BAC Information

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BAC

Clone NameB6Ng01-180L09
Chromosome12 (Build37)
Map Location 73,627,835 - 73,800,037
singlet/doubletdoublet
Overlap gene1810048J11Rik, LOC209183, LOC100041323, Dhrs7
Upstream geneDaam1, LOC666213, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik, Rtn1, Lrrc9
Downstream geneLOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik, Prkch
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180L09.bB6Ng01-180L09.g
ACCGA007068GA007069
length1,1441,138
definitionB6Ng01-180L09.b B6Ng01-180L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,798,890 - 73,800,037)(73,627,835 - 73,628,973)
sequence
gaattctgaagatcgaagaaagcataatcaaaataaacaccatccacata
tgaacacagaaaaaaggtttcaaagtggatacagtgaaagaaaagcaagg
cggagagacagaagtgaacagagcaaagacaaagacccattttctatcca
ctcctctaaggcgctgcatgattgtaaaaatggggcaaaggtttcatatt
ctacactgatcttatgattttttttgtctcacaaatacttctttatagta
cttgctagctatgcactagacacatgttataaatattaattattaagcac
aacaagaattaactcatttgttcctcatagaaacctttaaaagtaggcac
ttctatttctgttgggccaatgaaaaaacaggtatagagagattaaagca
gaggggtccctgaggtcatggtctagcaaagggcagggcaagagtctctc
accaccctctgggaacttacatgttaggaaatgtgagcaagaaaagagac
caacttaatagcagcagcagcccaccatctttccgactgatcttcctaac
atctacagaggatcaagagggaagatgcttggacaactattccttcatgt
gctttgtgttgcatcagacaagctacagggactcctggtgtctgtattct
tttatgaattggagattttgatgctgactggataaggattttaattttag
aaaagaagaaaggttgaatttgtcgctcatgcaggtagatgtatgagctg
ggtggcccgtgaaggaaatatcactttggccatttgcatagattggagaa
tcgggtgggatactggagaaggagactgacgcattttgtggaatctgaaa
tgtttctttgtggtttagcattatggggaattttcttggcttgagttgtg
aaggtagcatgacccattctttgtgagggatgtgacctggttaccatttc
cagctgtacattgcttcattatttccacgcccacattttttctgttggtg
gccaaggaagggctcattgctgatactgcatcaccaccttgagactgcag
tatcatatttcacccagatattctaaactctgctgagaattcgtatgtgg
ttagtgagactgaagcaatgcctctgcatcttcttatgagaaga
gaattctcttaagaagaaatcaaactatgtttcacagccccactgttcta
gagcaggactgggggtaccaaggacagcaagaggctgacttgggagcaag
ctgtgaaattcagagtatgactctacactgaattaggagactgaagtttt
cattccatatttgcagtattgaaatgagtattttttattatatgtgttaa
gcaaagcatatattcccttaaaataaactttgtttctaaaatgttatttt
cattattatgatgctataggaaaaaagtttagaggggaaataagtccacg
gggtggttttatataaaagccacagataaaagtgatccattatttcttaa
ctcaaagtcatctattgtaaataaatgtatcttttttaatgtatatgcaa
tttctactaaacagtaggaagcaaatgtttctgtaaaaacaagtatttca
taatatctagctggagattggtaaaggttttctcgagtttaaaaaaaatc
tatttttaattagtacattaattctctaaactacacataaatgagggagg
ccaaagcctgagcttgggaaactgtgctgagattactgttttaaagcagt
tggccagcgtgcactccctccgacatgacatgcaggccagcggggaagaa
aagcaggtgccatggcgacccatcagcacttcctccagccgagggtgact
gggcaagccgcgagtgagcggttaggtgcctgcagaaccacggtgacaag
gtctgcgtctgcagtgctaccctaggtaagctggagacatcaccaacagg
atcaacagtgtcttagagtccttgtgtactggggttaggaaggaagttca
ctggagacaacggaatcatttatgcactggagaaactttgccacatttca
gcctccaacactttaaattttgttgcagcaaagctaaatttcaaagcaga
tcctctgacctacaaccttgtatttatgtataaaacttgctaaccaagac
ttggagagatgcctcagagttagagtacagactggcttctttccagaggt
cttgagttcaattccagcaccacgtggtagctcacaacattctgtatgga
atcctgaatgccctcttctgtgaactgaaaacactaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_73798890_73800037
seq2: B6Ng01-180L09.b_43_1186 (reverse)

