BAC Information

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BAC

Clone NameB6Ng01-181D17
Chromosome12 (Build37)
Map Location 27,991,258 - 27,992,325
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009, LOC669327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181D17.bB6Ng01-181D17.g
ACCGA007449GA007450
length1,0741,159
definitionB6Ng01-181D17.b B6Ng01-181D17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaggtatataatggtggccagaaccttaagaacctgtcctcctg
tgggtctcaccaaccaaccagagtcatgcctatgaaaagtagtgttgaga
atttcattattcaaaaaaagtcagacactgggaatagcccagtgtctgcc
actgcactgacagatgacagtcacaacctacatgacagtaagactatggt
cagccgtaagtcaaaggctttcttggacccaggaaaaccttagcgacatc
atagtaggtgcaacaagcctgttgccaaagggggaggtgttagatgtgtt
ccttcgaggtacttagagcatcacagtgagagagtaggatgtcaaacgca
agtgactccctggagaaaggagtggttatttggtacttcaggggtgtgaa
ctgaatgtgatatagaaggaatggttgagatggaaggtgatgatgtttgc
agcacacttcctataggagtgggatgcttttcttgttctgcctctgcaag
ggctaaagaatgccacaggtctcacctcaagttcaagtgagagcaaatgt
caaagtctggatttgaatcatgaatgtcctctgcataatgttaactcctc
cccaactctgcctctttgactgcaaggattctcttcagacagagaaacaa
accagagagcatctacctgcctctgtctgatgtgtggctggcatcagcct
catccctgacaaccatctttgacttgtgaggttaacatcagggcaaaaga
acatgtggacagtgttagaaaatgctgggctcaaaggtcactaacaactc
ccagataaatccccctggaatctccctggtgtaaggaatgggagaagatt
caccccttgctcacttttagttcaggatcgcattttcttacttttgtaaa
atggcagctatttaattaaacaaaaatttctgctaaaaaatatgtataaa
atttagagaataaaacaaaacaactgaaaagttctcaaaaaaggcctttt
tctttgcatataatttctagaagctaaacgtgcagatgccaggcttttgg
actggctactagcattcaaagtca

gaattctcttgtgagccagaaagatgtatcttcatgtctctggaatccta
aagccatcccactagatttagaaaacaaaacaaaaacaaactaaaatatt
tggttcaaacatggattttaacaaacctttaatttcagctttaaacatga
aatcaacaacttttcataaatattctagctgagatcacaccagagcttgg
ttatctaactatgatacaagataatcaagtaagaacataaaaccagagac
actgaaacttatagaggagaaagtggggaaaagccttgaagatatgggca
caggggaaaaattcctgaatggaacagcaatggcttgcgctgtaagatca
agaattgacaaatgggacctcatgaaactgcaaagcttctgcaaggcaaa
agacaccgtcagtaagacaaaaagaccaccaacagattgggaaaggatct
ttacctatcctagatcagataggggactaatatccaatatatataaagaa
ctcaagaaggtggactccagaaaatcaaataaccccattaaaaaatgggg
ctcagaactgaacaaagaattctcacccgaggaataccgaatggcagaga
agcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatc
aaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaa
aaattcaggtgacagcagatgctggcgaggacgtggagaaagaggaacac
tcctccattgttggtgggattacaagcttgtacaaccactctggaaatca
gtctggcggttcctcagaaaattggacatagtactactggaggatccagc
aatacctctcctgggcatatatccagaagatgttccaaccggtaagaagg
acacatgctccactatgttcatagcagcccttatttataatagccagaag
ctggaaaagaacccagatgcccctcaacagaggaatggataacagaaaaa
tggtggttacatttacacattggagtactactcagaatattaaaaagatg
attatgaaattcctagccaaatggatggacctggagggcatcatcctgag
tggaagttaaccacattcacaaaggaactccacacaatattgtacctcac
tgattagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_27991258_27992325
seq2: B6Ng01-181D17.b_44_1117

seq1  GAATTCTAGGTATATAATGGTGGCCAGAACCTTAAGAACCTGTCCTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGTATATAATGGTGGCCAGAACCTTAAGAACCTGTCCTCCTG  50

seq1  TGGGTCTCACCAACCAACCAGAGTCATGCCTATGAAAAGTAGTGTTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTCACCAACCAACCAGAGTCATGCCTATGAAAAGTAGTGTTGAGA  100

seq1  ATTTCATTATTCAAAAAAAGTCAGACACTGGGAATAGCCCAGTGTCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTATTCAAAAAAAGTCAGACACTGGGAATAGCCCAGTGTCTGCC  150

