BAC Information

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BAC

Clone NameB6Ng01-183B21
Chromosome12 (Build37)
Map Location 58,202,489 - 58,330,199
singlet/doubletdoublet
Overlap geneSlc25a21
Upstream geneLOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9
Downstream geneAU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761, Sstr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183B21.bB6Ng01-183B21.g
ACCGA008828GA008829
length1,193978
definitionB6Ng01-183B21.b B6Ng01-183B21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,202,489 - 58,203,674)(58,329,636 - 58,330,199)
sequence
gaattctacattctcaaaaaattctttgctatgaaataggacatgaagtc
tatttctatttccctcagatatgagctagtgtgttatcatctgagtaaga
aatgcagacagtagcattctctgtgaagagtcctagagatctgacttatt
gcaaatactaggaatgtgctctaccactgagctaacctcaaagtctgatg
cacaatatcccaagcattttccaaatttatttttcttggaatgttttctc
tgggaagtctgagctgatatctcttcttaggtagttgtagttgacaatcc
caattgagaatttctcaaatttatacacagctgaataccaccaagtgacc
acaactgatactgcatggagcaaaagaattccccagttaagcccttaatc
tataaaaccatatcatgtaatagaatgcttccttgttgtaagctattgta
tttaaagttattatacataatagagaactggaagaaaatgttgtgcctaa
aaatgatgttcagtggtaataaaaccctagaacacaaggccttgggttta
atgtgcgtggtaggcagaagctggaagatcatcaaggagaatacaacagc
caagtggctctggctccagcttgaacccttacctcatgtgaggaaccttc
tggtatgtgttccttttatcgtgcctctgcagtgcctccccctccacaat
agagtgtaccctcggaaaccgtgaacaaagatagagcagttgtttctgtc
agtatatttggtcacagaaaaagaaagggaatccgcacagatgtggatcc
cgagaataaggttactgctttgacaaacatgaccatgtgattcttaggcc
tttggaagtggtttgcaagaagaatgtgagacggtctggagctgtggcca
gagaaaccctggaatgctgtaaacagggcttaatgggccattcttaccat
cccagtacaacattgggaggcttcttcttgaatggcaccatttctgtaac
aactgtcttcaactttgccttttctgtaactttaaatgcattcacactca
ccccacacatgcatgttctcaaatcttttagttctgctttttctgtgcaa
tcccttactgttaatgtttgaataaaagcatggggcagtattccatgaca
tgtctgcaatgtcatgctgtcctaaaattttctcttaccaatc
gaattccaggacagcctgggatacatagcaaaagtttccaaaaaagaggc
cacactaacttctaaacaatgagccctagcagggcagtggtggcacacac
ctttaatccagcacttgggaggcagaggcaggcggatttctgggctcaag
gccagcctggtctacaaagtgagttccaggacagccagggctacagagaa
actgtctcaaaaaaacaaaaaagaaaaaaatgagcccccataaaatgaaa
aattgtgtactttcagtatacagtagtgttccagagattaagatagcaag
ggaagatcaagtaagaaaaacactgaaattcagcacagcagacataaaat
cttgaagctccatattcaacagctggaattctttggactccaataagctt
gcacaaccctgtgggcactagctctcttgcctataagtcatgtagccttc
catccacacctgcacctcagtggatgtcccacagttgtagtatctccaac
atcacctcccaagcgtcatacaagagcctctctggacctcttcaggtgtg
aagggatttgtgcaggcctgtgctataacgttccagaaagctgaggagac
cagcatctttcatgtggcatctttcatgcctgataatcagtgccactcag
acaaagctgccaagttcttggccattttggaatagaggtgcagtggccac
tgtgtacttttaaggctgatctgagaaaacattgtaatgggtgcttgttt
tatgcagagagtggtattctcagttcaccctctctccattcagatgaatt
tgcaaattctcaagttggagcctttgatggttgggtctttacccacagga
cacctttgctattgtcccagtgcagagtagatttctatttagtgccacag
atctctttaatgatcacagctgtttttgtcagccagccattttcttgtct
tgcagcttttaaacttgctcaacaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_58202489_58203674
seq2: B6Ng01-183B21.b_45_1237