seq1  TCTTCTCATAGGAAAGATGCCAGA-GCATTGCTTTCCAGTCTCAACTAA-  48
      |||||||||| | |||||| |||| |||||||||  ||||||| ||||| 
seq2  TCTTCTCATAAG-AAGATG-CAGAGGCATTGCTT--CAGTCTC-ACTAAC  45

seq1  CACATACGAATTCTCAGCAGAGTTTAAGATATTCTGGGTGAATTATGATA  98
      ||||||||||||||||||||||||||  ||| |||||||||| |||||||
seq2  CACATACGAATTCTCAGCAGAGTTTAGAATA-TCTGGGTGAAATATGATA  94

seq1  CTGCAGTTCTC-AGGTGGTGATGCAGTATCAGCAATGAGCCCTTTCTTTG  147
      |||||| |||| |||||||||||||||||||||||||||||| ||| |||
seq2  CTGCAG-TCTCAAGGTGGTGATGCAGTATCAGCAATGAGCCC-TTCCTTG  142

seq1  GCCACCAACAG-AAAAATGTGGGCGTGGAAATAATGAAGCAATTGTACAG  196
      ||||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  GCCACCAACAGAAAAAATGTGGGCGTGGAAATAATGAAGCAA-TGTACAG  191

seq1  CTGGAAATGGTAACCAGGTCACATCCCTCACAAAGAATGGGTCATGCTAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATGGTAACCAGGTCACATCCCTCACAAAGAATGGGTCATGCTAC  241

seq1  CTTCACAACTCAAGCCAAGAAAATT-CCCATAATGCTAAACCACAAAGAA  295
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTTCACAACTCAAGCCAAGAAAATTCCCCATAATGCTAAACCACAAAGAA  291

seq1  ACATTTCAGATTCCACAAAATGCGTCAGTCTCCTTCTCCAGTATCCCACC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCAGATTCCACAAAATGCGTCAGTCTCCTTCTCCAGTATCCCACC  341

seq1  CGATTCTCCAATCTATGCAAATGGCCAAAGTGATATTTCCTTCACGGGCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTCTCCAATCTATGCAAATGGCCAAAGTGATATTTCCTTCACGGGCC  391

seq1  ACCCAGCTCATACATCTACCTGCATGAGCGACAAATTCAACCTTTCTTCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCTCATACATCTACCTGCATGAGCGACAAATTCAACCTTTCTTCT  441

seq1  TTTCTAAAATTAAAATCCTTATCCAGTCAGCATCAAAATCTCCAATTCAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAATTAAAATCCTTATCCAGTCAGCATCAAAATCTCCAATTCAT  491

seq1  AAAAGAATACAGACACCAGGAGTCCCTGTAGCTTGTCTGATGCAACACAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATACAGACACCAGGAGTCCCTGTAGCTTGTCTGATGCAACACAA  541

seq1  AGCACATGAAGGAATAGTTGTCCAAGCATCTTCCCTCTTGATCCTCTGTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATGAAGGAATAGTTGTCCAAGCATCTTCCCTCTTGATCCTCTGTA  591

seq1  GATGTTAGGAAGATCAGTCGGAAAGATGGTGGGCTGCTGCTGCTATTAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAGGAAGATCAGTCGGAAAGATGGTGGGCTGCTGCTGCTATTAAG  641

seq1  TTGGTCTCTTTTCTTGCTCACATTTCCTAACATGTAAGTTCCCAGAGGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTCTTTTCTTGCTCACATTTCCTAACATGTAAGTTCCCAGAGGGT  691

