BAC Information

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BAC

Clone NameB6Ng01-184B19
Chromosome12 (Build37)
Map Location 62,771,984 - 62,773,157
singlet/doubletsinglet
Overlap geneLrfn5
Upstream geneLOC100040300, LOC665677, Nanog-ps2, LOC665699
Downstream geneLOC665707, LOC100040403, LOC665713, LOC622746, LOC100040438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184B19.bB6Ng01-184B19.g
ACCGA009569GA009570
length1,1641,081
definitionB6Ng01-184B19.b B6Ng01-184B19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgttgctgtcagtttggtggtgcttctgtgctgatgccttat
gttaatgagtggccttgtctacccgcctcttccctcaggagtttgacacc
atatttctagacatgtttgctaatagcaagatcgcatcagtgccttccaa
atgcagccaaagatataaaagggatttatttagaaagtaacaaagattcg
tctgaaacctattaaatgcaaagcacttaggtaatcagttgcgtcttagt
gaaggtggatttcaagatatgtactgaacacaatgtttttggttggcttt
atttgagaatattttcaaagttttttttttaatttcttctttttgtactg
agaaatgcataatttagcatgttcttactctgatcttcatttgggaatta
ctaaatctagtttatacccgcttcttatagtaaggtaagctttcccagtc
aagttattcttctattgatgattcatgttttataggtgtatatggattgt
atattctaagttcatgtatgtaaatatataaaatgtaaaaatcacattga
tctggttgagcttgttgcttatagtctcataaaaatgtttaaaagtataa
aattaattaactattaataagtactaggcattgcacggtgctacttctta
ttaaatagctccactaaaaggaaatattcagcacaatatatcacataagc
atagtagcatcaatcatattataagaaataatttataaatcttaaatatg
tagtttgtgcaggataacttaaatattatttgttattaaaacattcttaa
tgtttagagagaacaataaattatggagatcttctttctattatgtattc
acaagacagtttaacatgcatatgcatgaactcacacaatgtgtatatat
gagaacattttctattcagacatgattatgtataactttttgtttcctga
acagttttctttcaaacataagttagaaagaggtgaatgtagaagtatgc
tttttcctgccaaaactaaaatgatatagaaaataaaaacaatagtgggt
tagtcacctagctccctgagcattcttggagttggaggagaatcagcttt
tctttattttttaattttttttattctccattttcctataattattccag
gatccagtacaaac

gaattcccccatccctatcatctacagccatctattctattcccctttcc
cagagagatttatctgtctcccctagtctcttacactatacctgacctct
gtggttctacagactgtggcttaattatcattgacttaacagttactttt
agattttcaaactttgtggagcacagatttttaaactgttcttattattc
cctagatttcctcagtgtttgttgttatgtcctccattttcctctcaaat
tttctttattattattatttttagtttacatccaactcactctgcccttc
ccagtcaccctctcctacagtccttcccctaccgctccttccctttctct
tctgagttggtaggagtccctcacatatcccccaaccctggcatgtcaag
tctctgtgatggtaggcacatcctctcccacagaggccagacatagcagc
ccatctaggaaaacatatcccacaacagcttttggaatcacctgtcacag
ttgtctaggtccacagccaaaaaaaaaaaaaaaaaaaaaaaaaactctaa
tttcattaatttagatttttctctctgccttgtagttaatttggataaga
gtttgtcaatcttattgattctgtttagaaatcaactatttgttttaatg
actctttatattgtctattttattgttgttgttgttttgattttagtgac
tttagccctgagtttgaatacttttgtcacctattcaattccggtatgat
ttactgattttttgattgattgattggttggtttgttttggggttgcttt
ttaaattatgttttgtttttagcgctttcagacatgatgttgacttacca
ttatgaggtctctacattttgttttgtttttggttgtgctgttgtgtttg
ttttgttagtgtgaagactcagtgcttgtgctgttctttagaacaagctc
ttctatgtccatagatggatatgtggatatcatttcactcatctagaaag
gtgttaattatgttatagattgttcttcattacgttggaaacgatcccaa
aatcctatatcttcccgtgctcgatatccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_62771984_62773157
seq2: B6Ng01-184B19.b_43_1206 (reverse)

seq1  GTTTGTACTGGATCTTGAGAATAA-TATA-GAAAATGGAGAAATAAAAAA  48
      |||||||||||||| || |||||| |||| ||||||||||||   |||||
seq2  GTTTGTACTGGATCCTG-GAATAATTATAGGAAAATGGAGAA--TAAAAA  47

seq1  AAATTAAAAAAATAAAAGAAAACTGGAATCCTTCCTCCAACTC--AG-AT  95
      |||||||||||   ||||||||   || ||  |||||||||||  || ||
seq2  AAATTAAAAAA--TAAAGAAAAGCTGATTC--TCCTCCAACTCCAAGAAT  93

