BAC Information

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BAC

Clone NameB6Ng01-181O22
Chromosome12 (Build37)
Map Location 88,685,039 - 88,686,178
singlet/doubletsinglet
Overlap geneSptlc2
Upstream geneLOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3
Downstream geneLOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181O22.bB6Ng01-181O22.g
ACCGA007962GA007963
length1,1961,132
definitionB6Ng01-181O22.b B6Ng01-181O22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ttagaataccttctgcttctattttgtggaatagtttgtgcagaactgta
attagatcttctttgaatatctgatagaactctgcactaaacccacctgg
ttctgggctttttttttattgggagactaataatgactgcttctatttct
ttaggggatatagaactgtttagatcattaacctgatcctgatttaactt
tggtattgatatctgtctagaaatttgtccatttgatccaggttctccag
ttttgttgagtatagccttttgtagaaggatctgatggtgttttggattt
cttcacgatctgttgttatgtctcctttttcatttctgatttgttaatta
ggatgctgtccctgtgccctctagtgagtctggctaagggtttatctatc
tggttgattttctcaaagaaccagctcctcatttggttgattctttgaat
agttcttcttgtttccacttggttgatttcgcccctgagtttgattattt
cctgccgtctactcctcttgggtgaatttgcttccttttgttctagagct
tttaggtgtgttgtcaagctgctagtgtgtgctctctctagtttcttttt
ggaggcactcagagctatgagttttcctcttagaaatactttcattgtgt
cccataagtttgggtatcttgaggcttcattttaattaaactctaaaaag
tctttcatttttttctttattccttccttaaccaaggtatcattgagatg
agtgttgttcagtttccatgtaaatgttggctttttattatttatgttat
tattgaagatcagccttagtccatggtgatctgataggatgcatgggaca
atttcaatatttttgtatctgttaaggcctgttttgagaccaattatatg
gtcaattttggagaaagtaccatgaggtgatgagaagaaaggtatatcct
tttgttttaggataaatgttctgtagatatctgttaagtccatttgtttc
aatacttctgtagtttcactgtgtccctgtttgtttctgtttcacgatct
gtcaatgatgaaagtggtgtgttgaattctccactattatttgggtgagg
gtgcaatgggtgcttgagctttacctagggtgtcttaggattggctgctt
gccattgggagcatgaatatttcagaatggagaggtcactctttgg
gaattcagagacagcccaggctataagctaagttacaggctagccaggca
atttagaaaggtactaaaaacataatataccctttttcactgagcacttt
ggggctgctgtacagaaatcagacgattgtgcgaacatgtgagtgtggtg
ttctttctttcttccttttttttttccttccagtttttcgagacagggtt
tctctgtgtagccttgtctgtcctggaactcactctatagacaaggctgg
ctccgaactcataaatctgcctgcctctgcctcccaagtgctgggattaa
aggtgtgcgccaccactgccaggcttgtggtgctctttctagtaaacaag
ttcagaaaggatttaaggcccaaacaaaggagctgaagagttatgtcata
tctggacataacacattaaataaaggaggagaaagaatcacaggtatgaa
caagaggatcacagtatgtatggctaaaaagtttcacaacaacaatgaaa
aagacctcaatcacatacaacagaactgtctcaggctcgctgcagaacat
tttacagaagataaaacaaacataaaagttatcgccatccaatctttccc
tccacagggacagacctaacattttggtatgtattattctacaatttcat
ctacttacacatatcttagtaagagaagatattaaacatacagctcgatg
atctttctccctctgtgtgttttataattaataaactattgtaacagtgc
aagaagatattctcactcagggaacaagttttagcttgaagacaccagcc
tctgtcctcctaccttctctttacattactgcacctcaacatttgtctgt
tctattttccttatgcaggtctacgtatgtatgtgagtggtatgtgtata
tatgcttatgtatatatacacacatgcaggtacacatccatacatgtgca
ttgtagaggccaggggttgatgtcatgtgtctttctcaatcaatatttgt
ctaggattttactgctgtgaacagaccaccacgacaagcaactcttagat
gacattacttgcgcctgcttaaggctcagaaggttcagttcattatcatc
aagaggaaacatggcatcatcagtagacctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_88685039_88686178
seq2: B6Ng01-181O22.g_67_1198

seq1  GAATTCAGAGACAGCCCAGGCTATAAGCTAAGTTACAGGCTAGCCAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGACAGCCCAGGCTATAAGCTAAGTTACAGGCTAGCCAGGCA  50

seq1  ATTTAGAAAGGTACTAAAAACATAATATACCCTTTTTCACTGAGCACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAAAGGTACTAAAAACATAATATACCCTTTTTCACTGAGCACTTT  100

