BAC Information

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BAC

Clone NameB6Ng01-180K16
Chromosome12 (Build37)
Map Location 89,956,845 - 90,126,856
singlet/doubletdoublet
Overlap geneLOC100039261, EG666915
Upstream geneLOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1
Downstream geneNrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180K16.bB6Ng01-180K16.g
ACCGA007036GA007037
length1,1331,059
definitionB6Ng01-180K16.b B6Ng01-180K16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,125,738 - 90,126,856)(89,956,845 - 89,957,878)
sequence
gaattccaggaaaatgatactgtcttgataaacaaggtctaaggctccca
aaaaatgacaccagagatgggtctctggactccttatgcaggtgcacaca
tgcatatatacatgcacaaagaactacttaaataactatcttcaaaaaaa
gacttatttttttagcttttaaccatatagtaggcttattccaaagaaat
aagttatacatagcacaatttaaaacaagttcagattgtacttgtcttac
aattttacagtcttcctacttcacaatagattatcttgcatcctcttagg
ggaataggcctacaatattacagacacctgaagcccaccaggaagaaatc
caccagtagagagactgagaaagaaaaggatgccaatgttatgacccaag
tctactcttggaaaatggaagttctataaagacaggaaaactccagtcag
aagtgactttgaaacatcctgactctaaggaccatttctacactaataac
tctcaaatttttaatctccaactcagtcaatctttgcccatgaaatagta
atccagcagttttggagggaaagatgtgtgggagataatatagtaaatgg
aacctagcaggccctgaggaatttgtgctatgacctgcaagtacaaattc
aatagaaacttactgggaacagatattctgggtaccatatacctttgtgg
gtttagtaccccaggaagccgcatgagagtgctcattatgagtaaaatct
tcctcatctttcttcttagatgtcaaaccaaacctgggcatctgagattc
aacaaaactcaaccatactcctgatctttgttcctatgttatcttttacc
tcagtcttaagggaaaaaaaaaaaaaaacaacaaaaaactaccttttccg
ttgctagggggaaagggccttggatccttcactatctcttcttgccatgt
ccaacagccatccttttatccaccagcaaatttcttgttggcacttcctt
caaaatgccacctctgagcaatatccacctttttcttcatacactgatga
caaccttttcctcacgcactaaccttcttatatcccactggatttctaac
agagcttcttatttgttcgtttgcttctttcct
gaattcaggagatgactggaaggctcgtattggctgcaagccctggagac
tcttttgttccatgggataagcaggatgcttggagttagaaacagttact
gggaactgacctcttcaaagcctgactattcccagtccccccctgggctg
gtgcctgcacagagacaaatcttgcattcacctgctgcccttccttcctc
tgccagacatggttgtccagattaggtcctgcctttttagaattttggaa
gctctgctatagtctccatgtgactccctgctgtctctgtgtcctgtgat
tggactctttcagtgcatgtttcctccttgaaaaatgctaggttgcttta
tggcacaatctgtcatgcacaatgaatgtctaataaagctaattaataag
aagtcacttattaataacaagggagtcatcataacatagaggacagaaag
ccaaactgactcccgcaggccagcaatgtagtactacccttgggagacaa
gtgcaagaacacaaggaatgtttgcaggggaccttgggcaaaatgctttg
ggctaatagcattggggtatatgtttgaaatctgctcagaagtagggcat
gtgaggtgttagtgattttaaaaacaatacaacagagaaggttgggggac
tgaagagcttggctctactgaagtcatgccttggggattagtattgctat
ctaatgtctattctagtggcttgattttggtgtaagaactctgagaattg
tatgatttatttgggagagagtgatgggaacacagaatgttagcacccat
ttagccaagagacacgggttcagttgggtaggggtgctttgtctaatatg
catgaatccctgggattttgactactagctatggatagatgggaacattg
gtgttgtgggattcttgtaatccctggaaagcatgaggtagagggaggaa
gccaggagaatcagaaggttcaaggttaatctttaggcaatttgaggcta
gctggcttattatcacccagattatgttcttcaaaccataccaacaacag
atcaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_90125738_90126856
seq2: B6Ng01-180K16.b_44_1176 (reverse)