seq1  ACTGCACTGACAGATGACAGTCACAACCTACATGACAGTAAGACTATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACTGACAGATGACAGTCACAACCTACATGACAGTAAGACTATGGT  200

seq1  CAGCCGTAAGTCAAAGGCTTTCTTGGACCCAGGAAAACCTTAGCGACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGTAAGTCAAAGGCTTTCTTGGACCCAGGAAAACCTTAGCGACATC  250

seq1  ATAGTAGGTGCAACAAGCCTGTTGCCAAAGGGGGAGGTGTTAGATGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGGTGCAACAAGCCTGTTGCCAAAGGGGGAGGTGTTAGATGTGTT  300

seq1  CCTTCGAGGTACTTAGAGCATCACAGTGAGAGAGTAGGATGTCAAACGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGAGGTACTTAGAGCATCACAGTGAGAGAGTAGGATGTCAAACGCA  350

seq1  AGTGACTCCCTGGAGAAAGGAGTGGTTATTTGGTACTTCAGGGGTGTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTCCCTGGAGAAAGGAGTGGTTATTTGGTACTTCAGGGGTGTGAA  400

seq1  CTGAATGTGATATAGAAGGAATGGTTGAGATGGAAGGTGATGATGTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGTGATATAGAAGGAATGGTTGAGATGGAAGGTGATGATGTTTGC  450

seq1  AGCACACTTCCTATAGGAGTGGGATGCTTTTCTTGTTCTGCCTCTGCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACTTCCTATAGGAGTGGGATGCTTTTCTTGTTCTGCCTCTGCAAG  500

seq1  GGCTAAAGAATGCCACAGGTCTCACCTCAAGTTCAAGTGAGAGCAAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAGAATGCCACAGGTCTCACCTCAAGTTCAAGTGAGAGCAAATGT  550

seq1  CAAAGTCTGGATTTGAATCATGAATGTCCTCTGCATAATGTTAACTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCTGGATTTGAATCATGAATGTCCTCTGCATAATGTTAACTCCTC  600

seq1  CCCAACTCTGCCTCTTTGACTGCAAGGATTCTCTTCAGACAGAGAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTCTGCCTCTTTGACTGCAAGGATTCTCTTCAGACAGAGAAACAA  650

seq1  ACCAGAGAGCATCTACCTGCCTCTGTCTGATGTGTGGCTGGCATCAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGAGCATCTACCTGCCTCTGTCTGATGTGTGGCTGGCATCAGCCT  700

seq1  CATCCCTGACAACCATCTTTGACTTGTGAGGTTAACATCAGGGCAAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGACAACCATCTTTGACTTGTGAGGTTAACATCAGGGCAAAAGA  750

seq1  ACATGTGGACAGTGTTAGAAAATGCTGGGCTCAAAGGTCACTAACAACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGACAGTGTTAGAAAATGCTGGGCTCAAAGGTCACTAACAACTC  800

seq1  CCAGATAAATCCCCCTGGAATCTCCCTGGTGTAAGGAATGGGAGAAGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAAATCCCCCTGGAATCTCCCTGGTGTAAGGAATGGGAGAAGATT  850

seq1  CACCCCTTGCTCAC-TTTAGTTCAGGATCGCATTTTCTTAC-TTTGTAAA  898
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  CACCCCTTGCTCACTTTTAGTTCAGGATCGCATTTTCTTACTTTTGTAAA  900

seq1  ATGGCAGCTATTTATTTAAACAAAAATTTCTGCTAAAAAATATGTATAAA  948
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATGGCAGCTATTTAATTAAACAAAAATTTCTGCTAAAAAATATGTATAAA  950

seq1  ATTTAGAG-ATAAAACAAAACAACTGAAA--GTCTC-AAAAAGGCC-TTT  993
      |||||||| ||||||||||||||||||||   |||| ||||||||| |||
seq2  ATTTAGAGAATAAAACAAAACAACTGAAAAGTTCTCAAAAAAGGCCTTTT  1000

seq1  TCTTTGGCAATAATTTCTAGAGCTTAAACGTGCAGAATGCCAGGCTTTGG  1043
      ||||||   ||||||||||||   ||||||||||| |||||||||||| |
seq2  TCTTTGCATATAATTTCTAGAAGCTAAACGTGCAG-ATGCCAGGCTTTTG  1049

seq1  GACTGGCTACCAGCATTCAGAGTCA  1068
      |||||||||| |||||||| |||||
seq2  GACTGGCTACTAGCATTCAAAGTCA  1074


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