seq1  GGTGAGAGACTCTTGCCCTGCCCTTTGCTAGACCATGACCTCAGGGACCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAGACTCTTGCCCTGCCCTTTGCTAGACCATGACCTCAGGGACCC  741

seq1  CTCTGCTTTAATCTCTCTATACCTGTTTTTTCATTGGCCCAACAGAAATA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTTAATCTCTCTATACCTGTTTTTTCATTGGCCCAACAGAAATA  791

seq1  GAAGTGCCTACTTTTAAAGGTTTCTATGAGGAACAAATGAGTTAATTCTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCCTACTTTTAAAGGTTTCTATGAGGAACAAATGAGTTAATTCTT  841

seq1  GTTGTGCTTAATAATTAATATTTATAACATGTGTCTAGTGCATAGCTAGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGCTTAATAATTAATATTTATAACATGTGTCTAGTGCATAGCTAGC  891

seq1  AAGTACTATAAAGAAGTATTTGTGAGACAAAAAAAATCATAAGATCAGTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTATAAAGAAGTATTTGTGAGACAAAAAAAATCATAAGATCAGTG  941

seq1  TAGAATATGAAACCTTTGCCCCATTTTTACAATCATGCAGCGCCTTAGAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATATGAAACCTTTGCCCCATTTTTACAATCATGCAGCGCCTTAGAG  991

seq1  GAGTGGATAGAAAATGGGTCTTTGTCTTTGCTCTGTTCACTTCTGTCTCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGATAGAAAATGGGTCTTTGTCTTTGCTCTGTTCACTTCTGTCTCT  1041

seq1  CCGCCTTGCTTTTCTTTCACTGTATCCACTTTGAAACCTTTTTTCTGTGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTTGCTTTTCTTTCACTGTATCCACTTTGAAACCTTTTTTCTGTGT  1091

seq1  TCATATGTGGATGGTGTTTATTTTGATTATGCTTTCTTCGATCTTCAGAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGTGGATGGTGTTTATTTTGATTATGCTTTCTTCGATCTTCAGAA  1141

seq1  TTC  1148
      |||
seq2  TTC  1144

seq1: chr12_73627835_73628973
seq2: B6Ng01-180L09.g_68_1205

seq1  GAATTCTCTTAAGAAGAAATCAAACTATGTTTCACAGCCCCACTGTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAAGAAGAAATCAAACTATGTTTCACAGCCCCACTGTTCTA  50

seq1  GAGCAGGACTGGGGGTACCAAGGACAGCAAGAGGCTGACTTGGGAGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGACTGGGGGTACCAAGGACAGCAAGAGGCTGACTTGGGAGCAAG  100

seq1  CTGTGAAATTCAGAGTATGACTCTACACTGAATTAGGAGACTGAAGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAATTCAGAGTATGACTCTACACTGAATTAGGAGACTGAAGTTTT  150

seq1  CATTCCATATTTGCAGTATTGAAATGAGTATTTTTTATTATATGTGTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCATATTTGCAGTATTGAAATGAGTATTTTTTATTATATGTGTTAA  200

seq1  GCAAAGCATATATTCCCTTAAAATAAACTTTGTTTCTAAAATGTTATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCATATATTCCCTTAAAATAAACTTTGTTTCTAAAATGTTATTTT  250

seq1  CATTATTATGATGCTATAGGAAAAAAGTTTAGAGGGGAAATAAGTCCACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTATGATGCTATAGGAAAAAAGTTTAGAGGGGAAATAAGTCCACG  300

seq1  GGGTGGTTTTATATAAAAGCCACAGATAAAAGTGATCCATTATTTCTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTTTTATATAAAAGCCACAGATAAAAGTGATCCATTATTTCTTAA  350

seq1  CTCAAAGTCATCTATTGTAAATAAATGTATCTTTTTTAATGTATATGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGTCATCTATTGTAAATAAATGTATCTTTTTTAATGTATATGCAA  400