seq1  GGGGCTGCTGTACAGAAATCAGACGATTGTGCGAACATGTGAGTGTGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGCTGTACAGAAATCAGACGATTGTGCGAACATGTGAGTGTGGTG  150

seq1  TTCTTTCTTTCTTCCTTTTTTTTTTCCTTCCAGTTTTTCGAGACAGGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTCCTTTTTTTTTTCCTTCCAGTTTTTCGAGACAGGGTT  200

seq1  TCTCTGTGTAGCCTTGTCTGTCCTGGAACTCACTCTATAGACAAGGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTAGCCTTGTCTGTCCTGGAACTCACTCTATAGACAAGGCTGG  250

seq1  CTCCGAACTCATAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGAACTCATAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAA  300

seq1  AGGTGTGCGCCACCACTGCCAGGCTTGTGGTGCTCTTTCTAGTAAACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGCGCCACCACTGCCAGGCTTGTGGTGCTCTTTCTAGTAAACAAG  350

seq1  TTCAGAAAGGATTTAAGGCCCAAACAAAGGAGCTGAAGAGTTATGTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAGGATTTAAGGCCCAAACAAAGGAGCTGAAGAGTTATGTCATA  400

seq1  TCTGGACATAACACATTAAATAAAGGAGGAGAAAGAATCACAGGTATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACATAACACATTAAATAAAGGAGGAGAAAGAATCACAGGTATGAA  450

seq1  CAAGAGGATCACAGTATGTATGGCTAAAAAGTTTCACAACAACAATGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGATCACAGTATGTATGGCTAAAAAGTTTCACAACAACAATGAAA  500

seq1  AAGACCTCAATCACATACAACAGAACTGTCTCAGGCTCGCTGCAGAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTCAATCACATACAACAGAACTGTCTCAGGCTCGCTGCAGAACAT  550

seq1  TTTACAGAAGATAAAACAAACATAAAAGTTATCGCCATCCAATCTTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGAAGATAAAACAAACATAAAAGTTATCGCCATCCAATCTTTCCC  600

seq1  TCCACAGGGACAGACCTAACATTTTGGTATGTATTATTCTACAATTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGGGACAGACCTAACATTTTGGTATGTATTATTCTACAATTTCAT  650

seq1  CTACTTACACATATCTTAGTAAGAGAAGATATTAAACATACAGCTCGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTACACATATCTTAGTAAGAGAAGATATTAAACATACAGCTCGATG  700

seq1  ATCTTTCTCCCTCTGTGTGTTTTATAATTAATAAACTATTGTAACAGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTCCCTCTGTGTGTTTTATAATTAATAAACTATTGTAACAGTGC  750

seq1  AAGAAGATATTCTCACTCAGGGAACAAGTTTTAGCTTGAAGACACCAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGATATTCTCACTCAGGGAACAAGTTTTAGCTTGAAGACACCAGCC  800

seq1  TCTGTCCTCCTACCTTCTCTTTACATTACTGCACCTCAACATTTGTCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTCCTACCTTCTCTTTACATTACTGCACCTCAACATTTGTCTGT  850

seq1  TCTATTTTCCTTATGCAGGTCTACGTATGTATGTGAGTGGTATGTGTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTCCTTATGCAGGTCTACGTATGTATGTGAGTGGTATGTGTATA  900

seq1  TATGCTTATGTATATATACACACATGCAGGTACACATCCATACATGTGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTATGTATATATACACACATGCAGGTACACATCCATACATGTGCA  950

seq1  TTTGTAGAGGCCAGGGGTTGATGTCATGTGTCTTTCTCAATC-ATATTTG  999
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  -TTGTAGAGGCCAGGGGTTGATGTCATGTGTCTTTCTCAATCAATATTTG  999

seq1  TCTTAGGGTTTTACTGCTGTGAACAGA-CACCACGACCAAGGCAACTCTT  1048
      || |||| ||||||||||||||||||| |||||||||  | |||||||||
seq2  TC-TAGGATTTTACTGCTGTGAACAGACCACCACGAC--AAGCAACTCTT  1046

seq1  AGAAGGACATTTAACTGGGGCTGGCTTACAGGTTCAG-AGGTTCAGTCCA  1097
      || | ||||||  ||| | ||  ||||| ||| |||| ||||||||| ||
seq2  AG-ATGACATT--ACTTGCGCCTGCTTA-AGGCTCAGAAGGTTCAGTTCA  1092

seq1  TTATCATCAAGGAGGGACCATGGCATCATCCAGGAAGACCTGA  1140
      |||||||||| |||| | ||||||||||||   | ||||||||
seq2  TTATCATCAA-GAGGAAACATGGCATCATC--AGTAGACCTGA  1132