seq1  GCTTCAGGGAAGCTAAGGTGACTAA-CCACTATTGTTTTATTTTTCTATA  144
      || |||||| |||| |||||||||| |||||||||||||  |||||||||
seq2  GC-TCAGGG-AGCT-AGGTGACTAACCCACTATTGTTTTTATTTTCTATA  140

seq1  TCATTTTAGTTTTTGGCAGGAAAAAGCATACTTTCTTACATTTCACCTCT  194
      ||||||||| |||||||||||||||||||||||   |||| |||||||||
seq2  TCATTTTAG-TTTTGGCAGGAAAAAGCATACTT--CTACA-TTCACCTCT  186

seq1  TTCTAACTTATGTTTTGAAAGAAAAACTGTTCAGGAAACAAAAAGTTATA  244
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  TTCTAACTTATG-TTTGAAAG-AAAACTGTTCAGGAAACAAAAAGTTATA  234

seq1  CATAATCATGTCTGAATAGAAAATGTTCTCATATATACACATTGTGTGAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCATGTCTGAATAGAAAATGTTCTCATATATACACATTGTGTGAG  284

seq1  TTCATGCATATGCATGTTAAACTGTCTTGTGAATACATAATAGAAAGAAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCATATGCATGTTAAACTGTCTTGTGAATACATAATAGAAAGAAG  334

seq1  ATCTCCATAATTTATTGTTCTCTCTAAACATTAAGAATGTTTTAATAACA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCATAATTTATTGTTCTCTCTAAACATTAAGAATGTTTTAATAACA  384

seq1  AATAATATTTAAGTTATCCTGCACAAACTACATATTTAAGATTTATAAAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATTTAAGTTATCCTGCACAAACTACATATTTAAGATTTATAAAT  434

seq1  TATTTCTTATAATATGATTGATGCTACTATGCTTATGTGATATATTGTGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTATAATATGATTGATGCTACTATGCTTATGTGATATATTGTGC  484

seq1  TGAATATTTCCTTTTAGTGGAGCTATTTAATAAGAAGTAGCACCGTGCAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTTCCTTTTAGTGGAGCTATTTAATAAGAAGTAGCACCGTGCAA  534

seq1  TGCCTAGTACTTATTAATAGTTAATTAATTTTATACTTTTAAACATTTTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGTACTTATTAATAGTTAATTAATTTTATACTTTTAAACATTTTT  584

seq1  ATGAGACTATAAGCAACAAGCTCAACCAGATCAATGTGATTTTTACATTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACTATAAGCAACAAGCTCAACCAGATCAATGTGATTTTTACATTT  634

seq1  TATATATTTACATACATGAACTTAGAATATACAATCCATATACACCTATA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTACATACATGAACTTAGAATATACAATCCATATACACCTATA  684

seq1  AAACATGAATCATCAATAGAAGAATAACTTGACTGGGAAAGCTTACCTTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGAATCATCAATAGAAGAATAACTTGACTGGGAAAGCTTACCTTA  734

seq1  CTATAAGAAGCGGGTATAAACTAGATTTAGTAATTCCCAAATGAAGATCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGAAGCGGGTATAAACTAGATTTAGTAATTCCCAAATGAAGATCA  784

seq1  GAGTAAGAACATGCTAAATTATGCATTTCTCAGTACAAAAAGAAGAAATT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGAACATGCTAAATTATGCATTTCTCAGTACAAAAAGAAGAAATT  834

seq1  AAAAAAAAAACTTTGAAAATATTCTCAAATAAAGCCAACCAAAAACATTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACTTTGAAAATATTCTCAAATAAAGCCAACCAAAAACATTG  884

seq1  TGTTCAGTACATATCTTGAAATCCACCTTCACTAAGACGCAACTGATTAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGTACATATCTTGAAATCCACCTTCACTAAGACGCAACTGATTAC  934

seq1  CTAAGTGCTTTGCATTTAATAGGTTTCAGACGAATCTTTGTTACTTTCTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGCTTTGCATTTAATAGGTTTCAGACGAATCTTTGTTACTTTCTA  984

seq1  AATAAATCCCTTTTATATCTTTGGCTGCATTTGGAAGGCACTGATGCGAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCCCTTTTATATCTTTGGCTGCATTTGGAAGGCACTGATGCGAT  1034

seq1  CTTGCTATTAGCAAACATGTCTAGAAATATGGTGTCAAACTCCTGAGGGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTATTAGCAAACATGTCTAGAAATATGGTGTCAAACTCCTGAGGGA  1084

seq1  AGAGGCGGGTAGACAAGGCCACTCATTAACATAAGGCATCAGCACAGAAG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCGGGTAGACAAGGCCACTCATTAACATAAGGCATCAGCACAGAAG  1134

seq1  CACCACCAAACTGACAGCAACAGAGAATTC  1174
      ||||||||||||||||||||||||||||||
seq2  CACCACCAAACTGACAGCAACAGAGAATTC  1164


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