BAC Information

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BAC

Clone NameB6Ng01-180K01
Chromosome12 (Build37)
Map Location 100,017,136 - 100,194,240
singlet/doubletdoublet
Overlap geneZc3h14, Eml5, LOC100039845, Ttc8
Upstream geneLOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21
Downstream geneEG667779, Ches1, LOC100039892, 2610021K21Rik, Tdp1, LOC100040041
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180K01.bB6Ng01-180K01.g
ACCGA007008GA007009
length1,112950
definitionB6Ng01-180K01.b B6Ng01-180K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,017,136 - 100,018,227)(100,193,297 - 100,194,240)
sequence
gaattctctgaagagatgtttggaatagaattacaatcctatcccttagt
agaattagttatgattttccttaaaagtaattataattatataaaagatt
tgacattcttctcacttgtatgattttgagaataaaaggtatattcagaa
gtaaacatttatggccaatttttttggctcagattactatgacatggaat
ccatggtccatgcagacacaagatcatttattctgaagaagccaaagctg
tctgaggaaatagtagtgacacccaaccaggattcggggatgaagactgc
agatgcccttcgggtcctttcaggacaccttatgcagacacggtagatgg
tttctttttcttgtgtagctactgtgtgtgactgtagtgcaggtcagctg
ttagttcccagcttccctgttcctgtagctcccactagatggtgctctca
gtgactcactggctaggccaacagtagccaaattcagctctcaaaaattc
gagttcatctttcttgttcagaaatccattaaatagaaataaaagctgag
tataattgaactctgttgataaggggtgtagtattttgttttaaatgtat
acccaaggaattggactttaaaagctgggtaacccaaatcaggaaatcct
tctgcaaggtgttaaggactaaggcttgcgtggttccttcctaagaaagc
agacagagtgttcagcaaagaaatgtacagatgataaaaatcacataaaa
ataaagccgctgccagatgctctgagcatccattctaaggtgtttggttt
ggtttggttttggtttatttccatgttgatcctataaggatcccatggac
aaatggagagtcacagttgagaggatatttgtcactattagttaagttca
ggctagaaaggtcactgttgatgctgctgcaagtgctgtccatggccgtt
gtgtattaaggattccaccttaggctgtattcaggaagtcattcctaagc
tatcgaagtgagcaagccgctaagccaaaggtacctcttttggtaactaa
cagtgtcctgcggaagatggaatttaaggtaggctcaccatttttgtgtt
cctttttcccta
gaattctgatttttgattcttgtcttcttactgttggaactcttttattc
tggagtcagtgtcaatgtaacaacgacagccaacagttccattaatggga
cacttggatgttgtggtcctattatctcaagaatgcgcccctattattgt
tctccttaacattggctctcttctaaaatgaatgccagaaaagtcccctc
aacctcctcttgcaaaaattaattacttttcctgtgttctccatctctcc
tgctccaggggagacctctaaatatgcaaactacttatccaggaacggtg
ccaccatgctgagcctctaatggacccaaaaaaaaaaagtcaacatctct
acttgaatgctatggaaatgaaaaataagccatggacaattatactttca
tgtgcctatttctctttcccccctctagccagaataaaagacaaaaaaaa
aaaaaatacgagagaagtatgacttctggcagcattatctctgcaatgtg
gaaactgttttcagagggctccattcaagattgcattgtaaacatctatg
catgttaactttgactcaatctttattaagacctatcccagcaaacagat
cacattcaccaccatgtttaatataaacagacctgctacgtttttagaaa
aagcttctatttggctgtttctttatgtaccctgacttcctaatgttgga
ttcagtgcttatgataggtaaatagttgagtttgccttcagatacaatcc
tgaatcaagtctaatatggatggaaccagatgttgctgcctaatctcatt
aaggaacattatacattatgagacatataaaaatggtaggaagaaagtca
tatcttagcatttcttcgtttacatggaggcttgggctggaaagagacag
gaacatttttattgactcctgatgcccctgtgatccctagggagaccttt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_100017136_100018227
seq2: B6Ng01-180K01.b_41_1152

seq1  GAATTCTCTGAAGAGATGTTTGGAATAGAATTACAATCCTATCCCTTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAAGAGATGTTTGGAATAGAATTACAATCCTATCCCTTAGT  50

seq1  AGAATTAGTTATGATTTTCCTTAAAAGTAATTATAATTATATAAAAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAGTTATGATTTTCCTTAAAAGTAATTATAATTATATAAAAGATT  100

seq1  TGACATTCTTCTCACTTGTATGATTTTGAGAATAAAAGGTATATTCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTCTTCTCACTTGTATGATTTTGAGAATAAAAGGTATATTCAGAA  150

seq1  GTAAACATTTATGGCCAATTTTTTTGGCTCAGATTACTATGACATGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACATTTATGGCCAATTTTTTTGGCTCAGATTACTATGACATGGAAT  200