seq1  GAATTCTACATTCTCAAAAAATTCTTTGCTATGAAATAGGACATGAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATTCTCAAAAAATTCTTTGCTATGAAATAGGACATGAAGTC  50

seq1  TATTTCTATTTCCCTCAGATATGAGCTAGTGTGTTATCATCTGAGTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTATTTCCCTCAGATATGAGCTAGTGTGTTATCATCTGAGTAAGA  100

seq1  AATGCAGACAGTAGCATTCTCTGTGAAGAGTCCTAGAGATCTGACTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGACAGTAGCATTCTCTGTGAAGAGTCCTAGAGATCTGACTTATT  150

seq1  GCAAATACTAGGAATGTGCTCTACCACTGAGCTAACCTCAAAGTCTGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATACTAGGAATGTGCTCTACCACTGAGCTAACCTCAAAGTCTGATG  200

seq1  CACAATATCCCAAGCATTTTCCAAATTTATTTTTCTTGGAATGTTTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATATCCCAAGCATTTTCCAAATTTATTTTTCTTGGAATGTTTTCTC  250

seq1  TGGGAAGTCTGAGCTGATATCTCTTCTTAGGTAGTTGTAGTTGACAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGTCTGAGCTGATATCTCTTCTTAGGTAGTTGTAGTTGACAATCC  300

seq1  CAATTGAGAATTTCTCAAATTTATACACAGCTGAATACCACCAAGTGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGAGAATTTCTCAAATTTATACACAGCTGAATACCACCAAGTGACC  350

seq1  ACAACTGATACTGCATGGAGCAAAAGAATTCCCCAGTTAAGCCCTTAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGATACTGCATGGAGCAAAAGAATTCCCCAGTTAAGCCCTTAATC  400

seq1  TATAAAACCATATCATGTAATAGAATGCTTCCTTGTTGTAAGCTATTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAACCATATCATGTAATAGAATGCTTCCTTGTTGTAAGCTATTGTA  450

seq1  TTTAAAGTTATTATACATAATAGAGAACTGGAAGAAAATGTTGTGCCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTTATTATACATAATAGAGAACTGGAAGAAAATGTTGTGCCTAA  500

seq1  AAATGATGTTCAGTGGTAATAAAACCCTAGAACACAAGGCCTTGGGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATGTTCAGTGGTAATAAAACCCTAGAACACAAGGCCTTGGGTTTA  550

seq1  ATGTGCGTGGTAGGCAGAAGCTGGAAGATCATCAAGGAGAATACAACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCGTGGTAGGCAGAAGCTGGAAGATCATCAAGGAGAATACAACAGC  600

seq1  CAAGTGGCTCTGGCTCCAGCTTGAACCCTTACCTCATGTGAGGAACCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGCTCTGGCTCCAGCTTGAACCCTTACCTCATGTGAGGAACCTTC  650

seq1  TGGTATGTGTTCCTTTTATCGTGCCTCTGCAGTGCCTCCCCCTCCACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGTGTTCCTTTTATCGTGCCTCTGCAGTGCCTCCCCCTCCACAAT  700

seq1  AGAGTGTACCCTCGGAAACCGTGAACAAAGATAGAGCAGTTGTTTCTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTACCCTCGGAAACCGTGAACAAAGATAGAGCAGTTGTTTCTGTC  750

seq1  AGTATATTTGGTCACAGAAAAAGAAAGGGAATCCGCACAGATGTGGATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATTTGGTCACAGAAAAAGAAAGGGAATCCGCACAGATGTGGATCC  800

seq1  CGAGAATAAGGTTACTGCTTTGACAAACATGACCATGTGATTCTTAGGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAATAAGGTTACTGCTTTGACAAACATGACCATGTGATTCTTAGGCC  850

seq1  TTTGGAAGTGGTTTGCAAGAAGAATGTGAGACGGTCTGGAGCTGTGGCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAGTGGTTTGCAAGAAGAATGTGAGACGGTCTGGAGCTGTGGCCA  900

seq1  GAGAAACCCTGGAATGCTGTAAACAGGGCTTAATGGGCCATTCTTACCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCCTGGAATGCTGTAAACAGGGCTTAATGGGCCATTCTTACCAT  950

