTGTGAAAGAGTCTAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTCCACTTGTATTTGTAAGAATTTTATTTGTGAAAGAGTCTAATG  600

seq1  TAGATAGATATTGAATATATAGATAGTAGATTTTTTTCCTTTATTTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATATTGAATATATAGATAGTAGATTTTTTTCCTTTATTTGAGT  650

seq1  ATGTATGGGACACAGGTGACACTGTGTTTATATGAAGATCAGAGAACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGGGACACAGGTGACACTGTGTTTATATGAAGATCAGAGAACAAA  700

seq1  TTTTAAGGTCAGTTCCTTTCCTCTAGCATGTGGCTGCTGAGGTTGGAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGTCAGTTCCTTTCCTCTAGCATGTGGCTGCTGAGGTTGGAACT  750

seq1  AAGGTCTTCCTTAGGCACTGGATGGCAAGTACCTTTACCGGCTGAGTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTTCCTTAGGCACTGGATGGCAAGTACCTTTACCGGCTGAGTCAT  800

seq1  CTCACCAACACCATAAAATA-TTTTACAATTTGTCTTCCAAATGGCATAT  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTCACCAACACCATAAAATATTTTTACAATTTGTCTTCCAAATGGCATAT  850

seq1  TTAATACTGATATTTCTTCAAGGGAGACTAAGATTGGGT-GGTTTTCT-G  897
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  TTAATACTGATATTTCTTCAAGGGAGACTAAGATTGGGTGGGTTTTCTGG  900

seq1  GTTACATAGATCAAATGGAATTTTGTCCAATAAATGTTTATTAAGCATTT  947
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  GTTACATAGATCAAATGGAATTTTGTCCAATAATTGTTTATTAGGCATTT  950

seq1  ATTATAAGACAGCTTCTACAGTCTAATAAAAAT-GGTTCAATTGAATCAG  996
      |||||||||||||||||||||||| |||||||| ||||  ||||||||||
seq2  ATTATAAGACAGCTTCTACAGTCT-ATAAAAATGGGTTTCATTGAATCAG  999

seq1  ACAAGGGCC  1005
      |||||||||
seq2  ACAAGGGCC  1008

seq1: chr12_91257177_91258228
seq2: B6Ng01-179P11.g_67_1132 (reverse)

seq1  AAACAAACACAGAAATTAAAAAAAAAG-TCTGGGCTAAAAATATAGTTCC  49
      |||| ||||||| ||| |||||||||| |||||  |||||||||||||||
seq2  AAAC-AACACAGGAATAAAAAAAAAAGTTCTGGCTTAAAAATATAGTTCC  49

seq1  -TCTCACAAAGACC-TTAGAAGGAGAGGCAGACTGTTT-CTATGAATAGA  96
       |||||| |||||| |||||| |||||  ||||||||| |||||||||||
seq2  TTCTCAC-AAGACCTTTAGAACGAGAGCAAGACTGTTTCCTATGAATAGA  98

seq1  -CAT-GGCCATT-CTTCCTTTAATACAATGCGAGAT-GAGGA-TCTTC-T  140
       ||| ||||||| ||||||| ||||||||||||||| ||||| ||||| |
seq2  CCATGGGCCATTCCTTCCTTAAATACAATGCGAGATGGAGGATTCTTCTT  148

seq1  AATTAGGCAGACC-TTCTCCTTC-TGGTATCCAACTACACAAC-TTCTGC  187
      ||||||||||||| ||||| ||| ||||||||||||||||||| ||||||
seq2  AATTAGGCAGACCTTTCTCTTTCTTGGTATCCAACTACACAACTTTCTGC  198

seq1  GACTTCAACGACTTTAGCTGACCTTGGTTCAGCTAAAACTCCACACCATG  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAACGACTTTAGCTGACCTTGGTTCAGCTAAAACTCCACACCATG  248

seq1  CCCTAGGGGTGCTCTGCATCATTGGATTGGAAGATTGAGTCTTTGTTTGG  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGGGGTGCTCTGCATCATTGGATTGGAAGATTGAGTCTTTGTTTGG  298

seq1  TGGTAGAGCACAATATGCCTTCTGCACATGATA-CCCAGAG-TTTCATTC  335
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  TGGTAGAGCACAATATGCCTTCTGCACATGATACCCCAGAGTTTTCATTC  348

seq1  CAAAAAGTAGCAGACCAGCAGGCAGATGGTA-TTATAGAGTAGTAACAAA  384
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAAAAAGTAGCAGACCAGCAGGCAGATGGTATTTATAGAGTAGTAACAAA  398

seq1  GCAAGTGTGATCCCTTGACTGATTCCTCATTCTCCCACTATTAGGGTACC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGTGATCCCTTGACTGATTCCTCATTCTCCCACTATTAGGGTACC  448

seq1  TGGGCTCACTCATAATCACTTCGTTTCTGATTCTTATCTTTTGTCAAACA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCACTCATAATCACTTCGTTTCTGATTCTTATCTTTTGTCAAACA  498

seq1  GCACTGAAATAAGTAAATGCTTTCCCATCCACTTGTCTTAGGAATTAATT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGAAATAAGTAAATGCTTTCCCATCCACTTGTCTTAGGAATTAATT  548

seq1  AAGAGCCCTGGATTTAAAGTCAACCCTGTTTGAGCTTGCTTTTGGTCTGT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCCTGGATTTAAAGTCAACCCTGTTTGAGCTTGCTTTTGGTCTGT  598

seq1  GTGTGTCACTTTGGAACTTTATGACTTTGAGCAAAGTGAGGAAAAATGTC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCACTTTGGAACTTTATGACTTTGAGCAAAGTGAGGAAAAATGTC  648

seq1  TCCACACTCCATCTTTATACTCTATTATATGGAACTGATCTTATCTAATT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACTCCATCTTTATACTCTATTATATGGAACTGATCTTATCTAATT  698

seq1  CATCTGGCTGCCAGCAGGTGTTAATGAAGTAATGTATGTGAAGTATTCAA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGCTGCCAGCAGGTGTTAATGAAGTAATGTATGTGAAGTATTCAA  748

seq1  GGCTGGACTTGGTACCCACTGTTCCCTCTGTAAATGTAAGCTATTACGAT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGACTTGGTACCCACTGTTCCCTCTGTAAATGTAAGCTATTACGAT  798

seq1  AGCCATTATTACTCTTACACACTGCAATATCCCATGACTTCCACGACATC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTATTACTCTTACACACTGCAATATCCCATGACTTCCACGACATC  848

seq1  AGCTTCATGGTCATCTAGGGATATTTTAATAAGAAATGAATCCTATCTAT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCATGGTCATCTAGGGATATTTTAATAAGAAATGAATCCTATCTAT  898

seq1  TCTTTATAAAATGATAACTCACTTTCAGGAGACATACCCATTACTCTTCA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATAAAATGATAACTCACTTTCAGGAGACATACCCATTACTCTTCA  948

seq1  ATTTTATTCAAAAGGGATTTAAAAAAAAAAAAACCCAGACTTCTGTTTTA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTCAAAAGGGATTTAAAAAAAAAAAAACCCAGACTTCTGTTTTA  998

seq1  TCATCGCCTCAGTGTTCTGGCCATTAGATCCATTGCTTGTTTGATTAAAT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGCCTCAGTGTTCTGGCCATTAGATCCATTGCTTGTTTGATTAAAT  1048

seq1  TTTCAGGTAATTGAATTC  1052
      ||||||||||||||||||
seq2  TTTCAGGTAATTGAATTC  1066