seq1  CCATGGTCCATGCAGACACAAGATCATTTATTCTGAAGAAGCCAAAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTCCATGCAGACACAAGATCATTTATTCTGAAGAAGCCAAAGCTG  250

seq1  TCTGAGGAAATAGTAGTGACACCCAACCAGGATTCGGGGATGAAGACTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGAAATAGTAGTGACACCCAACCAGGATTCGGGGATGAAGACTGC  300

seq1  AGATGCCCTTCGGGTCCTTTCAGGACACCTTATGCAGACACGGTAGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCCTTCGGGTCCTTTCAGGACACCTTATGCAGACACGGTAGATGG  350

seq1  TTTCTTTTTCTTGTGTAGCTACTGTGTGTGACTGTAGTGCAGGTCAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTCTTGTGTAGCTACTGTGTGTGACTGTAGTGCAGGTCAGCTG  400

seq1  TTAGTTCCCAGCTTCCCTGTTCCTGTAGCTCCCACTAGATGGTGCTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCCCAGCTTCCCTGTTCCTGTAGCTCCCACTAGATGGTGCTCTCA  450

seq1  GTGACTCACTGGCTAGGCCAACAGTAGCCAAATTCAGCTCTCAAAAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCACTGGCTAGGCCAACAGTAGCCAAATTCAGCTCTCAAAAATTC  500

seq1  GAGTTCATCTTTCTTGTTCAGAAATCCATTAAATAGAAATAAAAGCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCATCTTTCTTGTTCAGAAATCCATTAAATAGAAATAAAAGCTGAG  550

seq1  TATAATTGAACTCTGTTGATAAGGGGTGTAGTATTTTGTTTTAAATGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTGAACTCTGTTGATAAGGGGTGTAGTATTTTGTTTTAAATGTAT  600

seq1  ACCCAAGGAATTGGACTTTAAAAGCTGGGTAACCCAAATCAGGAAATCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGGAATTGGACTTTAAAAGCTGGGTAACCCAAATCAGGAAATCCT  650

seq1  TCTGCAAGGTGTTAAGGACTAAGGCTTGCGTGGTTCCTTCCTAAGAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAGGTGTTAAGGACTAAGGCTTGCGTGGTTCCTTCCTAAGAAAGC  700

seq1  AGACAGAGTGTTCAGCAAAGAAATGTACAGATGATAAAAATCACATAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGTGTTCAGCAAAGAAATGTACAGATGATAAAAATCACATAAAA  750

seq1  ATAAAGCCGCTGCCAGATGCTCTGAGCATCCATTCTAAGGTGTTTGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCCGCTGCCAGATGCTCTGAGCATCCATTCTAAGGTGTTTGGTTT  800

seq1  GGTTTGGTTTTGGTTTATTTCCATGTTGATCCTATAAGGATCCCATGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGTTTTGGTTTATTTCCATGTTGATCCTATAAGGATCCCATGGAC  850

seq1  -AATGGAGAGTCACAGTTGAGAGGATA-TTGTCACTATTAG-TAAGTCCA  897
       |||||||||||||||||||||||||| ||||||||||||| ||||| ||
seq2  AAATGGAGAGTCACAGTTGAGAGGATATTTGTCACTATTAGTTAAGTTCA  900

seq1  GGCTAG-AAGGTCACTG-TGATGCTGCTGCAAGTGCTGTCCATGGCCGTT  945
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  GGCTAGAAAGGTCACTGTTGATGCTGCTGCAAGTGCTGTCCATGGCCGTT  950

seq1  GTGTATT-AGGATTCCA-CTTAGGCTGTA-TCAGGAAGTCATT-CTAAGC  991
      ||||||| ||||||||| ||||||||||| ||||||||||||| ||||| 
seq2  GTGTATTAAGGATTCCACCTTAGGCTGTATTCAGGAAGTCATTCCTAAG-  999

seq1  CTATCGTAGTGAAGCAAG-CGCAAAG-CAAAGGTACTCCTTT--GTTACT  1037
      |||||| |||| |||||| ||| ||| |||||||||  ||||  || |||
seq2  CTATCGAAGTG-AGCAAGCCGCTAAGCCAAAGGTACCTCTTTTGGTAACT  1048

seq1  -ACA--GTTCTGCGGAAGA-GGACTTTA--GGAGGCTCAGCA-TTTTGTG  1080
       |||  || |||||||||| ||| ||||  | ||||||| || |||||||
seq2  AACAGTGTCCTGCGGAAGATGGAATTTAAGGTAGGCTCACCATTTTTGTG  1098

seq1  TTC--GTTTCCCTA  1092
      |||   ||||||||
seq2  TTCCTTTTTCCCTA  1112

seq1: chr12_100193297_100194240
seq2: B6Ng01-180K01.g_64_1013 (reverse)