seq1  CCCAGTACAACATT-GGAGGCTTC-TCTTGAATGGCACCCATTTCTGTAA  998
      |||||||||||||| ||||||||| |||||||||||| ||||||||||||
seq2  CCCAGTACAACATTGGGAGGCTTCTTCTTGAATGGCA-CCATTTCTGTAA  999

seq1  CAACTGTCTTCA--CTTGCCTTTTCTGTAACTTTAAATGCATTCACACTC  1046
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  CAACTGTCTTCAACTTTGCCTTTTCTGTAACTTTAAATGCATTCACACTC  1049

seq1  ACCCACACA-ATGCATGTTCCTCAAATCTTTTAGTTCTGCTTTTTCTGTG  1095
      |||| |||| ||||||||| ||||||||||||||||||||||||||||||
seq2  ACCC-CACACATGCATGTT-CTCAAATCTTTTAGTTCTGCTTTTTCTGTG  1097

seq1  CAAT-CCTTACTG-TAATGTTTG-ATAAAAGCAATGGGCAGTA-TCCATG  1141
      |||| |||||||| ||||||||| |||||||||  |||||||| ||||||
seq2  CAATCCCTTACTGTTAATGTTTGAATAAAAGCATGGGGCAGTATTCCATG  1147

seq1  ACATGGTCTGC-ATGTCATGCTGTCTTAAAATTTTCTC-TACCAATC  1186
      |||| |||||| ||||||||||||| |||||||||||| ||||||||
seq2  ACAT-GTCTGCAATGTCATGCTGTCCTAAAATTTTCTCTTACCAATC  1193

seq1: chr12_58329636_58330199
seq2: B6Ng01-183B21.g_68_631 (reverse)

seq1  TGCACAAATCCCTTCACACCTGAAGAGGTCCAGAGAGGCTCTTGTATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAATCCCTTCACACCTGAAGAGGTCCAGAGAGGCTCTTGTATGAC  50

seq1  GCTTGGGAGGTGATGTTGGAGATACTACAACTGTGGGACATCCACTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGAGGTGATGTTGGAGATACTACAACTGTGGGACATCCACTGAGG  100

seq1  TGCAGGTGTGGATGGAAGGCTACATGACTTATAGGCAAGAGAGCTAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTGTGGATGGAAGGCTACATGACTTATAGGCAAGAGAGCTAGTGC  150

seq1  CCACAGGGTTGTGCAAGCTTATTGGAGTCCAAAGAATTCCAGCTGTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGGTTGTGCAAGCTTATTGGAGTCCAAAGAATTCCAGCTGTTGAA  200

seq1  TATGGAGCTTCAAGATTTTATGTCTGCTGTGCTGAATTTCAGTGTTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGCTTCAAGATTTTATGTCTGCTGTGCTGAATTTCAGTGTTTTTC  250

seq1  TTACTTGATCTTCCCTTGCTATCTTAATCTCTGGAACACTACTGTATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGATCTTCCCTTGCTATCTTAATCTCTGGAACACTACTGTATACT  300

seq1  GAAAGTACACAATTTTTCATTTTATGGGGGCTCATTTTTTTCTTTTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTACACAATTTTTCATTTTATGGGGGCTCATTTTTTTCTTTTTTGT  350

seq1  TTTTTTGAGACAGTTTCTCTGTAGCCCTGGCTGTCCTGGAACTCACTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGACAGTTTCTCTGTAGCCCTGGCTGTCCTGGAACTCACTTTG  400

seq1  TAGACCAGGCTGGCCTTGAGCCCAGAAATCCGCCTGCCTCTGCCTCCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTTGAGCCCAGAAATCCGCCTGCCTCTGCCTCCCAA  450

seq1  GTGCTGGATTAAAGGTGTGTGCCACCACTGCCCTGCTAGGGCTCATTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGATTAAAGGTGTGTGCCACCACTGCCCTGCTAGGGCTCATTGTT  500

seq1  TAGAAGTTAGTGTGGCCTCTTTTTTGGAAACTTTTGCTATGTATCCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTTAGTGTGGCCTCTTTTTTGGAAACTTTTGCTATGTATCCCAGG  550

seq1  CTGTCCTGGAATTC  564
      ||||||||||||||
seq2  CTGTCCTGGAATTC  564