seq1  AGGAAAGAAGCAAAAGGACCAAATAAGAGCTTCTTGTTAG-AATCCAGGT  49
      ||||||||||| ||| || |||||||||   || |||||| |||||| ||
seq2  AGGAAAGAAGC-AAACGAACAAATAAGAAGCTC-TGTTAGAAATCCA-GT  47

seq1  GGGATAT-AGAAGTTTAGTGCGTGGGGGAGGGGGGTGGTCATCAGTGTAT  98
      ||||||| ||||| |||||||||| || |    ||| |||||||||||||
seq2  GGGATATAAGAAGGTTAGTGCGTGAGGAA--AAGGTTGTCATCAGTGTAT  95

seq1  G-AGAAAA--GTGGATA-TGCTCAGAG--TGCATTTTGAAGGAAGTGCCA  142
      | ||||||  ||||||| |||||||||   ||||||||||||||||||||
seq2  GAAGAAAAAGGTGGATATTGCTCAGAGGTGGCATTTTGAAGGAAGTGCCA  145

seq1  ACA--GAATTTGCTGGT-GATAAA--GATGGCTG-TGGACATGGCAAGAA  186
      |||   ||||||||||| ||||||  |||||||| |||||||||||||||
seq2  ACAAGAAATTTGCTGGTGGATAAAAGGATGGCTGTTGGACATGGCAAGAA  195

seq1  GAGATAGTG-AGGATCCAAGG-CCTTTCCCCCTAGCAACGG-AAAGGTAG  233
      ||||||||| ||||||||||| ||||||||||||||||||| ||||||||
seq2  GAGATAGTGAAGGATCCAAGGCCCTTTCCCCCTAGCAACGGAAAAGGTAG  245

seq1  TTTTTTGTTG-TTTTTTTTTTTTTTCCCTTAAGACTGAGGTAAAAGATAA  282
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTGTTTTTTTTTTTTTTTCCCTTAAGACTGAGGTAAAAGATAA  295

seq1  CATAGGAACAAAGATCAGGAGTATGGTTGAGTTTTGTTGAATCTCAGATG  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGAACAAAGATCAGGAGTATGGTTGAGTTTTGTTGAATCTCAGATG  345

seq1  CCCAGGTTTGGTTTGACATCTAAGAAGAAAGATGAGGAAGATTTTACTCA  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTTTGGTTTGACATCTAAGAAGAAAGATGAGGAAGATTTTACTCA  395

seq1  TAATGAGCACTCTCATGC-TCTTCCTGGGGTACTAAACCCACAAAGGTAT  431
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  TAATGAGCACTCTCATGCGGCTTCCTGGGGTACTAAACCCACAAAGGTAT  445

seq1  ATGGTACCCAGAATATCTGTTCCCAGTAAGTTTCTATTGAATTTGTACTT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTACCCAGAATATCTGTTCCCAGTAAGTTTCTATTGAATTTGTACTT  495

seq1  GCAGGTCATAGCACAAATTCCTCAGGGCCTGCTAGGTTCCATTTACTATA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCATAGCACAAATTCCTCAGGGCCTGCTAGGTTCCATTTACTATA  545

seq1  TTATCTCCCACACATCTTTCCCTCCAAAACTGCTGGATTACTATTTCATG  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCCCACACATCTTTCCCTCCAAAACTGCTGGATTACTATTTCATG  595

seq1  GGCAAAGATTGACTGAGTTGGAGATTAAAAATTTGAGAGTTATTAGTGTA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGATTGACTGAGTTGGAGATTAAAAATTTGAGAGTTATTAGTGTA  645