seq1  AAAGGTCTCCCCTAGGGGATCACAGGGGCCTTCAGGAGTCATTAAAAGTG  50
      |||||||| ||||| ||||||||||||| | |||||||||| ||||| ||
seq2  AAAGGTCT-CCCTA-GGGATCACAGGGG-CATCAGGAGTCAATAAAAATG  47

seq1  TTCCTGTCTACTTTCAGCCCAAGCCT-CATGT-AACG-AGAATTGCTAAG  97
      |||||||||  || |||||||||||| ||||| |||| |||| |||||||
seq2  TTCCTGTCTCTTTCCAGCCCAAGCCTCCATGTAAACGAAGAAATGCTAAG  97

seq1  ATATGACTTTC-TCCTACCATTTTTAT-TGTCTCATAATGTAT-ATGTTC  144
      ||||||||||| ||||||||||||||| ||||||||||||||| ||||||
seq2  ATATGACTTTCTTCCTACCATTTTTATATGTCTCATAATGTATAATGTTC  147

seq1  CTTAATGAGATTA-ACAGCAACATCTGGTTCC-TCCATATTAGACTTGAT  192
      |||||||||||||  ||||||||||||||||| |||||||||||||||||
seq2  CTTAATGAGATTAGGCAGCAACATCTGGTTCCATCCATATTAGACTTGAT  197

seq1  TCAGGATTGTATCTGAAGGCAAACTCAACTATTTACCTATCATAAGCACT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATTGTATCTGAAGGCAAACTCAACTATTTACCTATCATAAGCACT  247

seq1  GAATCCAACATTAGGAAGTCAGGGTACAT-AAGAAACAGCCAAATAGAAG  291
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATCCAACATTAGGAAGTCAGGGTACATAAAGAAACAGCCAAATAGAAG  297

seq1  CTTTTTCTAAAAACGTAGCAGGTCTGTTTATATTAAACATGGTGGTGAAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTAAAAACGTAGCAGGTCTGTTTATATTAAACATGGTGGTGAAT  347

seq1  GTGATCTGTTTGCTGGGATAGGTCTTAATAAAGATTGAGTCAAAGTTAAC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTGTTTGCTGGGATAGGTCTTAATAAAGATTGAGTCAAAGTTAAC  397

seq1  ATGCATAGATGTTTACAATGCAATCTTGAATGGAGCCCTCTGAAAACAGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAGATGTTTACAATGCAATCTTGAATGGAGCCCTCTGAAAACAGT  447

seq1  TTCCACATTGCAGAGATAATGCTGCCAGAAGTCATACTTCTCTCGTATTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATTGCAGAGATAATGCTGCCAGAAGTCATACTTCTCTCGTATTT  497

seq1  TTTTTTTTTTTGTCTTTTATTCTGGCTAGAGGGGGGAAAGAGAAATAGGC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTGTCTTTTATTCTGGCTAGAGGGGGGAAAGAGAAATAGGC  547

seq1  ACATGAAAGTATAATTGTCCATGGCTTATTTTTCATTTCCATAGCATTCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAAGTATAATTGTCCATGGCTTATTTTTCATTTCCATAGCATTCA  597

seq1  AGTAGAGATGTTGACTTTTTTTTTTTGGGTCCATTAGAGGCTCAGCATGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGATGTTGACTTTTTTTTTTTGGGTCCATTAGAGGCTCAGCATGG  647

seq1  TGGCACCGTTCCTGGATAAGTAGTTTGCATATTTAGAGGTCTCCCCTGGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCGTTCCTGGATAAGTAGTTTGCATATTTAGAGGTCTCCCCTGGA  697

seq1  GCAGGAGAGATGGAGAACACAGGAAAAGTAATTAATTTTTGCAAGAGGAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGAGATGGAGAACACAGGAAAAGTAATTAATTTTTGCAAGAGGAG  747

seq1  GTTGAGGGGACTTTTCTGGCATTCATTTTAGAAGAGAGCCAATGTTAAGG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGGGACTTTTCTGGCATTCATTTTAGAAGAGAGCCAATGTTAAGG  797

seq1  AGAACAATAATAGGGGCGCATTCTTGAGATAATAGGACCACAACATCCAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAATAATAGGGGCGCATTCTTGAGATAATAGGACCACAACATCCAA  847

seq1  GTGTCCCATTAATGGAACTGTTGGCTGTCGTTGTTACATTGACACTGACT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCATTAATGGAACTGTTGGCTGTCGTTGTTACATTGACACTGACT  897

seq1  CCAGAATAAAAGAGTTCCAACAGTAAGAAGACAAGAATCAAAAATCAGAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATAAAAGAGTTCCAACAGTAAGAAGACAAGAATCAAAAATCAGAA  947

seq1  TTC  944
      |||
seq2  TTC  950