seq1  TTTCTACTAAACAGTAGGAAGCAAATGTTTCTGTAAAAACAAGTATTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTAAACAGTAGGAAGCAAATGTTTCTGTAAAAACAAGTATTTCA  450

seq1  TAATATCTAGCTGGAGATTGGTAAAGGTTTTCTCGAGTTTAAAAAAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCTAGCTGGAGATTGGTAAAGGTTTTCTCGAGTTTAAAAAAAATC  500

seq1  TATTTTTAATTAGTACATTAATTCTCTAAACTACACATAAATGAGGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAATTAGTACATTAATTCTCTAAACTACACATAAATGAGGGAGG  550

seq1  CCAAAGCCTGAGCTTGGGAAACTGTGCTGAGATTACTGTTTTAAAGCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCCTGAGCTTGGGAAACTGTGCTGAGATTACTGTTTTAAAGCAGT  600

seq1  TGGCCAGCGTGCACTCCCTCCGACATGACATGCAGGCCAGCGGGGAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGCGTGCACTCCCTCCGACATGACATGCAGGCCAGCGGGGAAGAA  650

seq1  AAGCAGGTGCCATGGCGACCCATCAGCACTTCCTCCAGCCGAGGGTGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGTGCCATGGCGACCCATCAGCACTTCCTCCAGCCGAGGGTGACT  700

seq1  GGGCAAGCCGCGAGTGAGCGGTTAGGTGCCTGCAGAACCACGGTGACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGCCGCGAGTGAGCGGTTAGGTGCCTGCAGAACCACGGTGACAAG  750

seq1  GTCTGCGTCTGCAGTGCTACCCTAGGTAAGCTGGAGACATCACCAACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCGTCTGCAGTGCTACCCTAGGTAAGCTGGAGACATCACCAACAGG  800

seq1  ATCAACAGTGTCTTAGAGTCCTTGTGTACTGGGGTTAGGAAGGAAG-TCA  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATCAACAGTGTCTTAGAGTCCTTGTGTACTGGGGTTAGGAAGGAAGTTCA  850

seq1  CTGGAGACAACGGAATCATTTATGCACTGGAG-AACCTTGCCACAATTTC  898
      |||||||||||||||||||||||||||||||| ||| ||||||| |||||
seq2  CTGGAGACAACGGAATCATTTATGCACTGGAGAAACTTTGCCAC-ATTTC  899

seq1  AGCCTCCAACACTTTAAATTTTGTTGCAGCAAAGCTAAATTTCAAAAGCA  948
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCCTCCAACACTTTAAATTTTGTTGCAGCAAAGCTAAATTTC-AAAGCA  948

seq1  GATCCTCTGACCTACAA-CTTGTATTTTATGTATAAAACTTGCTAACC-A  996
      ||||||||||||||||| |||||| ||||||||||||||||||||||| |
seq2  GATCCTCTGACCTACAACCTTGTA-TTTATGTATAAAACTTGCTAACCAA  997

seq1  GAC-TGGAGAGATGGCTCAGAAGTTAAGAGTACAGACT-GCT--CTTCCA  1042
      ||| |||||||||| ||||| |||| |||||||||||| |||   |||||
seq2  GACTTGGAGAGATGCCTCAG-AGTT-AGAGTACAGACTGGCTTCTTTCCA  1045

seq1  GAGGTCCTGAGTTCAATTCCCAGCAACCACGTGGTAGCTCACAACCATCT  1092
      |||||| ||||||||||| ||||| ||||||||||||||||||||  |||
seq2  GAGGTCTTGAGTTCAATT-CCAGC-ACCACGTGGTAGCTCACAACATTCT  1093

seq1  GTAATGGGAT-CTG-ATGCCCTCTTCTGGTGTATCTGAAAACAACTACA  1139
      || |||| || ||| |||||||||||| ||| | |||||||| ||||||
seq2  GT-ATGGAATCCTGAATGCCCTCTTCT-GTG-AACTGAAAAC-ACTACA  1138