seq1  GAAATGGTCCTTAGAGTCAGGATGTTTCAAAGTCACTTCTGACTGGAGTT  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGTCCTTAGAGTCAGGATGTTTCAAAGTCACTTCTGACTGGAGTT  695

seq1  TTCCTGTCTTTATAGAACTTCCATTTTCCAAGAGTAGACTTGGGTCATAA  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCTTTATAGAACTTCCATTTTCCAAGAGTAGACTTGGGTCATAA  745

seq1  CATTGGCATCCTTTTCTTTCTCAGTCTCTCTACTGGTGGATTTCTTCCTG  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCATCCTTTTCTTTCTCAGTCTCTCTACTGGTGGATTTCTTCCTG  795

seq1  GTGGGCTTCAGGTGTCTGTAATATTGTAGGCCTATTCCCCTAAGAGGATG  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTTCAGGTGTCTGTAATATTGTAGGCCTATTCCCCTAAGAGGATG  845

seq1  CAAGATAATCTATTGTGAAGTAGGAAGACTGTAAAATTGTAAGACAAGTA  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAATCTATTGTGAAGTAGGAAGACTGTAAAATTGTAAGACAAGTA  895

seq1  CAATCTGAACTTGTTTTAAATTGTGCTATGTATAACTTATTTCTTTGGAA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGAACTTGTTTTAAATTGTGCTATGTATAACTTATTTCTTTGGAA  945

seq1  TAAGCCTACTATATGGTTAAAAGCTAAAAAAATAAGTCTTTTTTTGAAGA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTACTATATGGTTAAAAGCTAAAAAAATAAGTCTTTTTTTGAAGA  995

seq1  TAGTTATTTAAGTAGTTCTTTGTGCATGTATATATGCATGTGTGCACCTG  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATTTAAGTAGTTCTTTGTGCATGTATATATGCATGTGTGCACCTG  1045

seq1  CATAAGGAGTCCAGAGACCCATCTCTGGTGTCATTTTTTGGGAGCCTTAG  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGAGTCCAGAGACCCATCTCTGGTGTCATTTTTTGGGAGCCTTAG  1095

seq1  ACCTTGTTTATCAAGACAGTATCATTTTCCTGGAATTC  1119
      ||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTTTATCAAGACAGTATCATTTTCCTGGAATTC  1133

seq1: chr12_89956845_89957878
seq2: B6Ng01-180K16.g_69_1127

seq1  GAATTCAGGAGATGACTGGAAGGCTCGTATTGGCTGCAAGCCCTGGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGATGACTGGAAGGCTCGTATTGGCTGCAAGCCCTGGAGAC  50

seq1  TCTTTTGTTCCATGGGATAAGCAGGATGCTTGGAGTTAGAAACAGTTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTTCCATGGGATAAGCAGGATGCTTGGAGTTAGAAACAGTTACT  100

seq1  GGGAACTGACCTCTTCAAAGCCTGACTATTCCCAGTCCCCCCCTGGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTGACCTCTTCAAAGCCTGACTATTCCCAGTCCCCCCCTGGGCTG  150

seq1  GTGCCTGCACAGAGACAAATCTTGCATTCACCTGCTGCCCTTCCTTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGCACAGAGACAAATCTTGCATTCACCTGCTGCCCTTCCTTCCTC  200

seq1  TGCCAGACATGGTTGTCCAGATTAGGTCCTGCCTTTTTAGAATTTTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGACATGGTTGTCCAGATTAGGTCCTGCCTTTTTAGAATTTTGGAA  250

seq1  GCTCTGCTATAGTCTCCATGTGACTCCCTGCTGTCTCTGTGTCCTGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCTATAGTCTCCATGTGACTCCCTGCTGTCTCTGTGTCCTGTGAT  300

seq1  TGGACTCTTTCAGTGCATGTTTCCTCCTTGAAAAATGCTAGGTTGCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCTTTCAGTGCATGTTTCCTCCTTGAAAAATGCTAGGTTGCTTTA  350

seq1  TGGCACAATCTGTCATGCACAATGAATGTCTAATAAAGCTAATTAATAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAATCTGTCATGCACAATGAATGTCTAATAAAGCTAATTAATAAG  400

seq1  AAGTCACTTATTAATAACAAGGGAGTCATCATAACATAGAGGACAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACTTATTAATAACAAGGGAGTCATCATAACATAGAGGACAGAAAG  450

seq1  CCAAACTGACTCCCGCAGGCCAGCAATGTAGTACTACCCTTGGGAGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTGACTCCCGCAGGCCAGCAATGTAGTACTACCCTTGGGAGACAA  500

seq1  GTGCAAGAACACAAGAAATGTTTGCAGGGGACCTTGGGCAAAATGCTTTG  550
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTGCAAGAACACAAGGAATGTTTGCAGGGGACCTTGGGCAAAATGCTTTG  550

seq1  GGCTAATAGCATTGGGGTATATGTTTGAAATCTGCTCAGAAGTAGGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATAGCATTGGGGTATATGTTTGAAATCTGCTCAGAAGTAGGGCAT  600

seq1  GTGAGGTGTTAGTGATTTTAAAAACAATACAACAGAGAAGGTTGGGGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTGTTAGTGATTTTAAAAACAATACAACAGAGAAGGTTGGGGGAC  650

seq1  TGAAGAGCTTGGCTCTACTGAAGTCATGCCTTGGGGATTAGTATTGCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGCTTGGCTCTACTGAAGTCATGCCTTGGGGATTAGTATTGCTAT  700

seq1  CTAATGTCTATTCTAGTGGCTTGATTTTGGTGTAAGAACTCTGAGAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTCTATTCTAGTGGCTTGATTTTGGTGTAAGAACTCTGAGAATTG  750

seq1  TATGA-TTATTT-GGAGAGAGTGATGGGAACACAGAATG-TAGCACCCAT  797
      ||||| |||||| |||||||||||||||||||||||||| ||||||||||
seq2  TATGATTTATTTGGGAGAGAGTGATGGGAACACAGAATGTTAGCACCCAT  800

seq1  TTAGCCAAGAGACAC-GGTTCAGTT-GGTA-GGGTGC-TTGTCTAATATG  843
      ||||||||||||||| ||||||||| |||| |||||| ||||||||||||
seq2  TTAGCCAAGAGACACGGGTTCAGTTGGGTAGGGGTGCTTTGTCTAATATG  850

seq1  CATGAATCCCTGG--ATTTGACTACTAGCTATGGATAGAT-GGAACA-TG  889
      |||||||||||||   |||||||||||||||||||||||| |||||| ||
seq2  CATGAATCCCTGGGATTTTGACTACTAGCTATGGATAGATGGGAACATTG  900

seq1  GTGTTGT-GGAT--CTGTAAT-CCTGG-AAGCAGGAGGTAGA-GGAGGAA  933
      ||||||| ||||   |||||| ||||| ||||| |||||||| |||||||
seq2  GTGTTGTGGGATTCTTGTAATCCCTGGAAAGCATGAGGTAGAGGGAGGAA  950

seq1  G-CAGGAGAATCAGAA-GTTCCAGGTT-ATC-TTAGCAAATTTGAGGCTA  979
      | |||||||||||||| |||| ||||| ||| ||||  ||||||||||||
seq2  GCCAGGAGAATCAGAAGGTTCAAGGTTAATCTTTAGGCAATTTGAGGCTA  1000

seq1  GCTGGCTTA-TATCA-CCAGATAATGT--CTCAAA-CAAACAAACAACAA  1024
      ||||||||| ||||| |||||| ||||   ||||| || || |||||| |
seq2  GCTGGCTTATTATCACCCAGATTATGTTCTTCAAACCATACCAACAAC-A  1049

seq1  GAACAACAAA  1034
      || |||||||
seq2  GATCAACAAA  1059